HEADER PROTEIN BINDING 09-JUL-22 7YFV TITLE STRUCTURE OF RPGRIP1L CC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FANTOM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NEPHROCYSTIN-8,RPGR-INTERACTING PROTEIN 1-LIKE PROTEIN, COMPND 5 RPGRIP1-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RPGRIP1L, FTM, NPHP8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.HE,G.CHEN,Z.LI,J.LI REVDAT 2 29-MAY-24 7YFV 1 REMARK REVDAT 1 17-MAY-23 7YFV 0 JRNL AUTH R.HE,G.CHEN,Z.LI,J.LI JRNL TITL STRUCTURE OF THE N-TERMINAL COILED-COIL DOMAINS OF THE JRNL TITL 2 CILIARY PROTEIN RPGRIP1L. JRNL REF ISCIENCE V. 26 06249 2023 JRNL REFN ESSN 2589-0042 JRNL PMID 36915689 JRNL DOI 10.1016/J.ISCI.2023.106249 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1000 - 3.7300 1.00 2648 155 0.1936 0.2476 REMARK 3 2 3.7300 - 2.9600 1.00 2621 141 0.2206 0.2810 REMARK 3 3 2.9600 - 2.5900 1.00 2665 129 0.2330 0.2481 REMARK 3 4 2.5900 - 2.3500 0.99 2614 121 0.2363 0.2840 REMARK 3 5 2.3500 - 2.2000 0.96 2538 144 0.2522 0.2958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.992 36.229 15.430 REMARK 3 T TENSOR REMARK 3 T11: 0.4219 T22: 0.4896 REMARK 3 T33: 0.5023 T12: -0.0510 REMARK 3 T13: -0.0431 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.2046 L22: 5.7261 REMARK 3 L33: 5.0332 L12: -4.5602 REMARK 3 L13: 3.3544 L23: -6.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: -0.2196 S13: 0.2979 REMARK 3 S21: 0.0348 S22: 0.1661 S23: -0.2703 REMARK 3 S31: -0.1376 S32: -0.1580 S33: -0.1250 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 0:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.189 15.042 27.690 REMARK 3 T TENSOR REMARK 3 T11: 0.5704 T22: 0.5831 REMARK 3 T33: 0.6924 T12: -0.0920 REMARK 3 T13: -0.0707 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: 8.6181 L22: 3.0597 REMARK 3 L33: 5.6554 L12: -4.1037 REMARK 3 L13: 6.7671 L23: -3.8286 REMARK 3 S TENSOR REMARK 3 S11: -1.0889 S12: 0.7056 S13: 0.9886 REMARK 3 S21: -0.8396 S22: 0.7530 S23: 0.6528 REMARK 3 S31: -0.6469 S32: -1.2185 S33: 0.2911 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 6:48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.321 35.676 7.968 REMARK 3 T TENSOR REMARK 3 T11: 0.3390 T22: 0.3600 REMARK 3 T33: 0.4811 T12: 0.0149 REMARK 3 T13: 0.0413 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: -0.1615 L22: 8.2803 REMARK 3 L33: 5.5732 L12: -2.0921 REMARK 3 L13: 1.2921 L23: -7.0583 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.1028 S13: 0.1735 REMARK 3 S21: -0.5449 S22: 0.0631 S23: -0.4012 REMARK 3 S31: 0.2288 S32: -0.2914 S33: 0.1004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.232 30.454 30.813 REMARK 3 T TENSOR REMARK 3 T11: 0.8858 T22: 1.2718 REMARK 3 T33: 0.5973 T12: -0.0293 REMARK 3 T13: -0.1596 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 2.0867 L22: 4.1118 REMARK 3 L33: 1.3366 L12: -0.4237 REMARK 3 L13: -0.2853 L23: 2.2613 REMARK 3 S TENSOR REMARK 3 S11: 0.2679 S12: -2.2518 S13: -1.6076 REMARK 3 S21: 1.4271 S22: -0.2138 S23: 0.0837 REMARK 3 S31: 0.0637 S32: -0.0515 S33: 0.3080 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN C AND RESID 6:47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.597 16.882 5.728 REMARK 3 T TENSOR REMARK 3 T11: 0.3902 T22: 0.4370 REMARK 3 T33: 0.4319 T12: -0.0700 REMARK 3 T13: 0.0036 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 1.9955 L22: 4.8282 REMARK 3 L33: 4.1864 L12: 3.7147 REMARK 3 L13: 3.8058 L23: 5.0806 REMARK 3 S TENSOR REMARK 3 S11: -0.4595 S12: 0.0782 S13: 0.2140 REMARK 3 S21: -0.5519 S22: 0.2737 S23: 0.2248 REMARK 3 S31: -0.4066 S32: 0.5079 S33: 0.1350 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.170 40.471 19.014 REMARK 3 T TENSOR REMARK 3 T11: 0.7465 T22: 0.5901 REMARK 3 T33: 1.0945 T12: 0.0107 REMARK 3 T13: -0.0945 T23: -0.1102 REMARK 3 L TENSOR REMARK 3 L11: 3.8337 L22: 8.4163 REMARK 3 L33: 4.6626 L12: -0.1419 REMARK 3 L13: 1.8004 L23: -1.1565 REMARK 3 S TENSOR REMARK 3 S11: 0.8530 S12: 0.8109 S13: 0.2588 REMARK 3 S21: 0.4136 S22: 0.3256 S23: 0.2563 REMARK 3 S31: -0.5298 S32: -0.2028 S33: -1.0964 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN D AND RESID 6:46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.001 12.407 14.425 REMARK 3 T TENSOR REMARK 3 T11: 0.3956 T22: 0.4783 REMARK 3 T33: 0.3246 T12: 0.0050 REMARK 3 T13: -0.0210 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.3993 L22: 5.4329 REMARK 3 L33: 8.4237 L12: 1.3207 REMARK 3 L13: 1.2808 L23: 6.4273 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.1861 S13: 0.2155 REMARK 3 S21: 0.6662 S22: 0.1037 S23: 0.2633 REMARK 3 S31: 0.9650 S32: 0.3574 S33: 0.1283 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13799 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% W/V PEG6000, 0.1 M SODIUM CITRATE REMARK 280 TRIBASIC DIHYDRATE, PH 4.0, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.33700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 VAL A 1 REMARK 465 ASP A 47 REMARK 465 LYS A 48 REMARK 465 LYS A 49 REMARK 465 ARG A 50 REMARK 465 TYR A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 53 REMARK 465 VAL A 54 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 LYS B 49 REMARK 465 ARG B 50 REMARK 465 TYR B 51 REMARK 465 GLU B 52 REMARK 465 ARG B 53 REMARK 465 VAL B 54 REMARK 465 GLY B 55 REMARK 465 GLY B 56 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 LYS C 48 REMARK 465 LYS C 49 REMARK 465 ARG C 50 REMARK 465 TYR C 51 REMARK 465 GLU C 52 REMARK 465 ARG C 53 REMARK 465 VAL C 54 REMARK 465 GLY C 55 REMARK 465 GLY C 56 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 ASP D 47 REMARK 465 LYS D 48 REMARK 465 LYS D 49 REMARK 465 ARG D 50 REMARK 465 TYR D 51 REMARK 465 GLU D 52 REMARK 465 ARG D 53 REMARK 465 VAL D 54 REMARK 465 GLY D 55 REMARK 465 GLY D 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 ARG D 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 31 CG CD OE1 OE2 REMARK 470 ARG D 43 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 40 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 7 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7YFV A 1 56 UNP Q8CG73 FTM_MOUSE 42 97 DBREF 7YFV B 1 56 UNP Q8CG73 FTM_MOUSE 42 97 DBREF 7YFV C 1 56 UNP Q8CG73 FTM_MOUSE 42 97 DBREF 7YFV D 1 56 UNP Q8CG73 FTM_MOUSE 42 97 SEQADV 7YFV GLY A -3 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV PRO A -2 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV GLY A -1 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV SER A 0 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV GLY B -3 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV PRO B -2 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV GLY B -1 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV SER B 0 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV GLY C -3 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV PRO C -2 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV GLY C -1 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV SER C 0 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV GLY D -3 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV PRO D -2 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV GLY D -1 UNP Q8CG73 EXPRESSION TAG SEQADV 7YFV SER D 0 UNP Q8CG73 EXPRESSION TAG SEQRES 1 A 60 GLY PRO GLY SER VAL SER ARG VAL SER ARG GLU GLU LEU SEQRES 2 A 60 GLU ASP ARG PHE LEU ARG LEU HIS ASP GLU ASN ILE LEU SEQRES 3 A 60 LEU LYS GLN HIS ALA ARG LYS GLN GLU ASP LYS ILE LYS SEQRES 4 A 60 ARG MET ALA THR LYS LEU ILE ARG LEU VAL ASN ASP LYS SEQRES 5 A 60 LYS ARG TYR GLU ARG VAL GLY GLY SEQRES 1 B 60 GLY PRO GLY SER VAL SER ARG VAL SER ARG GLU GLU LEU SEQRES 2 B 60 GLU ASP ARG PHE LEU ARG LEU HIS ASP GLU ASN ILE LEU SEQRES 3 B 60 LEU LYS GLN HIS ALA ARG LYS GLN GLU ASP LYS ILE LYS SEQRES 4 B 60 ARG MET ALA THR LYS LEU ILE ARG LEU VAL ASN ASP LYS SEQRES 5 B 60 LYS ARG TYR GLU ARG VAL GLY GLY SEQRES 1 C 60 GLY PRO GLY SER VAL SER ARG VAL SER ARG GLU GLU LEU SEQRES 2 C 60 GLU ASP ARG PHE LEU ARG LEU HIS ASP GLU ASN ILE LEU SEQRES 3 C 60 LEU LYS GLN HIS ALA ARG LYS GLN GLU ASP LYS ILE LYS SEQRES 4 C 60 ARG MET ALA THR LYS LEU ILE ARG LEU VAL ASN ASP LYS SEQRES 5 C 60 LYS ARG TYR GLU ARG VAL GLY GLY SEQRES 1 D 60 GLY PRO GLY SER VAL SER ARG VAL SER ARG GLU GLU LEU SEQRES 2 D 60 GLU ASP ARG PHE LEU ARG LEU HIS ASP GLU ASN ILE LEU SEQRES 3 D 60 LEU LYS GLN HIS ALA ARG LYS GLN GLU ASP LYS ILE LYS SEQRES 4 D 60 ARG MET ALA THR LYS LEU ILE ARG LEU VAL ASN ASP LYS SEQRES 5 D 60 LYS ARG TYR GLU ARG VAL GLY GLY FORMUL 5 HOH *41(H2 O) HELIX 1 AA1 SER A 5 ASN A 46 1 42 HELIX 2 AA2 GLY B -1 ARG B 3 5 5 HELIX 3 AA3 SER B 5 ASN B 46 1 42 HELIX 4 AA4 SER C 5 ASP C 47 1 43 HELIX 5 AA5 SER D 0 VAL D 4 5 5 HELIX 6 AA6 SER D 5 ASN D 46 1 42 CRYST1 35.167 104.674 38.413 90.00 105.08 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028436 0.000000 0.007665 0.00000 SCALE2 0.000000 0.009553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026962 0.00000