data_7YGV # _entry.id 7YGV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YGV pdb_00007ygv 10.2210/pdb7ygv/pdb WWPDB D_1300030746 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7YGV _pdbx_database_status.recvd_initial_deposition_date 2022-07-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mun, S.A.' 1 ? 'Park, J.' 2 ? 'Kang, J.Y.' 3 ? 'Park, T.' 4 ? 'Jin, M.' 5 ? 'Ynag, J.' 6 ? 'Eom, S.H.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Iucrj _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2052-2525 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 233 _citation.page_last 245 _citation.title 'Structural and biochemical insights into Zn 2+ -bound EF-hand proteins, EFhd1 and EFhd2.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2052252523001501 _citation.pdbx_database_id_PubMed 36862489 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mun, S.A.' 1 0000-0002-2614-2221 primary 'Park, J.' 2 0000-0003-2564-5422 primary 'Kang, J.Y.' 3 ? primary 'Park, T.' 4 0000-0002-7779-9282 primary 'Jin, M.' 5 0000-0003-0076-4345 primary 'Yang, J.' 6 ? primary 'Eom, S.H.' 7 0000-0002-1272-5805 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7YGV _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.251 _cell.length_a_esd ? _cell.length_b 47.907 _cell.length_b_esd ? _cell.length_c 63.434 _cell.length_c_esd ? _cell.volume 134475.808 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7YGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EF-hand domain-containing protein D1' 14592.832 1 ? ? ? '[GAMGS + EFhd1(69-193)](GAMGS: the cleaved site after GST-TEV tag cleavage)' 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 20 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EF-hand domain-containing protein 1,Mitocalcin,Swiprosin-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMGSGTARPGRSKVFNPYTEFPEFSRRLLKDLEKMFKTYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDF DGKLSFREFLLIFHKAAAGELQEDSGLLALAKFSEIDVALEGVRGAKNFF ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMGSGTARPGRSKVFNPYTEFPEFSRRLLKDLEKMFKTYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDF DGKLSFREFLLIFHKAAAGELQEDSGLLALAKFSEIDVALEGVRGAKNFF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 SER n 1 6 GLY n 1 7 THR n 1 8 ALA n 1 9 ARG n 1 10 PRO n 1 11 GLY n 1 12 ARG n 1 13 SER n 1 14 LYS n 1 15 VAL n 1 16 PHE n 1 17 ASN n 1 18 PRO n 1 19 TYR n 1 20 THR n 1 21 GLU n 1 22 PHE n 1 23 PRO n 1 24 GLU n 1 25 PHE n 1 26 SER n 1 27 ARG n 1 28 ARG n 1 29 LEU n 1 30 LEU n 1 31 LYS n 1 32 ASP n 1 33 LEU n 1 34 GLU n 1 35 LYS n 1 36 MET n 1 37 PHE n 1 38 LYS n 1 39 THR n 1 40 TYR n 1 41 ASP n 1 42 ALA n 1 43 GLY n 1 44 ARG n 1 45 ASP n 1 46 GLY n 1 47 PHE n 1 48 ILE n 1 49 ASP n 1 50 LEU n 1 51 MET n 1 52 GLU n 1 53 LEU n 1 54 LYS n 1 55 LEU n 1 56 MET n 1 57 MET n 1 58 GLU n 1 59 LYS n 1 60 LEU n 1 61 GLY n 1 62 ALA n 1 63 PRO n 1 64 GLN n 1 65 THR n 1 66 HIS n 1 67 LEU n 1 68 GLY n 1 69 LEU n 1 70 LYS n 1 71 SER n 1 72 MET n 1 73 ILE n 1 74 LYS n 1 75 GLU n 1 76 VAL n 1 77 ASP n 1 78 GLU n 1 79 ASP n 1 80 PHE n 1 81 ASP n 1 82 GLY n 1 83 LYS n 1 84 LEU n 1 85 SER n 1 86 PHE n 1 87 ARG n 1 88 GLU n 1 89 PHE n 1 90 LEU n 1 91 LEU n 1 92 ILE n 1 93 PHE n 1 94 HIS n 1 95 LYS n 1 96 ALA n 1 97 ALA n 1 98 ALA n 1 99 GLY n 1 100 GLU n 1 101 LEU n 1 102 GLN n 1 103 GLU n 1 104 ASP n 1 105 SER n 1 106 GLY n 1 107 LEU n 1 108 LEU n 1 109 ALA n 1 110 LEU n 1 111 ALA n 1 112 LYS n 1 113 PHE n 1 114 SER n 1 115 GLU n 1 116 ILE n 1 117 ASP n 1 118 VAL n 1 119 ALA n 1 120 LEU n 1 121 GLU n 1 122 GLY n 1 123 VAL n 1 124 ARG n 1 125 GLY n 1 126 ALA n 1 127 LYS n 1 128 ASN n 1 129 PHE n 1 130 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 130 _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Efhd1, Sws2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EFHD1_MOUSE _struct_ref.pdbx_db_accession Q9D4J1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GTARPGRSKVFNPYTEFPEFSRRLLKDLEKMFKTYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLS FREFLLIFHKAAAGELQEDSGLLALAKFSEIDVALEGVRGAKNFF ; _struct_ref.pdbx_align_begin 69 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7YGV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9D4J1 _struct_ref_seq.db_align_beg 69 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 193 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 69 _struct_ref_seq.pdbx_auth_seq_align_end 193 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7YGV GLY A 1 ? UNP Q9D4J1 ? ? 'expression tag' 64 1 1 7YGV ALA A 2 ? UNP Q9D4J1 ? ? 'expression tag' 65 2 1 7YGV MET A 3 ? UNP Q9D4J1 ? ? 'expression tag' 66 3 1 7YGV GLY A 4 ? UNP Q9D4J1 ? ? 'expression tag' 67 4 1 7YGV SER A 5 ? UNP Q9D4J1 ? ? 'expression tag' 68 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YGV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.1 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl pH 8.5, 0.4 mM ZnSO4, and 25% (w/v) Jeffamine ED-2001' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-11-03 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28255 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PAL/PLS BEAMLINE 5C (4A)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.28255 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline '5C (4A)' _diffrn_source.pdbx_synchrotron_site PAL/PLS # _reflns.B_iso_Wilson_estimate 45.47 _reflns.entry_id 7YGV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3596 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.85 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 176 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.517 _reflns_shell.pdbx_Rpim_I_all 0.150 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.959 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.492 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 39.08 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7YGV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.80 _refine.ls_d_res_low 31.72 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6072 _refine.ls_number_reflns_R_free 600 _refine.ls_number_reflns_R_work 5472 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.59 _refine.ls_percent_reflns_R_free 9.88 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2004 _refine.ls_R_factor_R_free 0.2520 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1947 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7CLT _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.8171 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3108 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 31.72 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 856 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 827 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0093 ? 848 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0389 ? 1130 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0562 ? 119 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0058 ? 145 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.4408 ? 325 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.80 3.08 . . 123 1231 84.47 . . . . 0.2435 . . . . . . . . . . . 0.2323 'X-RAY DIFFRACTION' 3.08 3.53 . . 157 1439 99.50 . . . . 0.2016 . . . . . . . . . . . 0.3122 'X-RAY DIFFRACTION' 3.53 4.44 . . 158 1443 99.94 . . . . 0.1864 . . . . . . . . . . . 0.2291 'X-RAY DIFFRACTION' 4.45 31.72 . . 162 1359 94.47 . . . . 0.1832 . . . . . . . . . . . 0.2518 # _struct.entry_id 7YGV _struct.title 'Crystal structure of the Ca2+-bound EFhd1/Swiprosin-2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YGV _struct_keywords.text 'mitochondria, EF-hand containing protein, metal binding protein' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 17 ? PHE A 22 ? ASN A 80 PHE A 85 1 ? 6 HELX_P HELX_P2 AA2 SER A 26 ? ASP A 41 ? SER A 89 ASP A 104 1 ? 16 HELX_P HELX_P3 AA3 ASP A 49 ? LEU A 60 ? ASP A 112 LEU A 123 1 ? 12 HELX_P HELX_P4 AA4 THR A 65 ? ASP A 77 ? THR A 128 ASP A 140 1 ? 13 HELX_P HELX_P5 AA5 PHE A 86 ? GLY A 99 ? PHE A 149 GLY A 162 1 ? 14 HELX_P HELX_P6 AA6 SER A 105 ? SER A 114 ? SER A 168 SER A 177 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 41 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 104 A CA 201 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc2 metalc ? ? A ASP 45 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 108 A CA 201 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc3 metalc ? ? A PHE 47 O ? ? ? 1_555 B CA . CA ? ? A PHE 110 A CA 201 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc4 metalc ? ? A GLU 52 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 115 A CA 201 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc5 metalc ? ? A GLU 52 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 115 A CA 201 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc6 metalc ? ? A HIS 66 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 129 A ZN 204 1_555 ? ? ? ? ? ? ? 2.235 ? ? metalc7 metalc ? ? A LYS 70 NZ ? ? ? 1_555 E ZN . ZN ? ? A LYS 133 A ZN 204 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc8 metalc ? ? A ASP 77 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 140 A CA 202 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc9 metalc ? ? A ASP 79 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 142 A CA 202 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc10 metalc ? ? A ASP 81 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 144 A CA 202 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc11 metalc ? ? A LYS 83 O ? ? ? 1_555 C CA . CA ? ? A LYS 146 A CA 202 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc12 metalc ? ? A GLU 88 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 151 A CA 202 1_555 ? ? ? ? ? ? ? 2.500 ? ? metalc13 metalc ? ? A GLU 88 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 151 A CA 202 1_555 ? ? ? ? ? ? ? 2.668 ? ? metalc14 metalc ? ? A HIS 94 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 157 A ZN 204 3_745 ? ? ? ? ? ? ? 2.291 ? ? metalc15 metalc ? ? A GLU 100 OE1 ? ? ? 1_555 E ZN . ZN ? ? A GLU 163 A ZN 204 3_745 ? ? ? ? ? ? ? 2.278 ? ? metalc16 metalc ? ? A GLU 100 OE2 ? ? ? 1_555 E ZN . ZN ? ? A GLU 163 A ZN 204 3_745 ? ? ? ? ? ? ? 2.479 ? ? metalc17 metalc ? ? B CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 201 A HOH 309 1_555 ? ? ? ? ? ? ? 2.326 ? ? metalc18 metalc ? ? B CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 201 A HOH 312 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc19 metalc ? ? C CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 202 A HOH 302 1_555 ? ? ? ? ? ? ? 2.204 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 47 ? ILE A 48 ? PHE A 110 ILE A 111 AA1 2 LEU A 84 ? SER A 85 ? LEU A 147 SER A 148 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 48 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 111 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 84 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 147 # _atom_sites.entry_id 7YGV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022598 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020874 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015764 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? 24.64596 5.25405 ? ? 2.14387 29.76375 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 64 ? ? ? A . n A 1 2 ALA 2 65 ? ? ? A . n A 1 3 MET 3 66 ? ? ? A . n A 1 4 GLY 4 67 ? ? ? A . n A 1 5 SER 5 68 ? ? ? A . n A 1 6 GLY 6 69 ? ? ? A . n A 1 7 THR 7 70 ? ? ? A . n A 1 8 ALA 8 71 ? ? ? A . n A 1 9 ARG 9 72 ? ? ? A . n A 1 10 PRO 10 73 ? ? ? A . n A 1 11 GLY 11 74 ? ? ? A . n A 1 12 ARG 12 75 ? ? ? A . n A 1 13 SER 13 76 ? ? ? A . n A 1 14 LYS 14 77 ? ? ? A . n A 1 15 VAL 15 78 ? ? ? A . n A 1 16 PHE 16 79 79 PHE PHE A . n A 1 17 ASN 17 80 80 ASN ASN A . n A 1 18 PRO 18 81 81 PRO PRO A . n A 1 19 TYR 19 82 82 TYR TYR A . n A 1 20 THR 20 83 83 THR THR A . n A 1 21 GLU 21 84 84 GLU GLU A . n A 1 22 PHE 22 85 85 PHE PHE A . n A 1 23 PRO 23 86 86 PRO PRO A . n A 1 24 GLU 24 87 87 GLU GLU A . n A 1 25 PHE 25 88 88 PHE PHE A . n A 1 26 SER 26 89 89 SER SER A . n A 1 27 ARG 27 90 90 ARG ARG A . n A 1 28 ARG 28 91 91 ARG ARG A . n A 1 29 LEU 29 92 92 LEU LEU A . n A 1 30 LEU 30 93 93 LEU LEU A . n A 1 31 LYS 31 94 94 LYS LYS A . n A 1 32 ASP 32 95 95 ASP ASP A . n A 1 33 LEU 33 96 96 LEU LEU A . n A 1 34 GLU 34 97 97 GLU GLU A . n A 1 35 LYS 35 98 98 LYS LYS A . n A 1 36 MET 36 99 99 MET MET A . n A 1 37 PHE 37 100 100 PHE PHE A . n A 1 38 LYS 38 101 101 LYS LYS A . n A 1 39 THR 39 102 102 THR THR A . n A 1 40 TYR 40 103 103 TYR TYR A . n A 1 41 ASP 41 104 104 ASP ASP A . n A 1 42 ALA 42 105 105 ALA ALA A . n A 1 43 GLY 43 106 106 GLY GLY A . n A 1 44 ARG 44 107 107 ARG ARG A . n A 1 45 ASP 45 108 108 ASP ASP A . n A 1 46 GLY 46 109 109 GLY GLY A . n A 1 47 PHE 47 110 110 PHE PHE A . n A 1 48 ILE 48 111 111 ILE ILE A . n A 1 49 ASP 49 112 112 ASP ASP A . n A 1 50 LEU 50 113 113 LEU LEU A . n A 1 51 MET 51 114 114 MET MET A . n A 1 52 GLU 52 115 115 GLU GLU A . n A 1 53 LEU 53 116 116 LEU LEU A . n A 1 54 LYS 54 117 117 LYS LYS A . n A 1 55 LEU 55 118 118 LEU LEU A . n A 1 56 MET 56 119 119 MET MET A . n A 1 57 MET 57 120 120 MET MET A . n A 1 58 GLU 58 121 121 GLU GLU A . n A 1 59 LYS 59 122 122 LYS LYS A . n A 1 60 LEU 60 123 123 LEU LEU A . n A 1 61 GLY 61 124 124 GLY GLY A . n A 1 62 ALA 62 125 125 ALA ALA A . n A 1 63 PRO 63 126 126 PRO PRO A . n A 1 64 GLN 64 127 127 GLN GLN A . n A 1 65 THR 65 128 128 THR THR A . n A 1 66 HIS 66 129 129 HIS HIS A . n A 1 67 LEU 67 130 130 LEU LEU A . n A 1 68 GLY 68 131 131 GLY GLY A . n A 1 69 LEU 69 132 132 LEU LEU A . n A 1 70 LYS 70 133 133 LYS LYS A . n A 1 71 SER 71 134 134 SER SER A . n A 1 72 MET 72 135 135 MET MET A . n A 1 73 ILE 73 136 136 ILE ILE A . n A 1 74 LYS 74 137 137 LYS LYS A . n A 1 75 GLU 75 138 138 GLU GLU A . n A 1 76 VAL 76 139 139 VAL VAL A . n A 1 77 ASP 77 140 140 ASP ASP A . n A 1 78 GLU 78 141 141 GLU GLU A . n A 1 79 ASP 79 142 142 ASP ASP A . n A 1 80 PHE 80 143 143 PHE PHE A . n A 1 81 ASP 81 144 144 ASP ASP A . n A 1 82 GLY 82 145 145 GLY GLY A . n A 1 83 LYS 83 146 146 LYS LYS A . n A 1 84 LEU 84 147 147 LEU LEU A . n A 1 85 SER 85 148 148 SER SER A . n A 1 86 PHE 86 149 149 PHE PHE A . n A 1 87 ARG 87 150 150 ARG ARG A . n A 1 88 GLU 88 151 151 GLU GLU A . n A 1 89 PHE 89 152 152 PHE PHE A . n A 1 90 LEU 90 153 153 LEU LEU A . n A 1 91 LEU 91 154 154 LEU LEU A . n A 1 92 ILE 92 155 155 ILE ILE A . n A 1 93 PHE 93 156 156 PHE PHE A . n A 1 94 HIS 94 157 157 HIS HIS A . n A 1 95 LYS 95 158 158 LYS LYS A . n A 1 96 ALA 96 159 159 ALA ALA A . n A 1 97 ALA 97 160 160 ALA ALA A . n A 1 98 ALA 98 161 161 ALA ALA A . n A 1 99 GLY 99 162 162 GLY GLY A . n A 1 100 GLU 100 163 163 GLU GLU A . n A 1 101 LEU 101 164 164 LEU LEU A . n A 1 102 GLN 102 165 165 GLN GLN A . n A 1 103 GLU 103 166 166 GLU GLU A . n A 1 104 ASP 104 167 167 ASP ASP A . n A 1 105 SER 105 168 168 SER SER A . n A 1 106 GLY 106 169 169 GLY GLY A . n A 1 107 LEU 107 170 170 LEU LEU A . n A 1 108 LEU 108 171 171 LEU LEU A . n A 1 109 ALA 109 172 172 ALA ALA A . n A 1 110 LEU 110 173 173 LEU LEU A . n A 1 111 ALA 111 174 174 ALA ALA A . n A 1 112 LYS 112 175 175 LYS LYS A . n A 1 113 PHE 113 176 176 PHE PHE A . n A 1 114 SER 114 177 177 SER SER A . n A 1 115 GLU 115 178 178 GLU GLU A . n A 1 116 ILE 116 179 179 ILE ILE A . n A 1 117 ASP 117 180 180 ASP ASP A . n A 1 118 VAL 118 181 ? ? ? A . n A 1 119 ALA 119 182 ? ? ? A . n A 1 120 LEU 120 183 ? ? ? A . n A 1 121 GLU 121 184 ? ? ? A . n A 1 122 GLY 122 185 ? ? ? A . n A 1 123 VAL 123 186 ? ? ? A . n A 1 124 ARG 124 187 ? ? ? A . n A 1 125 GLY 125 188 ? ? ? A . n A 1 126 ALA 126 189 ? ? ? A . n A 1 127 LYS 127 190 ? ? ? A . n A 1 128 ASN 128 191 ? ? ? A . n A 1 129 PHE 129 192 ? ? ? A . n A 1 130 PHE 130 193 ? ? ? A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email eom@gist.ac.kr _pdbx_contact_author.name_first 'Soo Hyun' _pdbx_contact_author.name_last Eom _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1272-5805 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 201 1 CA CA A . C 2 CA 1 202 2 CA CA A . D 3 GOL 1 203 1 GOL GOL A . E 4 ZN 1 204 1 ZN ZN A . F 5 HOH 1 301 10 HOH HOH A . F 5 HOH 2 302 33 HOH HOH A . F 5 HOH 3 303 18 HOH HOH A . F 5 HOH 4 304 20 HOH HOH A . F 5 HOH 5 305 4 HOH HOH A . F 5 HOH 6 306 14 HOH HOH A . F 5 HOH 7 307 3 HOH HOH A . F 5 HOH 8 308 16 HOH HOH A . F 5 HOH 9 309 2 HOH HOH A . F 5 HOH 10 310 1 HOH HOH A . F 5 HOH 11 311 11 HOH HOH A . F 5 HOH 12 312 32 HOH HOH A . F 5 HOH 13 313 8 HOH HOH A . F 5 HOH 14 314 19 HOH HOH A . F 5 HOH 15 315 7 HOH HOH A . F 5 HOH 16 316 13 HOH HOH A . F 5 HOH 17 317 12 HOH HOH A . F 5 HOH 18 318 5 HOH HOH A . F 5 HOH 19 319 6 HOH HOH A . F 5 HOH 20 320 31 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 70 ? 1 MORE -19 ? 1 'SSA (A^2)' 6320 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 41 ? A ASP 104 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OD1 ? A ASP 45 ? A ASP 108 ? 1_555 78.4 ? 2 OD1 ? A ASP 41 ? A ASP 104 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? A PHE 47 ? A PHE 110 ? 1_555 69.6 ? 3 OD1 ? A ASP 45 ? A ASP 108 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? A PHE 47 ? A PHE 110 ? 1_555 77.0 ? 4 OD1 ? A ASP 41 ? A ASP 104 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 52 ? A GLU 115 ? 1_555 109.0 ? 5 OD1 ? A ASP 45 ? A ASP 108 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 52 ? A GLU 115 ? 1_555 144.3 ? 6 O ? A PHE 47 ? A PHE 110 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 52 ? A GLU 115 ? 1_555 73.6 ? 7 OD1 ? A ASP 41 ? A ASP 104 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 52 ? A GLU 115 ? 1_555 89.7 ? 8 OD1 ? A ASP 45 ? A ASP 108 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 52 ? A GLU 115 ? 1_555 162.0 ? 9 O ? A PHE 47 ? A PHE 110 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 52 ? A GLU 115 ? 1_555 111.8 ? 10 OE1 ? A GLU 52 ? A GLU 115 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 52 ? A GLU 115 ? 1_555 52.6 ? 11 OD1 ? A ASP 41 ? A ASP 104 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 139.9 ? 12 OD1 ? A ASP 45 ? A ASP 108 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 70.7 ? 13 O ? A PHE 47 ? A PHE 110 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 78.8 ? 14 OE1 ? A GLU 52 ? A GLU 115 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 84.1 ? 15 OE2 ? A GLU 52 ? A GLU 115 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 125.6 ? 16 OD1 ? A ASP 41 ? A ASP 104 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 312 ? 1_555 105.3 ? 17 OD1 ? A ASP 45 ? A ASP 108 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 312 ? 1_555 97.1 ? 18 O ? A PHE 47 ? A PHE 110 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 312 ? 1_555 172.7 ? 19 OE1 ? A GLU 52 ? A GLU 115 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 312 ? 1_555 113.4 ? 20 OE2 ? A GLU 52 ? A GLU 115 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 312 ? 1_555 72.8 ? 21 O ? F HOH . ? A HOH 309 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 312 ? 1_555 103.3 ? 22 NE2 ? A HIS 66 ? A HIS 129 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 NZ ? A LYS 70 ? A LYS 133 ? 1_555 126.6 ? 23 NE2 ? A HIS 66 ? A HIS 129 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 NE2 ? A HIS 94 ? A HIS 157 ? 1_555 80.5 ? 24 NZ ? A LYS 70 ? A LYS 133 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 NE2 ? A HIS 94 ? A HIS 157 ? 1_555 49.1 ? 25 NE2 ? A HIS 66 ? A HIS 129 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE1 ? A GLU 100 ? A GLU 163 ? 1_555 78.9 ? 26 NZ ? A LYS 70 ? A LYS 133 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE1 ? A GLU 100 ? A GLU 163 ? 1_555 48.8 ? 27 NE2 ? A HIS 94 ? A HIS 157 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE1 ? A GLU 100 ? A GLU 163 ? 1_555 6.9 ? 28 NE2 ? A HIS 66 ? A HIS 129 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE2 ? A GLU 100 ? A GLU 163 ? 1_555 81.9 ? 29 NZ ? A LYS 70 ? A LYS 133 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE2 ? A GLU 100 ? A GLU 163 ? 1_555 45.4 ? 30 NE2 ? A HIS 94 ? A HIS 157 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE2 ? A GLU 100 ? A GLU 163 ? 1_555 9.6 ? 31 OE1 ? A GLU 100 ? A GLU 163 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE2 ? A GLU 100 ? A GLU 163 ? 1_555 4.1 ? 32 OD1 ? A ASP 77 ? A ASP 140 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OD1 ? A ASP 79 ? A ASP 142 ? 1_555 82.9 ? 33 OD1 ? A ASP 77 ? A ASP 140 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OD1 ? A ASP 81 ? A ASP 144 ? 1_555 81.3 ? 34 OD1 ? A ASP 79 ? A ASP 142 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OD1 ? A ASP 81 ? A ASP 144 ? 1_555 81.0 ? 35 OD1 ? A ASP 77 ? A ASP 140 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? A LYS 83 ? A LYS 146 ? 1_555 83.7 ? 36 OD1 ? A ASP 79 ? A ASP 142 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? A LYS 83 ? A LYS 146 ? 1_555 152.3 ? 37 OD1 ? A ASP 81 ? A ASP 144 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? A LYS 83 ? A LYS 146 ? 1_555 73.0 ? 38 OD1 ? A ASP 77 ? A ASP 140 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE1 ? A GLU 88 ? A GLU 151 ? 1_555 103.4 ? 39 OD1 ? A ASP 79 ? A ASP 142 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE1 ? A GLU 88 ? A GLU 151 ? 1_555 126.6 ? 40 OD1 ? A ASP 81 ? A ASP 144 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE1 ? A GLU 88 ? A GLU 151 ? 1_555 152.2 ? 41 O ? A LYS 83 ? A LYS 146 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE1 ? A GLU 88 ? A GLU 151 ? 1_555 80.2 ? 42 OD1 ? A ASP 77 ? A ASP 140 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE2 ? A GLU 88 ? A GLU 151 ? 1_555 84.4 ? 43 OD1 ? A ASP 79 ? A ASP 142 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE2 ? A GLU 88 ? A GLU 151 ? 1_555 78.2 ? 44 OD1 ? A ASP 81 ? A ASP 144 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE2 ? A GLU 88 ? A GLU 151 ? 1_555 156.1 ? 45 O ? A LYS 83 ? A LYS 146 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE2 ? A GLU 88 ? A GLU 151 ? 1_555 124.4 ? 46 OE1 ? A GLU 88 ? A GLU 151 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE2 ? A GLU 88 ? A GLU 151 ? 1_555 50.6 ? 47 OD1 ? A ASP 77 ? A ASP 140 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 156.1 ? 48 OD1 ? A ASP 79 ? A ASP 142 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 80.4 ? 49 OD1 ? A ASP 81 ? A ASP 144 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 79.2 ? 50 O ? A LYS 83 ? A LYS 146 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 103.7 ? 51 OE1 ? A GLU 88 ? A GLU 151 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 100.3 ? 52 OE2 ? A GLU 88 ? A GLU 151 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 302 ? 1_555 108.6 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-03-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1-4487 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.8.6.1 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1-4487 4 # _pdbx_entry_details.entry_id 7YGV _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 178 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 57.70 _pdbx_validate_torsion.psi 18.55 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 64 ? A GLY 1 2 1 Y 1 A ALA 65 ? A ALA 2 3 1 Y 1 A MET 66 ? A MET 3 4 1 Y 1 A GLY 67 ? A GLY 4 5 1 Y 1 A SER 68 ? A SER 5 6 1 Y 1 A GLY 69 ? A GLY 6 7 1 Y 1 A THR 70 ? A THR 7 8 1 Y 1 A ALA 71 ? A ALA 8 9 1 Y 1 A ARG 72 ? A ARG 9 10 1 Y 1 A PRO 73 ? A PRO 10 11 1 Y 1 A GLY 74 ? A GLY 11 12 1 Y 1 A ARG 75 ? A ARG 12 13 1 Y 1 A SER 76 ? A SER 13 14 1 Y 1 A LYS 77 ? A LYS 14 15 1 Y 1 A VAL 78 ? A VAL 15 16 1 Y 1 A VAL 181 ? A VAL 118 17 1 Y 1 A ALA 182 ? A ALA 119 18 1 Y 1 A LEU 183 ? A LEU 120 19 1 Y 1 A GLU 184 ? A GLU 121 20 1 Y 1 A GLY 185 ? A GLY 122 21 1 Y 1 A VAL 186 ? A VAL 123 22 1 Y 1 A ARG 187 ? A ARG 124 23 1 Y 1 A GLY 188 ? A GLY 125 24 1 Y 1 A ALA 189 ? A ALA 126 25 1 Y 1 A LYS 190 ? A LYS 127 26 1 Y 1 A ASN 191 ? A ASN 128 27 1 Y 1 A PHE 192 ? A PHE 129 28 1 Y 1 A PHE 193 ? A PHE 130 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Research Foundation (NRF, Korea)' 'Korea, Republic Of' NRF-2021R1A2C1006267 1 'Other private' ? ? 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? 2 GOL ? ? GOL ? ? 'SUBJECT OF INVESTIGATION' ? 3 ZN ? ? ZN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 GLYCEROL GOL 4 'ZINC ION' ZN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7CLT _pdbx_initial_refinement_model.details 'EFhd1 Ca2+-bound structure with different crystal packing interaction' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #