HEADER MEMBRANE PROTEIN/INHIBITOR/IMMUNE SYSTEM18-JUL-22 7YIT TITLE MOLECULAR MECHANISM OF BIASED SIGNALING AT THE KAPPA OPIOID RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: KAPPA-TYPE OPIOID RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-OR-1,KOR-1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY39; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 13 CHAIN: E; COMPND 14 SYNONYM: CYTOCHROME B-562; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OPRK1, OPRK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562; SOURCE 16 GENE: CYBC; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KAPPA OPIOID RECEPTOR, MEMBRANE PROTEIN, NALFURAFINE, OPIOIDS, KEYWDS 2 MEMBRANE PROTEIN-INHIBITOR-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.KIM,T.CHE REVDAT 2 27-SEP-23 7YIT 1 COMPND HETNAM HETSYN REVDAT 1 12-APR-23 7YIT 0 JRNL AUTH A.EL DAIBANI,J.M.PAGGI,K.KIM,Y.D.LALOUDAKIS,P.POPOV, JRNL AUTH 2 S.M.BERNHARD,B.E.KRUMM,R.H.J.OLSEN,J.DIBERTO,F.I.CARROLL, JRNL AUTH 3 V.KATRITCH,B.WUNSCH,R.O.DROR,T.CHE JRNL TITL MOLECULAR MECHANISM OF BIASED SIGNALING AT THE KAPPA OPIOID JRNL TITL 2 RECEPTOR. JRNL REF NAT COMMUN V. 14 1338 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36906681 JRNL DOI 10.1038/S41467-023-37041-7 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 12420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.290 REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1400 - 6.8500 0.98 1385 159 0.2452 0.2764 REMARK 3 2 6.8500 - 5.4400 0.98 1303 145 0.3415 0.3832 REMARK 3 3 5.4400 - 4.7600 0.98 1297 146 0.2676 0.3072 REMARK 3 4 4.7600 - 4.3200 0.97 1270 145 0.2571 0.3471 REMARK 3 5 4.3200 - 4.0100 0.97 1275 130 0.2777 0.3411 REMARK 3 6 4.0100 - 3.7800 0.93 1219 143 0.3177 0.3939 REMARK 3 7 3.7800 - 3.5900 0.91 1171 123 0.3516 0.4368 REMARK 3 8 3.5900 - 3.4300 0.89 1153 132 0.3982 0.4491 REMARK 3 9 3.4300 - 3.3000 0.86 1103 121 0.4287 0.4849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.720 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 125.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 130.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3456 REMARK 3 ANGLE : 0.820 4754 REMARK 3 CHIRALITY : 0.045 601 REMARK 3 PLANARITY : 0.005 582 REMARK 3 DIHEDRAL : 7.609 498 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.0018 16.9771 5.5068 REMARK 3 T TENSOR REMARK 3 T11: 1.2127 T22: 1.0167 REMARK 3 T33: 1.0228 T12: -0.0213 REMARK 3 T13: 0.0479 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 0.4681 L22: 0.7973 REMARK 3 L33: 0.3541 L12: 0.0729 REMARK 3 L13: -0.0686 L23: 0.3144 REMARK 3 S TENSOR REMARK 3 S11: -0.0554 S12: -0.0086 S13: -0.0352 REMARK 3 S21: 0.0202 S22: -0.0051 S23: -0.0538 REMARK 3 S31: 0.0824 S32: -0.1890 S33: 0.0813 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 83 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40881 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6B73 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40-200 MM MAGNESIUM SULFATE HYDRATE, REMARK 280 100 MM SODIUM CITRATE TRIBASIC DEHYDRATE, 10 MM MANGANESE (II) REMARK 280 CHLORIDE TETRAHYDRATE 28-30% PEG400, PH 6.7, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.23000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 54 REMARK 465 MET A 90 REMARK 465 ASP A 204 REMARK 465 VAL A 205 REMARK 465 LEU A 258 REMARK 465 LEU A 259 REMARK 465 SER A 260 REMARK 465 GLY A 261 REMARK 465 THR A 302 REMARK 465 SER A 303 REMARK 465 HIS A 304 REMARK 465 LEU A 348 REMARK 465 LYS A 349 REMARK 465 MET A 350 REMARK 465 ARG A 351 REMARK 465 MET A 352 REMARK 465 GLU A 353 REMARK 465 ARG A 354 REMARK 465 GLN A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 SER A 358 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLN D 3 REMARK 465 ARG D 39 REMARK 465 ALA D 40 REMARK 465 PRO D 41 REMARK 465 GLY D 42 REMARK 465 GLY D 103 REMARK 465 GLN D 104 REMARK 465 SER D 105 REMARK 465 SER D 106 REMARK 465 SER D 107 REMARK 465 PRO D 108 REMARK 465 TYR D 109 REMARK 465 MET E 1000 REMARK 465 ALA E 1001 REMARK 465 ALA E 1020 REMARK 465 ASP E 1021 REMARK 465 ASN E 1022 REMARK 465 ALA E 1023 REMARK 465 ALA E 1024 REMARK 465 GLN E 1041 REMARK 465 LYS E 1042 REMARK 465 ALA E 1043 REMARK 465 THR E 1044 REMARK 465 PRO E 1045 REMARK 465 PRO E 1046 REMARK 465 LYS E 1047 REMARK 465 LEU E 1048 REMARK 465 GLU E 1049 REMARK 465 ASP E 1050 REMARK 465 LYS E 1051 REMARK 465 SER E 1052 REMARK 465 PRO E 1053 REMARK 465 ASP E 1054 REMARK 465 SER E 1055 REMARK 465 PRO E 1056 REMARK 465 GLU E 1057 REMARK 465 GLY E 1082 REMARK 465 LYS E 1083 REMARK 465 GLU E 1084 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 55 OG REMARK 470 SER A 67 OG REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 87 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LEU A 173 CG CD1 CD2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LEU A 185 CG CD1 CD2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 SER A 262 OG REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 THR A 306 OG1 CG2 REMARK 470 ASN A 336 CG OD1 ND2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 4 CG1 CG2 REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 470 VAL D 7 CG1 CG2 REMARK 470 GLU D 8 CG CD OE1 OE2 REMARK 470 LEU D 13 CG CD1 CD2 REMARK 470 ARG D 15 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 28 CG CD OE1 OE2 REMARK 470 ARG D 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 PHE D 47 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR D 60 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP D 62 CG OD1 OD2 REMARK 470 ARG D 67 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 81 CG CD1 CD2 REMARK 470 LEU D 86 CG CD1 CD2 REMARK 470 LYS D 87 CG CD CE NZ REMARK 470 HIS D 88 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 89 CG CD OE1 OE2 REMARK 470 ASP D 90 CG OD1 OD2 REMARK 470 VAL D 93 CG1 CG2 REMARK 470 TYR D 95 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 99 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 116 CG CD OE1 NE2 REMARK 470 GLN D 119 CG CD OE1 NE2 REMARK 470 ASP E1002 CG OD1 OD2 REMARK 470 LEU E1003 CG CD1 CD2 REMARK 470 ASP E1005 CG OD1 OD2 REMARK 470 ASN E1006 CG OD1 ND2 REMARK 470 GLU E1008 CG CD OE1 OE2 REMARK 470 ASP E1012 CG OD1 OD2 REMARK 470 ASN E1013 CG OD1 ND2 REMARK 470 LEU E1014 CG CD1 CD2 REMARK 470 LYS E1015 CG CD CE NZ REMARK 470 ILE E1017 CG1 CG2 CD1 REMARK 470 GLU E1018 CG CD OE1 OE2 REMARK 470 LYS E1019 CG CD CE NZ REMARK 470 GLN E1025 CG CD OE1 NE2 REMARK 470 VAL E1026 CG1 CG2 REMARK 470 LYS E1027 CG CD CE NZ REMARK 470 ASP E1028 CG OD1 OD2 REMARK 470 LYS E1032 CG CD CE NZ REMARK 470 ARG E1034 CG CD NE CZ NH1 NH2 REMARK 470 LEU E1038 CG CD1 CD2 REMARK 470 ASP E1039 OD1 OD2 REMARK 470 MET E1058 CG SD CE REMARK 470 LYS E1059 CG CD CE NZ REMARK 470 ASP E1060 CG OD1 OD2 REMARK 470 PHE E1061 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG E1062 CG CD NE CZ NH1 NH2 REMARK 470 HIS E1063 CG ND1 CD2 CE1 NE2 REMARK 470 PHE E1065 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP E1066 CG OD1 OD2 REMARK 470 LEU E1068 CG CD1 CD2 REMARK 470 ILE E1072 CG1 CG2 CD1 REMARK 470 LYS E1077 CG CD CE NZ REMARK 470 LEU E1078 CG CD1 CD2 REMARK 470 ASN E1080 CG OD1 ND2 REMARK 470 GLU E1081 CG CD OE1 OE2 REMARK 470 LYS E1085 CG CD CE NZ REMARK 470 GLU E1086 CG CD OE1 OE2 REMARK 470 GLN E1088 CG CD OE1 NE2 REMARK 470 GLU E1092 CG CD OE1 OE2 REMARK 470 GLN E1093 CG CD OE1 NE2 REMARK 470 ARG E1098 CG CD NE CZ NH1 NH2 REMARK 470 ILE E1102 CG1 CG2 CD1 REMARK 470 GLN E1103 CG CD OE1 NE2 REMARK 470 LYS E1104 CG CD CE NZ REMARK 470 TYR E1105 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU E1106 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 170 O ILE D 56 2.10 REMARK 500 OG1 THR D 52 OD1 ASP D 57 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 44.44 -79.84 REMARK 500 HIS A 162 64.36 -119.77 REMARK 500 SER A 211 -168.64 -161.36 REMARK 500 TYR A 219 29.85 48.94 REMARK 500 ALA D 49 156.38 -49.10 REMARK 500 LYS D 87 -169.44 -126.51 REMARK 500 LEU E1003 -138.81 46.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YIT A 54 358 UNP P41145 OPRK_HUMAN 54 358 DBREF 7YIT D 1 123 PDB 7YIT 7YIT 1 123 DBREF 7YIT E 1001 1106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 7YIT LEU A 135 UNP P41145 ILE 135 ENGINEERED MUTATION SEQADV 7YIT CYS A 324 UNP P41145 SER 324 ENGINEERED MUTATION SEQADV 7YIT MET E 1000 UNP P0ABE7 INITIATING METHIONINE SEQADV 7YIT TRP E 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 7YIT GLU E 1084 UNP P0ABE7 VAL 106 ENGINEERED MUTATION SEQADV 7YIT ILE E 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 7YIT LEU E 1106 UNP P0ABE7 ARG 128 VARIANT SEQADV 7YIT GLY E 1107 UNP P0ABE7 LINKER SEQADV 7YIT SER E 1108 UNP P0ABE7 LINKER SEQRES 1 A 305 ILE SER PRO ALA ILE PRO VAL ILE ILE THR ALA VAL TYR SEQRES 2 A 305 SER VAL VAL PHE VAL VAL GLY LEU VAL GLY ASN SER LEU SEQRES 3 A 305 VAL MET PHE VAL ILE ILE ARG TYR THR LYS MET LYS THR SEQRES 4 A 305 ALA THR ASN ILE TYR ILE PHE ASN LEU ALA LEU ALA ASP SEQRES 5 A 305 ALA LEU VAL THR THR THR MET PRO PHE GLN SER THR VAL SEQRES 6 A 305 TYR LEU MET ASN SER TRP PRO PHE GLY ASP VAL LEU CYS SEQRES 7 A 305 LYS ILE VAL LEU SER ILE ASP TYR TYR ASN MET PHE THR SEQRES 8 A 305 SER ILE PHE THR LEU THR MET MET SER VAL ASP ARG TYR SEQRES 9 A 305 ILE ALA VAL CYS HIS PRO VAL LYS ALA LEU ASP PHE ARG SEQRES 10 A 305 THR PRO LEU LYS ALA LYS ILE ILE ASN ILE CYS ILE TRP SEQRES 11 A 305 LEU LEU SER SER SER VAL GLY ILE SER ALA ILE VAL LEU SEQRES 12 A 305 GLY GLY THR LYS VAL ARG GLU ASP VAL ASP VAL ILE GLU SEQRES 13 A 305 CYS SER LEU GLN PHE PRO ASP ASP ASP TYR SER TRP TRP SEQRES 14 A 305 ASP LEU PHE MET LYS ILE CYS VAL PHE ILE PHE ALA PHE SEQRES 15 A 305 VAL ILE PRO VAL LEU ILE ILE ILE VAL CYS TYR THR LEU SEQRES 16 A 305 MET ILE LEU ARG LEU LYS SER VAL ARG LEU LEU SER GLY SEQRES 17 A 305 SER ARG GLU LYS ASP ARG ASN LEU ARG ARG ILE THR ARG SEQRES 18 A 305 LEU VAL LEU VAL VAL VAL ALA VAL PHE VAL VAL CYS TRP SEQRES 19 A 305 THR PRO ILE HIS ILE PHE ILE LEU VAL GLU ALA LEU GLY SEQRES 20 A 305 SER THR SER HIS SER THR ALA ALA LEU SER SER TYR TYR SEQRES 21 A 305 PHE CYS ILE ALA LEU GLY TYR THR ASN SER CYS LEU ASN SEQRES 22 A 305 PRO ILE LEU TYR ALA PHE LEU ASP GLU ASN PHE LYS ARG SEQRES 23 A 305 CYS PHE ARG ASP PHE CYS PHE PRO LEU LYS MET ARG MET SEQRES 24 A 305 GLU ARG GLN SER THR SER SEQRES 1 D 123 MET ALA GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 D 123 VAL ARG PRO GLY GLY SER LEU ARG LEU SER CYS VAL ASP SEQRES 3 D 123 SER GLU ARG THR SER TYR PRO MET GLY TRP PHE ARG ARG SEQRES 4 D 123 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SER ILE THR SEQRES 5 D 123 TRP SER GLY ILE ASP PRO THR TYR ALA ASP SER VAL ALA SEQRES 6 D 123 ASP ARG PHE THR THR SER ARG ASP VAL ALA ASN ASN THR SEQRES 7 D 123 LEU TYR LEU GLN MET ASN SER LEU LYS HIS GLU ASP THR SEQRES 8 D 123 ALA VAL TYR TYR CYS ALA ALA ARG ALA PRO VAL GLY GLN SEQRES 9 D 123 SER SER SER PRO TYR ASP TYR ASP TYR TRP GLY GLN GLY SEQRES 10 D 123 THR GLN VAL THR VAL SER SEQRES 1 E 109 MET ALA ASP LEU GLU ASP ASN TRP GLU THR LEU ASN ASP SEQRES 2 E 109 ASN LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN SEQRES 3 E 109 VAL LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU SEQRES 4 E 109 ASP ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SEQRES 5 E 109 SER PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY SEQRES 6 E 109 PHE ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS SEQRES 7 E 109 LEU ALA ASN GLU GLY LYS GLU LYS GLU ALA GLN ALA ALA SEQRES 8 E 109 ALA GLU GLN LEU LYS THR THR ARG ASN ALA TYR ILE GLN SEQRES 9 E 109 LYS TYR LEU GLY SER HET IVB A 401 35 HETNAM IVB NALFURAFINE HETSYN IVB ~{N}-[(4~{R},4~{A}~{S},7~{R},7~{A}~{R},12~{B}~{S})-3- HETSYN 2 IVB (CYCLOPROPYLMETHYL)-4~{A},9-BIS(OXIDANYL)-1,2,4,5,6,7, HETSYN 3 IVB 7~{A},13-OCTAHYDRO-4,12-METHANOBENZOFURO[3,2- HETSYN 4 IVB E]ISOQUINOLIN-7-YL]-3-(FURAN-3-YL)-~{N}-METHYL- HETSYN 5 IVB PROPANAMIDE FORMUL 4 IVB C28 H32 N2 O5 HELIX 1 AA1 PRO A 56 TYR A 87 1 32 HELIX 2 AA2 THR A 92 VAL A 108 1 17 HELIX 3 AA3 THR A 111 ASN A 122 1 12 HELIX 4 AA4 ASP A 128 HIS A 162 1 35 HELIX 5 AA5 LYS A 165 ARG A 170 1 6 HELIX 6 AA6 THR A 171 LEU A 196 1 26 HELIX 7 AA7 TRP A 221 PHE A 235 1 15 HELIX 8 AA8 PHE A 235 VAL A 256 1 22 HELIX 9 AA9 ARG A 263 GLY A 300 1 38 HELIX 10 AB1 THR A 306 ALA A 331 1 26 HELIX 11 AB2 ASP A 334 PHE A 346 1 13 HELIX 12 AB3 LYS D 87 THR D 91 5 5 HELIX 13 AB4 LEU E 1003 LYS E 1019 1 17 HELIX 14 AB5 VAL E 1026 LEU E 1038 1 13 HELIX 15 AB6 LYS E 1059 GLU E 1081 1 23 HELIX 16 AB7 ALA E 1087 LEU E 1106 1 20 SHEET 1 AA1 2 GLY A 197 VAL A 201 0 SHEET 2 AA1 2 ILE A 208 LEU A 212 -1 O SER A 211 N GLY A 198 SHEET 1 AA2 4 VAL D 7 GLU D 8 0 SHEET 2 AA2 4 SER D 19 VAL D 25 -1 O VAL D 25 N VAL D 7 SHEET 3 AA2 4 THR D 78 ASN D 84 -1 O LEU D 81 N LEU D 22 SHEET 4 AA2 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AA3 3 GLY D 35 PHE D 37 0 SHEET 2 AA3 3 ALA D 92 ALA D 97 -1 O ALA D 97 N GLY D 35 SHEET 3 AA3 3 THR D 118 VAL D 120 -1 O THR D 118 N TYR D 94 SHEET 1 AA4 2 SER D 50 ILE D 51 0 SHEET 2 AA4 2 PRO D 58 THR D 59 -1 O THR D 59 N SER D 50 SSBOND 1 CYS A 131 CYS A 210 1555 1555 2.03 SSBOND 2 CYS D 24 CYS D 96 1555 1555 2.03 CRYST1 70.750 76.530 154.460 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006474 0.00000