HEADER DNA BINDING PROTEIN 24-JUL-22 7YKV TITLE THE STRUCTURE OF ARCHAEAL NUCLEASE RECJ2 FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEAL NUCLEASE RECJ2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 GENE: MJ0831; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE RECJ2, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.WANG,X.P.LIU REVDAT 2 29-MAY-24 7YKV 1 REMARK REVDAT 1 26-JUL-23 7YKV 0 JRNL AUTH W.W.WANG,G.S.YI,H.ZHOU,Y.X.ZHAO,Q.S.WANG,J.H.HE,F.YU,X.XIAO, JRNL AUTH 2 X.P.LIU JRNL TITL THE STRUCTURE OF ARCHAEAL NUCLEASE RECJ2 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3057 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6864 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 543 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.629 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7111 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6863 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9576 ; 1.432 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15987 ; 0.480 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 879 ; 6.236 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ;19.880 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1354 ;14.475 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1074 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7868 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1332 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3472 ; 2.657 ; 3.102 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3472 ; 2.657 ; 3.102 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4341 ; 3.802 ; 4.639 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4342 ; 3.801 ; 4.640 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3639 ; 3.791 ; 3.685 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3640 ; 3.791 ; 3.685 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5227 ; 5.860 ; 5.295 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8167 ; 7.417 ;41.100 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8040 ; 7.368 ;39.676 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7YKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62817 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 175.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.10500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 400, 50MM HEPES PH 7.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.74050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 87.69750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.74050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 87.69750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 ARG A 431 REMARK 465 ARG A 432 REMARK 465 ARG B 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 819 O HOH B 822 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 618 O HOH B 725 2665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 76 -84.20 -73.43 REMARK 500 LYS A 112 42.74 -92.54 REMARK 500 ASN A 117 -126.57 -136.41 REMARK 500 ARG A 134 -22.81 -141.50 REMARK 500 LYS A 212 80.14 -151.55 REMARK 500 ASN A 261 41.10 70.23 REMARK 500 LEU A 332 -153.90 -110.48 REMARK 500 ASP A 354 -86.11 -127.43 REMARK 500 ALA A 405 119.69 -160.53 REMARK 500 ASN B 77 -62.29 133.59 REMARK 500 LYS B 78 62.27 67.90 REMARK 500 ASN B 117 -133.93 -140.55 REMARK 500 ALA B 219 45.51 -85.72 REMARK 500 GLU B 301 33.85 70.12 REMARK 500 LEU B 332 -148.95 -101.58 REMARK 500 ASP B 354 -80.76 -130.54 REMARK 500 VAL B 391 -9.68 -55.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 27 0.10 SIDE CHAIN REMARK 500 ARG A 183 0.15 SIDE CHAIN REMARK 500 ARG A 186 0.12 SIDE CHAIN REMARK 500 ARG A 421 0.10 SIDE CHAIN REMARK 500 ARG B 134 0.24 SIDE CHAIN REMARK 500 ARG B 183 0.19 SIDE CHAIN REMARK 500 ARG B 186 0.10 SIDE CHAIN REMARK 500 ARG B 266 0.10 SIDE CHAIN REMARK 500 ARG B 288 0.19 SIDE CHAIN REMARK 500 ARG B 376 0.09 SIDE CHAIN REMARK 500 ARG B 421 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 879 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B 864 DISTANCE = 6.32 ANGSTROMS DBREF 7YKV A 1 432 UNP Q58241 Y831_METJA 1 432 DBREF 7YKV B 1 432 UNP Q58241 Y831_METJA 1 432 SEQADV 7YKV ALA A -1 UNP Q58241 EXPRESSION TAG SEQADV 7YKV HIS A 0 UNP Q58241 EXPRESSION TAG SEQADV 7YKV ALA A 85 UNP Q58241 ASP 85 CONFLICT SEQADV 7YKV ALA B -1 UNP Q58241 EXPRESSION TAG SEQADV 7YKV HIS B 0 UNP Q58241 EXPRESSION TAG SEQADV 7YKV ALA B 85 UNP Q58241 ASP 85 CONFLICT SEQRES 1 A 434 ALA HIS MET MET GLU LYS LEU LYS GLU ILE GLU LYS VAL SEQRES 2 A 434 THR LYS ALA ILE LYS GLU LYS ILE LEU ASN HIS TYR GLY SEQRES 3 A 434 TYR ILE ARG VAL ILE THR HIS HIS ASP THR ASP GLY LEU SEQRES 4 A 434 SER SER GLY GLY ILE LEU ALA LYS MET LEU MET ARG THR SEQRES 5 A 434 ASN LYS LEU PHE HIS LEU THR VAL VAL GLU HIS LEU SER SEQRES 6 A 434 LYS GLU VAL ILE GLU LYS LEU ALA LYS GLU ASN GLU VAL SEQRES 7 A 434 ASN LYS PRO LEU PHE ILE PHE ALA ALA MET GLY SER GLY SEQRES 8 A 434 GLN ILE GLU GLU ILE ILE LYS HIS ASN PHE ASN ALA ILE SEQRES 9 A 434 ILE LEU ASP HIS HIS PRO PRO VAL ILE LYS ASP SER PHE SEQRES 10 A 434 ILE ASN GLU ASN ILE ILE GLN LEU ASN PRO HIS ILE PHE SEQRES 11 A 434 GLY VAL ASP GLY SER ARG GLU ILE THR ALA SER GLY VAL SEQRES 12 A 434 CYS TYR LEU VAL ALA ARG GLU PHE GLY TYR TYR ASP LEU SEQRES 13 A 434 SER VAL LEU ALA ILE VAL GLY ILE ILE GLY ASP MET GLN SEQRES 14 A 434 TYR ASN PRO LEU LEU GLY LEU ASN LYS PHE ILE VAL ASN SEQRES 15 A 434 GLU ALA ARG GLU TYR ARG TYR VAL LYS ILE MET ASN ASP SEQRES 16 A 434 ILE VAL TYR ASN ILE TYR ASP VAL GLU ILE TYR LYS ALA SEQRES 17 A 434 ILE ALA TYR CYS THR LYS PRO TYR ILE PRO ASP LEU ALA SEQRES 18 A 434 SER GLU GLY LYS ALA PHE LYS PHE LEU LYS ASP ILE GLY SEQRES 19 A 434 ILE ASP PRO ASN LYS LYS GLN LEU ASP ASP THR ASP LYS SEQRES 20 A 434 LYS LYS LEU LEU SER ALA ILE ILE PHE LYS TYR PRO LYS SEQRES 21 A 434 ILE GLU ASN LEU LEU ILE ASP ARG TYR LEU ILE GLU HIS SEQRES 22 A 434 LYS VAL ARG ASP ALA PHE LEU LEU SER GLU MET LEU ASN SEQRES 23 A 434 ALA VAL GLY ARG ASN GLY LEU PHE ALA VAL GLY ILE GLY SEQRES 24 A 434 ILE CYS LEU GLU ASP ASP GLU CYS ILE LYS ILE GLY ASN SEQRES 25 A 434 GLN ILE LEU TRP GLU TYR LYS LYS ASN LEU ILE ASN GLU SEQRES 26 A 434 LEU LYS SER VAL LYS LEU LYS LYS LEU ASN ASN ILE TYR SEQRES 27 A 434 TYR PHE GLU GLY LYS LYS GLY MET ILE GLY ILE ILE ALA SEQRES 28 A 434 SER ILE LEU VAL ASP ASP LYS PRO VAL ILE GLY TYR HIS SEQRES 29 A 434 ILE GLU GLY ASP ILE ALA LYS PHE SER ALA ARG GLY ASN SEQRES 30 A 434 ARG ASP LEU VAL ASN ARG GLY LEU ASN LEU SER VAL ALA SEQRES 31 A 434 MET ALA VAL ALA LYS GLU PHE GLY GLY ASN GLY GLY GLY SEQRES 32 A 434 HIS ASP VAL ALA SER GLY ALA VAL VAL SER LYS ASP LYS SEQRES 33 A 434 VAL GLN GLU PHE LEU LYS ARG VAL ASP GLU ILE ILE GLY SEQRES 34 A 434 GLU GLN LEU ARG ARG SEQRES 1 B 434 ALA HIS MET MET GLU LYS LEU LYS GLU ILE GLU LYS VAL SEQRES 2 B 434 THR LYS ALA ILE LYS GLU LYS ILE LEU ASN HIS TYR GLY SEQRES 3 B 434 TYR ILE ARG VAL ILE THR HIS HIS ASP THR ASP GLY LEU SEQRES 4 B 434 SER SER GLY GLY ILE LEU ALA LYS MET LEU MET ARG THR SEQRES 5 B 434 ASN LYS LEU PHE HIS LEU THR VAL VAL GLU HIS LEU SER SEQRES 6 B 434 LYS GLU VAL ILE GLU LYS LEU ALA LYS GLU ASN GLU VAL SEQRES 7 B 434 ASN LYS PRO LEU PHE ILE PHE ALA ALA MET GLY SER GLY SEQRES 8 B 434 GLN ILE GLU GLU ILE ILE LYS HIS ASN PHE ASN ALA ILE SEQRES 9 B 434 ILE LEU ASP HIS HIS PRO PRO VAL ILE LYS ASP SER PHE SEQRES 10 B 434 ILE ASN GLU ASN ILE ILE GLN LEU ASN PRO HIS ILE PHE SEQRES 11 B 434 GLY VAL ASP GLY SER ARG GLU ILE THR ALA SER GLY VAL SEQRES 12 B 434 CYS TYR LEU VAL ALA ARG GLU PHE GLY TYR TYR ASP LEU SEQRES 13 B 434 SER VAL LEU ALA ILE VAL GLY ILE ILE GLY ASP MET GLN SEQRES 14 B 434 TYR ASN PRO LEU LEU GLY LEU ASN LYS PHE ILE VAL ASN SEQRES 15 B 434 GLU ALA ARG GLU TYR ARG TYR VAL LYS ILE MET ASN ASP SEQRES 16 B 434 ILE VAL TYR ASN ILE TYR ASP VAL GLU ILE TYR LYS ALA SEQRES 17 B 434 ILE ALA TYR CYS THR LYS PRO TYR ILE PRO ASP LEU ALA SEQRES 18 B 434 SER GLU GLY LYS ALA PHE LYS PHE LEU LYS ASP ILE GLY SEQRES 19 B 434 ILE ASP PRO ASN LYS LYS GLN LEU ASP ASP THR ASP LYS SEQRES 20 B 434 LYS LYS LEU LEU SER ALA ILE ILE PHE LYS TYR PRO LYS SEQRES 21 B 434 ILE GLU ASN LEU LEU ILE ASP ARG TYR LEU ILE GLU HIS SEQRES 22 B 434 LYS VAL ARG ASP ALA PHE LEU LEU SER GLU MET LEU ASN SEQRES 23 B 434 ALA VAL GLY ARG ASN GLY LEU PHE ALA VAL GLY ILE GLY SEQRES 24 B 434 ILE CYS LEU GLU ASP ASP GLU CYS ILE LYS ILE GLY ASN SEQRES 25 B 434 GLN ILE LEU TRP GLU TYR LYS LYS ASN LEU ILE ASN GLU SEQRES 26 B 434 LEU LYS SER VAL LYS LEU LYS LYS LEU ASN ASN ILE TYR SEQRES 27 B 434 TYR PHE GLU GLY LYS LYS GLY MET ILE GLY ILE ILE ALA SEQRES 28 B 434 SER ILE LEU VAL ASP ASP LYS PRO VAL ILE GLY TYR HIS SEQRES 29 B 434 ILE GLU GLY ASP ILE ALA LYS PHE SER ALA ARG GLY ASN SEQRES 30 B 434 ARG ASP LEU VAL ASN ARG GLY LEU ASN LEU SER VAL ALA SEQRES 31 B 434 MET ALA VAL ALA LYS GLU PHE GLY GLY ASN GLY GLY GLY SEQRES 32 B 434 HIS ASP VAL ALA SER GLY ALA VAL VAL SER LYS ASP LYS SEQRES 33 B 434 VAL GLN GLU PHE LEU LYS ARG VAL ASP GLU ILE ILE GLY SEQRES 34 B 434 GLU GLN LEU ARG ARG HET IXK A 501 39 HET GOL A 502 6 HET EDO A 503 4 HET GOL A 504 6 HET GOL B 501 6 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET GOL B 505 6 HETNAM IXK [5-(6-AMINOPURIN-9-YL)-2-(HYDROXYMETHYL)FURAN-3-YL] [5- HETNAM 2 IXK (6-AMINOPURIN-9-YL)-3-OXIDANYL-FURAN-2-YL]METHYL HETNAM 3 IXK HYDROGEN PHOSPHATE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 IXK C20 H17 N10 O8 P FORMUL 4 GOL 4(C3 H8 O3) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 12 HOH *543(H2 O) HELIX 1 AA1 HIS A 0 ASN A 21 1 22 HELIX 2 AA2 ASP A 33 THR A 50 1 18 HELIX 3 AA3 SER A 63 LYS A 72 1 10 HELIX 4 AA4 LYS A 72 ASN A 77 1 6 HELIX 5 AA5 GLN A 90 ASN A 98 1 9 HELIX 6 AA6 ASN A 124 GLY A 129 5 6 HELIX 7 AA7 THR A 137 ARG A 147 1 11 HELIX 8 AA8 GLU A 148 GLY A 150 5 3 HELIX 9 AA9 TYR A 151 ASP A 153 5 3 HELIX 10 AB1 LEU A 154 ASP A 165 1 12 HELIX 11 AB2 LEU A 172 TYR A 185 1 14 HELIX 12 AB3 TYR A 196 TYR A 199 5 4 HELIX 13 AB4 GLU A 202 TYR A 209 1 8 HELIX 14 AB5 ILE A 215 ALA A 219 5 5 HELIX 15 AB6 SER A 220 ILE A 231 1 12 HELIX 16 AB7 ASP A 241 TYR A 256 1 16 HELIX 17 AB8 ASP A 275 ASN A 289 1 15 HELIX 18 AB9 LEU A 291 LEU A 300 1 10 HELIX 19 AC1 ASP A 302 VAL A 327 1 26 HELIX 20 AC2 MET A 344 VAL A 353 1 10 HELIX 21 AC3 ASN A 375 ARG A 381 1 7 HELIX 22 AC4 ASN A 384 VAL A 391 1 8 HELIX 23 AC5 ALA A 392 GLY A 396 5 5 HELIX 24 AC6 LYS A 414 LEU A 430 1 17 HELIX 25 AC7 HIS B 0 ASN B 21 1 22 HELIX 26 AC8 ASP B 33 THR B 50 1 18 HELIX 27 AC9 SER B 63 VAL B 76 1 14 HELIX 28 AD1 GLN B 90 HIS B 97 1 8 HELIX 29 AD2 ASN B 124 GLY B 129 5 6 HELIX 30 AD3 THR B 137 GLU B 148 1 12 HELIX 31 AD4 PHE B 149 GLY B 150 5 2 HELIX 32 AD5 TYR B 151 ASP B 153 5 3 HELIX 33 AD6 LEU B 154 ASP B 165 1 12 HELIX 34 AD7 LEU B 172 TYR B 185 1 14 HELIX 35 AD8 TYR B 196 TYR B 199 5 4 HELIX 36 AD9 GLU B 202 TYR B 209 1 8 HELIX 37 AE1 ILE B 215 ALA B 219 5 5 HELIX 38 AE2 SER B 220 ILE B 231 1 12 HELIX 39 AE3 ASP B 241 ILE B 253 1 13 HELIX 40 AE4 LYS B 258 ASN B 261 5 4 HELIX 41 AE5 ASP B 275 ASN B 289 1 15 HELIX 42 AE6 LEU B 291 LEU B 300 1 10 HELIX 43 AE7 ASP B 302 SER B 326 1 25 HELIX 44 AE8 MET B 344 VAL B 353 1 10 HELIX 45 AE9 ASN B 375 ARG B 381 1 7 HELIX 46 AF1 ASN B 384 VAL B 391 1 8 HELIX 47 AF2 ALA B 392 GLY B 396 5 5 HELIX 48 AF3 LYS B 414 ARG B 431 1 18 SHEET 1 AA1 5 HIS A 55 VAL A 58 0 SHEET 2 AA1 5 ILE A 26 THR A 30 1 N VAL A 28 O THR A 57 SHEET 3 AA1 5 LEU A 80 ALA A 84 1 O ILE A 82 N ARG A 27 SHEET 4 AA1 5 ASN A 100 LEU A 104 1 O LEU A 104 N PHE A 83 SHEET 5 AA1 5 ILE A 120 LEU A 123 1 O LEU A 123 N ILE A 103 SHEET 1 AA2 2 VAL A 188 ILE A 194 0 SHEET 2 AA2 2 LEU A 263 ILE A 269 -1 O LEU A 268 N LYS A 189 SHEET 1 AA3 6 LYS A 330 LYS A 331 0 SHEET 2 AA3 6 TYR A 336 GLU A 339 -1 O TYR A 337 N LYS A 330 SHEET 3 AA3 6 VAL A 358 GLU A 364 1 O ILE A 359 N TYR A 336 SHEET 4 AA3 6 ILE A 367 ARG A 373 -1 O ARG A 373 N VAL A 358 SHEET 5 AA3 6 ALA A 405 SER A 411 -1 O VAL A 410 N ALA A 368 SHEET 6 AA3 6 ASN A 398 GLY A 401 -1 N GLY A 400 O GLY A 407 SHEET 1 AA4 5 HIS B 55 VAL B 58 0 SHEET 2 AA4 5 ILE B 26 THR B 30 1 N ILE B 26 O HIS B 55 SHEET 3 AA4 5 LEU B 80 ALA B 84 1 O LEU B 80 N ARG B 27 SHEET 4 AA4 5 ASN B 100 LEU B 104 1 O ASN B 100 N PHE B 81 SHEET 5 AA4 5 ILE B 120 LEU B 123 1 O LEU B 123 N ILE B 103 SHEET 1 AA5 2 VAL B 188 ILE B 194 0 SHEET 2 AA5 2 LEU B 263 ILE B 269 -1 O ARG B 266 N MET B 191 SHEET 1 AA6 6 LYS B 330 LYS B 331 0 SHEET 2 AA6 6 TYR B 336 GLU B 339 -1 O TYR B 337 N LYS B 330 SHEET 3 AA6 6 VAL B 358 GLU B 364 1 O ILE B 359 N TYR B 336 SHEET 4 AA6 6 ILE B 367 ARG B 373 -1 O SER B 371 N GLY B 360 SHEET 5 AA6 6 ALA B 405 SER B 411 -1 O ALA B 408 N PHE B 370 SHEET 6 AA6 6 ASN B 398 GLY B 401 -1 N GLY B 400 O GLY B 407 CISPEP 1 ASN A 169 PRO A 170 0 0.83 CISPEP 2 LYS A 212 PRO A 213 0 3.75 CISPEP 3 ASN B 169 PRO B 170 0 8.47 CISPEP 4 LYS B 212 PRO B 213 0 1.19 CRYST1 83.481 175.395 66.265 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015091 0.00000