HEADER TRANSFERASE 26-JUL-22 7YLL TITLE CRYSTAL STRUCTURE OF TTEDBH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS (STRAIN DSM SOURCE 3 15242 / JCM 11007 / NBRC 100824 / MB4); SOURCE 4 ORGANISM_TAXID: 273068; SOURCE 5 STRAIN: DSM 15242 / JCM 11007 / NBRC 100824 / MB4; SOURCE 6 GENE: DINB, TTE0254; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS POLYMERASE OF DINB SUBFAMILY, TRANSLESION SYNTHESIS, DNA BINDING KEYWDS 2 PROTEIN, REPLICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YAN,L.TIAN,H.GAO REVDAT 1 06-DEC-23 7YLL 0 JRNL AUTH L.F.TIAN,H.GAO,S.YANG,Y.P.LIU,M.LI,W.XU,X.X.YAN JRNL TITL STRUCTURE AND FUNCTION OF EXTREME TLS DNA POLYMERASE TTEDBH JRNL TITL 2 FROM THERMOANAEROBACTER TENGCONGENSIS. JRNL REF INT.J.BIOL.MACROMOL. V. 253 26770 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 37683741 JRNL DOI 10.1016/J.IJBIOMAC.2023.126770 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.008 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.8769 - 4.4148 1.00 2633 145 0.2082 0.2215 REMARK 3 2 4.4148 - 3.5194 1.00 2518 127 0.2108 0.2217 REMARK 3 3 3.5194 - 3.0790 1.00 2493 122 0.2508 0.3129 REMARK 3 4 3.0790 - 2.7995 1.00 2465 122 0.2832 0.3736 REMARK 3 5 2.7995 - 2.6010 1.00 2447 146 0.2693 0.3571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.311 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.672 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2637 REMARK 3 ANGLE : 1.397 3561 REMARK 3 CHIRALITY : 0.081 415 REMARK 3 PLANARITY : 0.009 447 REMARK 3 DIHEDRAL : 24.910 1003 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 14.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 133.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2RDI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 500 MM NACL, 5 MM MG3(PO4)2, 18% [W/V] REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.59800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.59800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.10550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.59800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.59800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.10550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.59800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.59800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.10550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.59800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.59800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.10550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 204 REMARK 465 GLN A 205 REMARK 465 GLU A 206 REMARK 465 ASN A 207 REMARK 465 LEU A 208 REMARK 465 ILE A 209 REMARK 465 GLU A 210 REMARK 465 LEU A 211 REMARK 465 LYS A 340 REMARK 465 TYR A 341 REMARK 465 GLU A 342 REMARK 465 GLN A 343 REMARK 465 LEU A 344 REMARK 465 SER A 345 REMARK 465 PHE A 346 REMARK 465 LEU A 347 REMARK 465 ASP A 348 REMARK 465 LYS A 349 REMARK 465 ARG A 350 REMARK 465 LEU A 351 REMARK 465 VAL A 352 REMARK 465 LYS A 353 REMARK 465 VAL A 354 REMARK 465 ILE A 355 REMARK 465 LYS A 356 REMARK 465 ALA A 357 REMARK 465 GLY A 358 REMARK 465 ASN A 359 REMARK 465 LEU A 360 REMARK 465 ALA A 361 REMARK 465 GLU A 362 REMARK 465 GLU A 363 REMARK 465 ILE A 364 REMARK 465 ASN A 365 REMARK 465 LYS A 366 REMARK 465 ARG A 367 REMARK 465 ILE A 368 REMARK 465 GLY A 369 REMARK 465 LYS A 370 REMARK 465 LYS A 371 REMARK 465 ILE A 372 REMARK 465 ILE A 373 REMARK 465 LYS A 374 REMARK 465 LYS A 375 REMARK 465 GLY A 376 REMARK 465 SER A 377 REMARK 465 GLU A 378 REMARK 465 LEU A 379 REMARK 465 LEU A 380 REMARK 465 LYS A 381 REMARK 465 ASP A 382 REMARK 465 ASN A 383 REMARK 465 LYS A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 88 CZ NH1 NH2 REMARK 470 LYS A 125 CD CE NZ REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 TYR A 220 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 224 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 LYS A 248 CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 314 CE NZ REMARK 470 LYS A 321 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 136 O LYS A 154 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 166 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 VAL A 166 N - CA - C ANGL. DEV. = -31.5 DEGREES REMARK 500 PRO A 167 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO A 167 C - N - CD ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 57.35 33.40 REMARK 500 ALA A 56 -1.01 72.78 REMARK 500 SER A 140 -160.83 -164.18 REMARK 500 ASN A 153 59.50 -98.50 REMARK 500 PRO A 167 -1.94 -53.23 REMARK 500 HIS A 179 -58.90 74.29 REMARK 500 LYS A 188 1.50 -60.86 REMARK 500 GLU A 195 -35.60 -133.52 REMARK 500 LEU A 201 108.07 -54.46 REMARK 500 LYS A 214 13.16 52.66 REMARK 500 ARG A 224 -167.86 -79.83 REMARK 500 ASP A 227 -64.86 -135.90 REMARK 500 GLU A 228 -11.25 71.48 REMARK 500 ARG A 304 -15.12 -144.83 REMARK 500 LYS A 321 66.66 66.80 REMARK 500 ASN A 335 62.50 61.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 166 PRO A 167 -131.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 652 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 654 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 655 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 656 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 658 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A 659 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 8.71 ANGSTROMS REMARK 525 HOH A 662 DISTANCE = 9.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 MET A 10 O 79.8 REMARK 620 3 ASP A 103 OD2 97.1 93.8 REMARK 620 4 PO4 A 401 O4 88.7 94.4 170.7 REMARK 620 5 HOH A 516 O 174.9 100.9 88.0 86.2 REMARK 620 6 HOH A 570 O 99.8 179.4 86.7 85.2 79.5 REMARK 620 N 1 2 3 4 5 DBREF 7YLL A 1 384 UNP P58965 DPO4_CALS4 1 384 SEQRES 1 A 384 MET LYS ARG LYS ILE ILE HIS VAL ASP MET ASP ALA PHE SEQRES 2 A 384 PHE ALA SER ILE GLU GLN GLN ASP ASN PRO GLU TYR ARG SEQRES 3 A 384 GLY LYS PRO VAL ILE VAL GLY GLY LEU SER GLY ARG GLY SEQRES 4 A 384 VAL VAL SER THR CYS SER TYR GLU ALA ARG LYS TYR GLY SEQRES 5 A 384 ILE HIS SER ALA MET PRO MET TYR MET ALA LYS LYS LEU SEQRES 6 A 384 CYS PRO GLN GLY ILE PHE LEU PRO VAL ARG ARG LYS ARG SEQRES 7 A 384 TYR GLU GLU VAL SER GLU GLN ILE PHE ARG ILE LEU TYR SEQRES 8 A 384 ASP ILE THR PRO PHE VAL GLU PRO VAL SER ILE ASP GLU SEQRES 9 A 384 ALA TYR LEU ASP VAL THR HIS VAL ASP LYS ASN PRO GLU SEQRES 10 A 384 ASP ILE ALA LEU GLU ILE LYS LYS ARG VAL LYS ASP ALA SEQRES 11 A 384 THR GLY LEU THR VAL SER VAL GLY ILE SER TYR ASN LYS SEQRES 12 A 384 PHE LEU ALA LYS LEU ALA SER ASP TRP ASN LYS PRO ASP SEQRES 13 A 384 GLY LEU MET VAL ILE THR GLU ASP MET VAL PRO GLU ILE SEQRES 14 A 384 LEU LYS PRO LEU PRO VAL THR LYS VAL HIS GLY ILE GLY SEQRES 15 A 384 GLU LYS SER ALA GLU LYS LEU ARG SER ILE GLY ILE GLU SEQRES 16 A 384 THR VAL GLU ASP LEU LEU LYS LEU PRO GLN GLU ASN LEU SEQRES 17 A 384 ILE GLU LEU PHE GLY LYS THR GLY VAL GLU ILE TYR ASN SEQRES 18 A 384 ARG ILE ARG GLY ILE ASP GLU ARG PRO VAL GLU THR MET SEQRES 19 A 384 ARG GLU ILE LYS SER ILE GLY LYS GLU LYS THR LEU GLU SEQRES 20 A 384 LYS ASP THR LYS ASN LYS GLU LEU LEU ILE GLN HIS LEU SEQRES 21 A 384 LYS GLU PHE SER GLU ILE VAL SER GLU GLU LEU ILE LYS SEQRES 22 A 384 GLU ARG LEU TYR CYS ARG THR VAL THR VAL LYS ILE LYS SEQRES 23 A 384 THR ALA ASP PHE ALA VAL HIS THR LYS SER LYS THR VAL SEQRES 24 A 384 ASP LYS TYR ILE ARG PHE SER GLU ASP ILE TYR GLU VAL SEQRES 25 A 384 ALA LYS GLY ILE LEU GLU GLU TRP LYS LEU GLU GLN TYR SEQRES 26 A 384 VAL ARG LEU ILE GLY LEU SER VAL SER ASN LEU SER PRO SEQRES 27 A 384 VAL LYS TYR GLU GLN LEU SER PHE LEU ASP LYS ARG LEU SEQRES 28 A 384 VAL LYS VAL ILE LYS ALA GLY ASN LEU ALA GLU GLU ILE SEQRES 29 A 384 ASN LYS ARG ILE GLY LYS LYS ILE ILE LYS LYS GLY SER SEQRES 30 A 384 GLU LEU LEU LYS ASP ASN LYS HET PO4 A 401 5 HET MG A 402 1 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 2 PO4 O4 P 3- FORMUL 3 MG MG 2+ FORMUL 4 HOH *162(H2 O) HELIX 1 AA1 ALA A 12 ASN A 22 1 11 HELIX 2 AA2 PRO A 23 ARG A 26 5 4 HELIX 3 AA3 SER A 45 TYR A 51 1 7 HELIX 4 AA4 PRO A 58 CYS A 66 1 9 HELIX 5 AA5 ARG A 75 THR A 94 1 20 HELIX 6 AA6 ASN A 115 GLY A 132 1 18 HELIX 7 AA7 ASN A 142 ASN A 153 1 12 HELIX 8 AA8 VAL A 166 LYS A 171 5 6 HELIX 9 AA9 PRO A 174 HIS A 179 5 6 HELIX 10 AB1 ALA A 186 SER A 191 1 6 HELIX 11 AB2 THR A 196 LEU A 201 1 6 HELIX 12 AB3 THR A 215 ARG A 224 1 10 HELIX 13 AB4 ASN A 252 ARG A 275 1 24 HELIX 14 AB5 PHE A 305 GLU A 319 1 15 SHEET 1 AA1 5 VAL A 97 SER A 101 0 SHEET 2 AA1 5 GLU A 104 ASP A 108 -1 O GLU A 104 N VAL A 100 SHEET 3 AA1 5 ILE A 5 MET A 10 -1 N ILE A 6 O LEU A 107 SHEET 4 AA1 5 VAL A 135 SER A 140 -1 O SER A 136 N ASP A 9 SHEET 5 AA1 5 LEU A 158 VAL A 160 1 O MET A 159 N ILE A 139 SHEET 1 AA2 3 VAL A 41 CYS A 44 0 SHEET 2 AA2 3 VAL A 30 GLY A 33 -1 N VAL A 32 O THR A 43 SHEET 3 AA2 3 ILE A 70 LEU A 72 1 O ILE A 70 N ILE A 31 SHEET 1 AA3 4 SER A 239 THR A 250 0 SHEET 2 AA3 4 VAL A 326 LEU A 336 -1 O ARG A 327 N LEU A 246 SHEET 3 AA3 4 CYS A 278 THR A 287 -1 N THR A 282 O SER A 332 SHEET 4 AA3 4 VAL A 292 ILE A 303 -1 O HIS A 293 N ILE A 285 LINK OD1 ASP A 9 MG MG A 402 1555 1555 2.35 LINK O MET A 10 MG MG A 402 1555 1555 2.23 LINK OD2 ASP A 103 MG MG A 402 1555 1555 2.06 LINK O4 PO4 A 401 MG MG A 402 1555 1555 2.20 LINK MG MG A 402 O HOH A 516 1555 1555 2.70 LINK MG MG A 402 O HOH A 570 1555 1555 2.63 CRYST1 105.196 105.196 74.211 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009506 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013475 0.00000