HEADER OXIDOREDUCTASE 26-JUL-22 7YLO TITLE CONVERSION OF INDOLE-3-ACETIC ACID INTO INDOLE-3-ALDEHYDE IN BACTERIA TITLE 2 METABOLIC NETWORK OF TRYPTOPHAN AROUND THE INDOLE-3-ALDEHYDE TITLE 3 FORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYP-TYPE PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IRON-DEPENDENT PEROXIDASE,PEROXIDASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMOSILACTOBACILLUS FERMENTUM; SOURCE 3 ORGANISM_TAXID: 1613; SOURCE 4 GENE: BUW47_03110, C1Y38_03730, DBX48_02645, GC247_08580, SOURCE 5 GDZ34_00450, GJA14_02385, LACFE_CDS1279; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEROXIDASE, LYP, BIOSYNTHETIC PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CHENG,Y.LUO,J.ZHU,R.TAN,N.WANG,A.A.LEBEDEV REVDAT 1 05-JUL-23 7YLO 0 JRNL AUTH Y.LUO JRNL TITL CONVERSION OF INDOLE-3-ACETIC ACID INTO INDOLE-3-ALDEHYDE IN JRNL TITL 2 BACTERIA METABOLIC NETWORK OF TRYPTOPHAN AROUND THE JRNL TITL 3 INDOLE-3-ALDEHYDE FORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0350 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 46.2 REMARK 3 NUMBER OF REFLECTIONS : 36030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.996 REMARK 3 FREE R VALUE TEST SET COUNT : 1800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 29.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45800 REMARK 3 B22 (A**2) : 0.45800 REMARK 3 B33 (A**2) : -1.48600 REMARK 3 B12 (A**2) : 0.22900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.310 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5202 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4462 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7094 ; 1.503 ; 1.679 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10396 ; 0.569 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 7.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;11.513 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 782 ;12.356 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6066 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1080 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 990 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 47 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2518 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2486 ; 1.864 ; 2.262 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2486 ; 1.863 ; 2.262 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3104 ; 2.681 ; 3.383 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3105 ; 2.681 ; 3.383 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2716 ; 2.372 ; 2.550 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2714 ; 2.367 ; 2.549 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3990 ; 3.653 ; 3.735 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3990 ; 3.648 ; 3.735 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 313 NULL REMARK 3 1 A 3 A 313 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THEIR RIDING POSITIONS. REMARK 3 REMARK 3 REMARK 3 THE MODEL REPRESENTS AN ORDERED DOMAIN OF A PARTIALLY DISORDERED REMARK 3 CRYSTAL. REFLECTIONS L=2N+1 WERE SEVERELY AFFECTED BY CRYSTAL REMARK 3 DISORDER AND COULD NOT BE MEASURED. REFLECTIONS L=2N WERE NOT REMARK 3 AFFECTED BY CRYSTAL DISORDER AND WERE USED FOR STRUCTURE SOLUTION REMARK 3 AND REFINEMENT. SCALING AND MERGING WAS DONE IN POINT GROUP 6 2 2, REMARK 3 C=42.0A. REFINEMENT WAS CONDUCTED AGAINST 50% COMPLETE P 3 2 1 REMARK 3 DATA SET, C=84A, SEE ASSOCIATED MANUSCRIPT FOR DETAILS. REMARK 4 REMARK 4 7YLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300029231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 67.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 2.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LITHIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE (PH 5.6) AND 0.5 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 ASP A 269 CG OD1 OD2 REMARK 470 LYS A 307 CE NZ REMARK 470 ARG B 13 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 78 CG CD OE1 NE2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 ASP B 237 CG OD1 OD2 REMARK 470 ASP B 269 CG OD1 OD2 REMARK 470 LYS B 307 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -90.76 -139.39 REMARK 500 ASP A 94 -80.95 -86.98 REMARK 500 ASP A 161 -121.12 48.47 REMARK 500 HIS A 171 -146.07 -104.31 REMARK 500 ARG B 13 -91.38 -139.36 REMARK 500 ASP B 94 -81.07 -87.34 REMARK 500 ASP B 161 -121.44 48.35 REMARK 500 HIS B 171 -146.08 -104.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 7 0.10 SIDE CHAIN REMARK 500 ARG A 129 0.08 SIDE CHAIN REMARK 500 ARG A 209 0.10 SIDE CHAIN REMARK 500 ARG B 7 0.10 SIDE CHAIN REMARK 500 ARG B 50 0.08 SIDE CHAIN REMARK 500 ARG B 129 0.08 SIDE CHAIN REMARK 500 ARG B 209 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 NE2 REMARK 620 2 HEM A 401 NA 87.3 REMARK 620 3 HEM A 401 NB 85.3 88.1 REMARK 620 4 HEM A 401 NC 95.7 172.8 85.6 REMARK 620 5 HEM A 401 ND 97.1 93.0 177.4 93.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 227 NE2 REMARK 620 2 HEM B 401 NA 87.8 REMARK 620 3 HEM B 401 NB 85.4 88.1 REMARK 620 4 HEM B 401 NC 95.6 172.6 85.5 REMARK 620 5 HEM B 401 ND 97.2 93.0 177.2 93.1 REMARK 620 N 1 2 3 4 DBREF1 7YLO A 1 313 UNP A0A0G9GI91_LIMFE DBREF2 7YLO A A0A0G9GI91 1 313 DBREF1 7YLO B 1 313 UNP A0A0G9GI91_LIMFE DBREF2 7YLO B A0A0G9GI91 1 313 SEQRES 1 A 313 MSE SER VAL ASN PRO GLN ARG SER GLN ASP VAL TYR ARG SEQRES 2 A 313 ASP ALA GLY LYS ASN VAL LEU PHE LEU MSE LEU SER LEU SEQRES 3 A 313 ASN ARG GLN ASP GLN THR ASN GLU LYS ALA ALA VAL GLU SEQRES 4 A 313 GLU THR ALA ASP ARG LEU GLN ALA ILE LYS ARG SER LEU SEQRES 5 A 313 ASN VAL ARG TYR PRO ASP SER HIS LEU ARG ILE ALA CYS SEQRES 6 A 313 GLY ILE SER SER LYS ALA TRP ASP TYR LEU PHE PRO GLN SEQRES 7 A 313 ALA PRO LYS PRO LYS GLU LEU GLU ASP PHE THR GLY ILE SEQRES 8 A 313 LYS GLY ASP LYS TYR ASP ALA PRO GLY THR PRO ALA ASP SEQRES 9 A 313 LEU PHE PHE HIS VAL ARG ALA ASP ASP GLN SER LEU THR SEQRES 10 A 313 TYR GLU VAL ILE ASP GLU ILE MSE THR PHE LEU ARG PRO SEQRES 11 A 313 VAL THR LYS VAL VAL ASP GLU THR HIS GLY PHE ARG TYR SEQRES 12 A 313 PHE GLU GLY ARG ALA ILE ILE GLY PHE VAL ASP GLY THR SEQRES 13 A 313 GLU ASN PRO VAL ASP ALA ASP ALA VAL GLU TRP GLY ILE SEQRES 14 A 313 ILE HIS GLU GLU ASP PRO GLU PHE GLU ASN GLY SER TYR SEQRES 15 A 313 ALA PHE ALA GLN LYS TYR LEU HIS GLN MSE ASP ALA TRP SEQRES 16 A 313 LYS SER LEU SER THR GLU GLN GLN GLU GLN VAL ILE GLY SEQRES 17 A 313 ARG ARG LYS PHE THR ASP LEU GLU GLN GLY ASP GLU ASP SEQRES 18 A 313 LYS ASN GLN ARG ALA HIS ASN VAL VAL SER GLN ASP ASN SEQRES 19 A 313 ARG ASN ASP VAL GLU HIS LYS ILE ILE ARG MSE ASN VAL SEQRES 20 A 313 PRO PHE SER ASP PRO GLY GLU ASN VAL THR GLY THR TYR SEQRES 21 A 313 PHE ILE GLY TYR GLY ARG TYR TRP ASP VAL THR LYS THR SEQRES 22 A 313 MSE LEU THR ASN MSE PHE THR LYS ASN ASP LEU LEU LEU SEQRES 23 A 313 ASP TYR SER THR PRO VAL ASN GLY GLN VAL PHE PHE ILE SEQRES 24 A 313 PRO SER ILE ASP THR LEU ASP LYS ILE ALA ASP ASP GLU SEQRES 25 A 313 TYR SEQRES 1 B 313 MSE SER VAL ASN PRO GLN ARG SER GLN ASP VAL TYR ARG SEQRES 2 B 313 ASP ALA GLY LYS ASN VAL LEU PHE LEU MSE LEU SER LEU SEQRES 3 B 313 ASN ARG GLN ASP GLN THR ASN GLU LYS ALA ALA VAL GLU SEQRES 4 B 313 GLU THR ALA ASP ARG LEU GLN ALA ILE LYS ARG SER LEU SEQRES 5 B 313 ASN VAL ARG TYR PRO ASP SER HIS LEU ARG ILE ALA CYS SEQRES 6 B 313 GLY ILE SER SER LYS ALA TRP ASP TYR LEU PHE PRO GLN SEQRES 7 B 313 ALA PRO LYS PRO LYS GLU LEU GLU ASP PHE THR GLY ILE SEQRES 8 B 313 LYS GLY ASP LYS TYR ASP ALA PRO GLY THR PRO ALA ASP SEQRES 9 B 313 LEU PHE PHE HIS VAL ARG ALA ASP ASP GLN SER LEU THR SEQRES 10 B 313 TYR GLU VAL ILE ASP GLU ILE MSE THR PHE LEU ARG PRO SEQRES 11 B 313 VAL THR LYS VAL VAL ASP GLU THR HIS GLY PHE ARG TYR SEQRES 12 B 313 PHE GLU GLY ARG ALA ILE ILE GLY PHE VAL ASP GLY THR SEQRES 13 B 313 GLU ASN PRO VAL ASP ALA ASP ALA VAL GLU TRP GLY ILE SEQRES 14 B 313 ILE HIS GLU GLU ASP PRO GLU PHE GLU ASN GLY SER TYR SEQRES 15 B 313 ALA PHE ALA GLN LYS TYR LEU HIS GLN MSE ASP ALA TRP SEQRES 16 B 313 LYS SER LEU SER THR GLU GLN GLN GLU GLN VAL ILE GLY SEQRES 17 B 313 ARG ARG LYS PHE THR ASP LEU GLU GLN GLY ASP GLU ASP SEQRES 18 B 313 LYS ASN GLN ARG ALA HIS ASN VAL VAL SER GLN ASP ASN SEQRES 19 B 313 ARG ASN ASP VAL GLU HIS LYS ILE ILE ARG MSE ASN VAL SEQRES 20 B 313 PRO PHE SER ASP PRO GLY GLU ASN VAL THR GLY THR TYR SEQRES 21 B 313 PHE ILE GLY TYR GLY ARG TYR TRP ASP VAL THR LYS THR SEQRES 22 B 313 MSE LEU THR ASN MSE PHE THR LYS ASN ASP LEU LEU LEU SEQRES 23 B 313 ASP TYR SER THR PRO VAL ASN GLY GLN VAL PHE PHE ILE SEQRES 24 B 313 PRO SER ILE ASP THR LEU ASP LYS ILE ALA ASP ASP GLU SEQRES 25 B 313 TYR MODRES 7YLO MSE A 23 MET MODIFIED RESIDUE MODRES 7YLO MSE A 125 MET MODIFIED RESIDUE MODRES 7YLO MSE A 192 MET MODIFIED RESIDUE MODRES 7YLO MSE A 245 MET MODIFIED RESIDUE MODRES 7YLO MSE A 274 MET MODIFIED RESIDUE MODRES 7YLO MSE A 278 MET MODIFIED RESIDUE MODRES 7YLO MSE B 23 MET MODIFIED RESIDUE MODRES 7YLO MSE B 125 MET MODIFIED RESIDUE MODRES 7YLO MSE B 192 MET MODIFIED RESIDUE MODRES 7YLO MSE B 245 MET MODIFIED RESIDUE MODRES 7YLO MSE B 274 MET MODIFIED RESIDUE MODRES 7YLO MSE B 278 MET MODIFIED RESIDUE HET MSE A 23 8 HET MSE A 125 8 HET MSE A 192 8 HET MSE A 245 8 HET MSE A 274 8 HET MSE A 278 8 HET MSE B 23 8 HET MSE B 125 8 HET MSE B 192 8 HET MSE B 245 8 HET MSE B 274 8 HET MSE B 278 8 HET HEM A 401 43 HET HEM B 401 43 HETNAM MSE SELENOMETHIONINE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *232(H2 O) HELIX 1 AA1 ASN A 4 SER A 8 5 5 HELIX 2 AA2 ASP A 30 TYR A 56 1 27 HELIX 3 AA3 SER A 68 PHE A 76 1 9 HELIX 4 AA4 ASP A 113 ARG A 129 1 17 HELIX 5 AA5 TYR A 143 ARG A 147 5 5 HELIX 6 AA6 ASP A 161 ILE A 169 1 9 HELIX 7 AA7 ASP A 174 GLU A 178 5 5 HELIX 8 AA8 GLN A 191 LEU A 198 1 8 HELIX 9 AA9 SER A 199 GLY A 208 1 10 HELIX 10 AB1 GLY A 218 LYS A 222 5 5 HELIX 11 AB2 ALA A 226 SER A 231 1 6 HELIX 12 AB3 ASN A 234 VAL A 238 5 5 HELIX 13 AB4 TYR A 267 LYS A 281 1 15 HELIX 14 AB5 ASP A 283 ASP A 287 5 5 HELIX 15 AB6 SER A 301 ASP A 310 1 10 HELIX 16 AB7 ASN B 4 SER B 8 5 5 HELIX 17 AB8 ASP B 30 TYR B 56 1 27 HELIX 18 AB9 SER B 68 PHE B 76 1 9 HELIX 19 AC1 ASP B 113 ARG B 129 1 17 HELIX 20 AC2 TYR B 143 ARG B 147 5 5 HELIX 21 AC3 ASP B 161 ILE B 169 1 9 HELIX 22 AC4 ASP B 174 GLU B 178 5 5 HELIX 23 AC5 GLN B 191 LEU B 198 1 8 HELIX 24 AC6 SER B 199 GLY B 208 1 10 HELIX 25 AC7 GLY B 218 LYS B 222 5 5 HELIX 26 AC8 ALA B 226 SER B 231 1 6 HELIX 27 AC9 ASN B 234 VAL B 238 5 5 HELIX 28 AD1 TYR B 267 LYS B 281 1 15 HELIX 29 AD2 ASP B 283 ASP B 287 5 5 HELIX 30 AD3 SER B 301 ASP B 310 1 10 SHEET 1 AA1 4 ARG A 62 ILE A 67 0 SHEET 2 AA1 4 LEU A 105 ALA A 111 -1 O ARG A 110 N ARG A 62 SHEET 3 AA1 4 ASN A 18 LEU A 26 -1 N LEU A 20 O VAL A 109 SHEET 4 AA1 4 THR A 132 PHE A 141 -1 O ASP A 136 N MSE A 23 SHEET 1 AA2 2 GLY A 90 ILE A 91 0 SHEET 2 AA2 2 ALA A 98 PRO A 99 -1 O ALA A 98 N ILE A 91 SHEET 1 AA3 4 ILE A 243 ARG A 244 0 SHEET 2 AA3 4 VAL A 256 GLY A 265 -1 O TYR A 264 N ILE A 243 SHEET 3 AA3 4 SER A 181 HIS A 190 -1 N GLN A 186 O PHE A 261 SHEET 4 AA3 4 SER A 289 PRO A 291 -1 O THR A 290 N LEU A 189 SHEET 1 AA4 4 VAL A 247 ASP A 251 0 SHEET 2 AA4 4 VAL A 256 GLY A 265 -1 O TYR A 260 N VAL A 247 SHEET 3 AA4 4 SER A 181 HIS A 190 -1 N GLN A 186 O PHE A 261 SHEET 4 AA4 4 GLN A 295 ILE A 299 -1 O ILE A 299 N SER A 181 SHEET 1 AA5 4 ARG B 62 ILE B 67 0 SHEET 2 AA5 4 LEU B 105 ALA B 111 -1 O ARG B 110 N ARG B 62 SHEET 3 AA5 4 ASN B 18 LEU B 26 -1 N LEU B 20 O VAL B 109 SHEET 4 AA5 4 THR B 132 PHE B 141 -1 O ASP B 136 N MSE B 23 SHEET 1 AA6 2 GLY B 90 ILE B 91 0 SHEET 2 AA6 2 ALA B 98 PRO B 99 -1 O ALA B 98 N ILE B 91 SHEET 1 AA7 4 ILE B 243 ARG B 244 0 SHEET 2 AA7 4 VAL B 256 GLY B 265 -1 O TYR B 264 N ILE B 243 SHEET 3 AA7 4 SER B 181 HIS B 190 -1 N GLN B 186 O PHE B 261 SHEET 4 AA7 4 SER B 289 PRO B 291 -1 O THR B 290 N LEU B 189 SHEET 1 AA8 4 VAL B 247 ASP B 251 0 SHEET 2 AA8 4 VAL B 256 GLY B 265 -1 O TYR B 260 N VAL B 247 SHEET 3 AA8 4 SER B 181 HIS B 190 -1 N GLN B 186 O PHE B 261 SHEET 4 AA8 4 GLN B 295 ILE B 299 -1 O ILE B 299 N SER B 181 LINK C LEU A 22 N MSE A 23 1555 1555 1.34 LINK C MSE A 23 N LEU A 24 1555 1555 1.34 LINK C ILE A 124 N MSE A 125 1555 1555 1.35 LINK C MSE A 125 N THR A 126 1555 1555 1.35 LINK C GLN A 191 N MSE A 192 1555 1555 1.34 LINK C MSE A 192 N ASP A 193 1555 1555 1.34 LINK C ARG A 244 N MSE A 245 1555 1555 1.34 LINK C MSE A 245 N ASN A 246 1555 1555 1.35 LINK C THR A 273 N MSE A 274 1555 1555 1.34 LINK C MSE A 274 N LEU A 275 1555 1555 1.33 LINK C ASN A 277 N MSE A 278 1555 1555 1.32 LINK C MSE A 278 N PHE A 279 1555 1555 1.35 LINK C LEU B 22 N MSE B 23 1555 1555 1.34 LINK C MSE B 23 N LEU B 24 1555 1555 1.34 LINK C ILE B 124 N MSE B 125 1555 1555 1.35 LINK C MSE B 125 N THR B 126 1555 1555 1.34 LINK C GLN B 191 N MSE B 192 1555 1555 1.34 LINK C MSE B 192 N ASP B 193 1555 1555 1.34 LINK C ARG B 244 N MSE B 245 1555 1555 1.34 LINK C MSE B 245 N ASN B 246 1555 1555 1.35 LINK C THR B 273 N MSE B 274 1555 1555 1.35 LINK C MSE B 274 N LEU B 275 1555 1555 1.33 LINK C ASN B 277 N MSE B 278 1555 1555 1.32 LINK C MSE B 278 N PHE B 279 1555 1555 1.35 LINK NE2 HIS A 227 FE HEM A 401 1555 1555 2.02 LINK NE2 HIS B 227 FE HEM B 401 1555 1555 2.02 CRYST1 135.179 135.179 83.979 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007398 0.004271 0.000000 0.00000 SCALE2 0.000000 0.008542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011908 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -1.000000 -0.000020 -0.000019 135.17957 1 MTRIX2 2 -0.000020 1.000000 -0.000063 0.00376 1 MTRIX3 2 0.000019 -0.000063 -1.000000 62.98473 1