HEADER CYTOSOLIC PROTEIN 01-AUG-22 7YNX TITLE CRYSTAL STRUCTURE OF PIRH2 BOUND TO POLY-ALA PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN COMPND 3 1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ANDROGEN RECEPTOR N-TERMINAL-INTERACTING PROTEIN,CH-RICH- COMPND 6 INTERACTING MATCH WITH PLAG1,E3 UBIQUITIN-PROTEIN LIGASE PIRH2,RING COMPND 7 FINGER PROTEIN 199,RING-TYPE E3 UBIQUITIN TRANSFERASE RCHY1,ZINC COMPND 8 FINGER PROTEIN 363,P53-INDUCED RING-H2 PROTEIN,HPIRH2; COMPND 9 EC: 2.3.2.27; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: THE LAST 6 RESIDUES MIMIC POLY-ALA DEGRON SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RCHY1, ARNIP, CHIMP, PIRH2, RNF199, ZNF363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 LIGASE, LIGASE, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,X.YAN,Y.LI REVDAT 3 29-MAY-24 7YNX 1 REMARK REVDAT 2 17-MAY-23 7YNX 1 COMPND JRNL REVDAT 1 26-APR-23 7YNX 0 JRNL AUTH X.WANG,Y.LI,X.YAN,Q.YANG,B.ZHANG,Y.ZHANG,X.YUAN,C.JIANG, JRNL AUTH 2 D.CHEN,Q.LIU,T.LIU,W.MI,Y.YU,C.DONG JRNL TITL RECOGNITION OF AN ALA-RICH C-DEGRON BY THE E3 LIGASE PIRH2. JRNL REF NAT COMMUN V. 14 2474 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37120596 JRNL DOI 10.1038/S41467-023-38173-6 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 19634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5200 - 5.4000 0.97 1584 168 0.2226 0.2360 REMARK 3 2 5.4000 - 4.2900 0.98 1522 154 0.1938 0.2155 REMARK 3 3 4.2900 - 3.7500 0.97 1499 142 0.1793 0.2129 REMARK 3 4 3.7500 - 3.4100 0.97 1463 147 0.1985 0.2578 REMARK 3 5 3.4100 - 3.1600 0.95 1420 146 0.2116 0.2984 REMARK 3 6 3.1600 - 2.9800 0.94 1419 145 0.2208 0.2820 REMARK 3 7 2.9800 - 2.8300 0.90 1365 133 0.2297 0.2823 REMARK 3 8 2.8300 - 2.7000 0.90 1333 137 0.2414 0.3095 REMARK 3 9 2.7000 - 2.6000 0.86 1277 134 0.2449 0.2837 REMARK 3 10 2.6000 - 2.5100 0.85 1255 131 0.2396 0.3329 REMARK 3 11 2.5100 - 2.4300 0.86 1279 114 0.2611 0.3026 REMARK 3 12 2.4300 - 2.3600 0.82 1233 127 0.2568 0.3480 REMARK 3 13 2.3600 - 2.3000 0.81 1198 109 0.2590 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21662 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.24670 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.5, 0.1 M NACL, 1.6 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 GLU A 7 REMARK 465 ASP A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 GLN A 13 REMARK 465 GLU A 14 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 GLU B 7 REMARK 465 ASP B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 465 GLN B 13 REMARK 465 GLU B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 113 O HOH B 401 1.85 REMARK 500 OE1 GLU B 114 O HOH B 402 2.02 REMARK 500 NE2 GLN A 143 O HOH A 401 2.05 REMARK 500 O HOH A 425 O HOH A 462 2.11 REMARK 500 O HOH B 440 O HOH B 477 2.13 REMARK 500 OE1 GLU A 21 O HOH A 402 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 55.55 37.49 REMARK 500 ASN A 123 38.97 72.64 REMARK 500 ARG A 133 38.61 -142.70 REMARK 500 ARG A 142 37.21 -84.62 REMARK 500 TYR A 181 21.08 -153.53 REMARK 500 LEU A 185 -61.01 -94.43 REMARK 500 MET A 187 -2.98 67.05 REMARK 500 ASN B 123 36.37 74.61 REMARK 500 ARG B 142 42.76 -85.79 REMARK 500 TYR B 181 20.67 -140.26 REMARK 500 MET B 187 -12.41 69.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 466 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 487 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 488 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 489 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 HIS A 22 ND1 104.5 REMARK 620 3 CYS A 40 SG 104.2 95.1 REMARK 620 4 CYS A 43 SG 110.7 113.0 126.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 CYS A 34 SG 130.9 REMARK 620 3 HIS A 44 NE2 89.5 119.1 REMARK 620 4 HIS A 50 NE2 82.0 125.1 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 104.0 REMARK 620 3 CYS A 75 SG 118.7 108.1 REMARK 620 4 CYS A 78 SG 100.7 109.5 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 87 SG REMARK 620 2 CYS A 90 SG 116.7 REMARK 620 3 HIS A 101 ND1 108.5 98.6 REMARK 620 4 CYS A 108 SG 98.4 117.6 117.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 CYS A 105 SG 116.1 REMARK 620 3 HIS A 118 ND1 102.7 105.3 REMARK 620 4 CYS A 125 SG 99.3 118.3 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 119 SG REMARK 620 2 CYS A 122 SG 115.7 REMARK 620 3 HIS A 134 NE2 104.3 119.6 REMARK 620 4 CYS A 136 SG 95.8 117.3 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 145 SG REMARK 620 2 CYS A 148 SG 106.4 REMARK 620 3 HIS A 169 ND1 116.5 89.3 REMARK 620 4 CYS A 172 SG 116.1 110.5 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 164 SG REMARK 620 2 HIS A 166 ND1 98.7 REMARK 620 3 CYS A 183 SG 108.4 118.2 REMARK 620 4 CYS A 186 SG 98.1 114.0 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 20 SG REMARK 620 2 HIS B 22 ND1 101.9 REMARK 620 3 CYS B 40 SG 97.7 98.7 REMARK 620 4 CYS B 43 SG 112.2 115.0 127.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 33 SG REMARK 620 2 CYS B 34 SG 126.8 REMARK 620 3 HIS B 44 NE2 102.2 108.2 REMARK 620 4 HIS B 50 NE2 90.8 121.8 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 62 SG REMARK 620 2 CYS B 65 SG 104.9 REMARK 620 3 CYS B 75 SG 116.8 106.2 REMARK 620 4 CYS B 78 SG 103.4 111.5 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 87 SG REMARK 620 2 CYS B 90 SG 114.3 REMARK 620 3 HIS B 101 ND1 105.0 100.0 REMARK 620 4 CYS B 108 SG 94.0 120.0 123.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 102 SG REMARK 620 2 CYS B 105 SG 115.7 REMARK 620 3 HIS B 118 ND1 104.4 102.6 REMARK 620 4 CYS B 125 SG 99.9 112.6 122.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 119 SG REMARK 620 2 CYS B 122 SG 112.1 REMARK 620 3 HIS B 134 NE2 107.3 131.8 REMARK 620 4 CYS B 136 SG 90.8 113.8 91.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 145 SG REMARK 620 2 CYS B 148 SG 106.0 REMARK 620 3 HIS B 169 ND1 102.0 90.3 REMARK 620 4 CYS B 172 SG 117.6 109.3 126.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 HIS B 166 ND1 113.1 REMARK 620 3 CYS B 183 SG 114.3 106.1 REMARK 620 4 CYS B 186 SG 101.9 111.0 110.6 REMARK 620 N 1 2 3 DBREF 7YNX A 1 191 UNP Q96PM5 ZN363_HUMAN 1 191 DBREF 7YNX B 1 191 UNP Q96PM5 ZN363_HUMAN 1 191 SEQADV 7YNX GLY A 0 UNP Q96PM5 LINKER SEQADV 7YNX GLY A 192 UNP Q96PM5 LINKER SEQADV 7YNX SER A 193 UNP Q96PM5 LINKER SEQADV 7YNX GLY A 194 UNP Q96PM5 LINKER SEQADV 7YNX SER A 195 UNP Q96PM5 LINKER SEQADV 7YNX GLY A 196 UNP Q96PM5 LINKER SEQADV 7YNX ALA A 197 UNP Q96PM5 LINKER SEQADV 7YNX ALA A 198 UNP Q96PM5 LINKER SEQADV 7YNX ALA A 199 UNP Q96PM5 LINKER SEQADV 7YNX ALA A 200 UNP Q96PM5 LINKER SEQADV 7YNX ALA A 201 UNP Q96PM5 LINKER SEQADV 7YNX ALA A 202 UNP Q96PM5 LINKER SEQADV 7YNX GLY B 0 UNP Q96PM5 LINKER SEQADV 7YNX GLY B 192 UNP Q96PM5 LINKER SEQADV 7YNX SER B 193 UNP Q96PM5 LINKER SEQADV 7YNX GLY B 194 UNP Q96PM5 LINKER SEQADV 7YNX SER B 195 UNP Q96PM5 LINKER SEQADV 7YNX GLY B 196 UNP Q96PM5 LINKER SEQADV 7YNX ALA B 197 UNP Q96PM5 LINKER SEQADV 7YNX ALA B 198 UNP Q96PM5 LINKER SEQADV 7YNX ALA B 199 UNP Q96PM5 LINKER SEQADV 7YNX ALA B 200 UNP Q96PM5 LINKER SEQADV 7YNX ALA B 201 UNP Q96PM5 LINKER SEQADV 7YNX ALA B 202 UNP Q96PM5 LINKER SEQRES 1 A 203 GLY MET ALA ALA THR ALA ARG GLU ASP GLY ALA SER GLY SEQRES 2 A 203 GLN GLU ARG GLY GLN ARG GLY CYS GLU HIS TYR ASP ARG SEQRES 3 A 203 GLY CYS LEU LEU LYS ALA PRO CYS CYS ASP LYS LEU TYR SEQRES 4 A 203 THR CYS ARG LEU CYS HIS ASP ASN ASN GLU ASP HIS GLN SEQRES 5 A 203 LEU ASP ARG PHE LYS VAL LYS GLU VAL GLN CYS ILE ASN SEQRES 6 A 203 CYS GLU LYS ILE GLN HIS ALA GLN GLN THR CYS GLU GLU SEQRES 7 A 203 CYS SER THR LEU PHE GLY GLU TYR TYR CYS ASP ILE CYS SEQRES 8 A 203 HIS LEU PHE ASP LYS ASP LYS LYS GLN TYR HIS CYS GLU SEQRES 9 A 203 ASN CYS GLY ILE CYS ARG ILE GLY PRO LYS GLU ASP PHE SEQRES 10 A 203 PHE HIS CYS LEU LYS CYS ASN LEU CYS LEU ALA MET ASN SEQRES 11 A 203 LEU GLN GLY ARG HIS LYS CYS ILE GLU ASN VAL SER ARG SEQRES 12 A 203 GLN ASN CYS PRO ILE CYS LEU GLU ASP ILE HIS THR SER SEQRES 13 A 203 ARG VAL VAL ALA HIS VAL LEU PRO CYS GLY HIS LEU LEU SEQRES 14 A 203 HIS ARG THR CYS TYR GLU GLU MET LEU LYS GLU GLY TYR SEQRES 15 A 203 ARG CYS PRO LEU CYS MET HIS SER ALA LEU GLY SER GLY SEQRES 16 A 203 SER GLY ALA ALA ALA ALA ALA ALA SEQRES 1 B 203 GLY MET ALA ALA THR ALA ARG GLU ASP GLY ALA SER GLY SEQRES 2 B 203 GLN GLU ARG GLY GLN ARG GLY CYS GLU HIS TYR ASP ARG SEQRES 3 B 203 GLY CYS LEU LEU LYS ALA PRO CYS CYS ASP LYS LEU TYR SEQRES 4 B 203 THR CYS ARG LEU CYS HIS ASP ASN ASN GLU ASP HIS GLN SEQRES 5 B 203 LEU ASP ARG PHE LYS VAL LYS GLU VAL GLN CYS ILE ASN SEQRES 6 B 203 CYS GLU LYS ILE GLN HIS ALA GLN GLN THR CYS GLU GLU SEQRES 7 B 203 CYS SER THR LEU PHE GLY GLU TYR TYR CYS ASP ILE CYS SEQRES 8 B 203 HIS LEU PHE ASP LYS ASP LYS LYS GLN TYR HIS CYS GLU SEQRES 9 B 203 ASN CYS GLY ILE CYS ARG ILE GLY PRO LYS GLU ASP PHE SEQRES 10 B 203 PHE HIS CYS LEU LYS CYS ASN LEU CYS LEU ALA MET ASN SEQRES 11 B 203 LEU GLN GLY ARG HIS LYS CYS ILE GLU ASN VAL SER ARG SEQRES 12 B 203 GLN ASN CYS PRO ILE CYS LEU GLU ASP ILE HIS THR SER SEQRES 13 B 203 ARG VAL VAL ALA HIS VAL LEU PRO CYS GLY HIS LEU LEU SEQRES 14 B 203 HIS ARG THR CYS TYR GLU GLU MET LEU LYS GLU GLY TYR SEQRES 15 B 203 ARG CYS PRO LEU CYS MET HIS SER ALA LEU GLY SER GLY SEQRES 16 B 203 SER GLY ALA ALA ALA ALA ALA ALA HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN A 306 1 HET ZN A 307 1 HET ZN A 308 1 HET SO4 A 309 5 HET SO4 A 310 5 HET NA A 311 1 HET NA A 312 1 HET NA A 313 1 HET NA A 314 1 HET NA A 315 1 HET NA A 316 1 HET NA A 317 1 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HET ZN B 306 1 HET ZN B 307 1 HET ZN B 308 1 HET SO4 B 309 5 HET SO4 B 310 5 HET SO4 B 311 5 HET NA B 312 1 HET NA B 313 1 HET NA B 314 1 HET NA B 315 1 HET NA B 316 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 3 ZN 16(ZN 2+) FORMUL 11 SO4 5(O4 S 2-) FORMUL 13 NA 12(NA 1+) FORMUL 36 HOH *155(H2 O) HELIX 1 AA1 CYS A 40 ASN A 46 1 7 HELIX 2 AA2 ASP A 53 VAL A 57 5 5 HELIX 3 AA3 PRO A 112 GLU A 114 5 3 HELIX 4 AA4 ASN A 129 GLN A 131 5 3 HELIX 5 AA5 ASN A 139 GLN A 143 5 5 HELIX 6 AA6 ARG A 170 LEU A 177 1 8 HELIX 7 AA7 CYS B 40 ASN B 47 1 8 HELIX 8 AA8 ASP B 53 VAL B 57 5 5 HELIX 9 AA9 PRO B 112 GLU B 114 5 3 HELIX 10 AB1 ASN B 129 GLN B 131 5 3 HELIX 11 AB2 ASN B 139 GLN B 143 5 5 HELIX 12 AB3 ARG B 170 LEU B 177 1 8 SHEET 1 AA1 4 LYS A 36 TYR A 38 0 SHEET 2 AA1 4 CYS A 27 ALA A 31 -1 N ALA A 31 O LYS A 36 SHEET 3 AA1 4 GLU A 59 CYS A 62 -1 O GLU A 59 N LYS A 30 SHEET 4 AA1 4 ILE A 68 HIS A 70 -1 O GLN A 69 N VAL A 60 SHEET 1 AA2 2 TYR A 85 CYS A 87 0 SHEET 2 AA2 2 LEU A 92 ASP A 94 -1 O ASP A 94 N TYR A 85 SHEET 1 AA3 2 TYR A 100 CYS A 102 0 SHEET 2 AA3 2 ILE A 107 ARG A 109 -1 O ARG A 109 N TYR A 100 SHEET 1 AA4 2 PHE A 116 CYS A 119 0 SHEET 2 AA4 2 LEU A 124 ALA A 127 -1 O LEU A 126 N PHE A 117 SHEET 1 AA5 3 LEU A 167 HIS A 169 0 SHEET 2 AA5 3 ALA A 159 VAL A 161 -1 N HIS A 160 O LEU A 168 SHEET 3 AA5 3 GLY A 196 ALA A 197 -1 O GLY A 196 N VAL A 161 SHEET 1 AA6 4 LEU B 37 TYR B 38 0 SHEET 2 AA6 4 CYS B 27 LYS B 30 -1 N LEU B 29 O TYR B 38 SHEET 3 AA6 4 GLU B 59 CYS B 62 -1 O GLN B 61 N LEU B 28 SHEET 4 AA6 4 ILE B 68 HIS B 70 -1 O GLN B 69 N VAL B 60 SHEET 1 AA7 2 TYR B 85 CYS B 87 0 SHEET 2 AA7 2 LEU B 92 ASP B 94 -1 O ASP B 94 N TYR B 85 SHEET 1 AA8 2 TYR B 100 CYS B 102 0 SHEET 2 AA8 2 ILE B 107 ARG B 109 -1 O ARG B 109 N TYR B 100 SHEET 1 AA9 2 PHE B 116 CYS B 119 0 SHEET 2 AA9 2 LEU B 124 ALA B 127 -1 O LEU B 126 N PHE B 117 SHEET 1 AB1 3 LEU B 167 HIS B 169 0 SHEET 2 AB1 3 ALA B 159 VAL B 161 -1 N HIS B 160 O LEU B 168 SHEET 3 AB1 3 GLY B 196 ALA B 197 -1 O GLY B 196 N VAL B 161 LINK SG CYS A 20 ZN ZN A 305 1555 1555 2.53 LINK ND1 HIS A 22 ZN ZN A 305 1555 1555 2.08 LINK SG CYS A 33 ZN ZN A 301 1555 1555 2.28 LINK SG CYS A 34 ZN ZN A 301 1555 1555 2.47 LINK SG CYS A 40 ZN ZN A 305 1555 1555 2.49 LINK SG CYS A 43 ZN ZN A 305 1555 1555 2.38 LINK NE2 HIS A 44 ZN ZN A 301 1555 1555 2.25 LINK NE2 HIS A 50 ZN ZN A 301 1555 1555 2.37 LINK SG CYS A 62 ZN ZN A 302 1555 1555 2.52 LINK SG CYS A 65 ZN ZN A 302 1555 1555 2.42 LINK SG CYS A 75 ZN ZN A 302 1555 1555 2.35 LINK SG CYS A 78 ZN ZN A 302 1555 1555 2.37 LINK SG CYS A 87 ZN ZN A 306 1555 1555 2.52 LINK SG CYS A 90 ZN ZN A 306 1555 1555 2.50 LINK ND1 HIS A 101 ZN ZN A 306 1555 1555 2.12 LINK SG CYS A 102 ZN ZN A 303 1555 1555 2.43 LINK SG CYS A 105 ZN ZN A 303 1555 1555 2.27 LINK SG CYS A 108 ZN ZN A 306 1555 1555 2.47 LINK ND1 HIS A 118 ZN ZN A 303 1555 1555 2.02 LINK SG CYS A 119 ZN ZN A 308 1555 1555 2.48 LINK SG CYS A 122 ZN ZN A 308 1555 1555 2.38 LINK SG CYS A 125 ZN ZN A 303 1555 1555 2.46 LINK NE2 HIS A 134 ZN ZN A 308 1555 1555 2.16 LINK SG CYS A 136 ZN ZN A 308 1555 1555 2.38 LINK SG CYS A 145 ZN ZN A 307 1555 1555 2.44 LINK SG CYS A 148 ZN ZN A 307 1555 1555 2.48 LINK SG CYS A 164 ZN ZN A 304 1555 1555 2.44 LINK ND1 HIS A 166 ZN ZN A 304 1555 1555 2.23 LINK ND1 HIS A 169 ZN ZN A 307 1555 1555 2.12 LINK SG CYS A 172 ZN ZN A 307 1555 1555 2.42 LINK SG CYS A 183 ZN ZN A 304 1555 1555 2.28 LINK SG CYS A 186 ZN ZN A 304 1555 1555 2.40 LINK SG CYS B 20 ZN ZN B 301 1555 1555 2.51 LINK ND1 HIS B 22 ZN ZN B 301 1555 1555 2.08 LINK SG CYS B 33 ZN ZN B 302 1555 1555 2.53 LINK SG CYS B 34 ZN ZN B 302 1555 1555 2.47 LINK SG CYS B 40 ZN ZN B 301 1555 1555 2.56 LINK SG CYS B 43 ZN ZN B 301 1555 1555 2.22 LINK NE2 HIS B 44 ZN ZN B 302 1555 1555 2.28 LINK NE2 HIS B 50 ZN ZN B 302 1555 1555 2.24 LINK SG CYS B 62 ZN ZN B 303 1555 1555 2.40 LINK SG CYS B 65 ZN ZN B 303 1555 1555 2.35 LINK SG CYS B 75 ZN ZN B 303 1555 1555 2.30 LINK SG CYS B 78 ZN ZN B 303 1555 1555 2.42 LINK SG CYS B 87 ZN ZN B 304 1555 1555 2.58 LINK SG CYS B 90 ZN ZN B 304 1555 1555 2.31 LINK ND1 HIS B 101 ZN ZN B 304 1555 1555 2.12 LINK SG CYS B 102 ZN ZN B 305 1555 1555 2.34 LINK SG CYS B 105 ZN ZN B 305 1555 1555 2.35 LINK SG CYS B 108 ZN ZN B 304 1555 1555 2.51 LINK ND1 HIS B 118 ZN ZN B 305 1555 1555 2.03 LINK SG CYS B 119 ZN ZN B 308 1555 1555 2.58 LINK SG CYS B 122 ZN ZN B 308 1555 1555 2.27 LINK SG CYS B 125 ZN ZN B 305 1555 1555 2.35 LINK NE2 HIS B 134 ZN ZN B 308 1555 1555 1.99 LINK SG CYS B 136 ZN ZN B 308 1555 1555 2.51 LINK SG CYS B 145 ZN ZN B 307 1555 1555 2.43 LINK SG CYS B 148 ZN ZN B 307 1555 1555 2.39 LINK SG CYS B 164 ZN ZN B 306 1555 1555 2.39 LINK ND1 HIS B 166 ZN ZN B 306 1555 1555 2.25 LINK ND1 HIS B 169 ZN ZN B 307 1555 1555 2.17 LINK SG CYS B 172 ZN ZN B 307 1555 1555 2.31 LINK SG CYS B 183 ZN ZN B 306 1555 1555 2.26 LINK SG CYS B 186 ZN ZN B 306 1555 1555 2.43 CISPEP 1 GLY A 111 PRO A 112 0 8.44 CISPEP 2 GLY B 111 PRO B 112 0 3.23 CRYST1 69.470 80.270 84.870 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014395 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011783 0.00000