HEADER HYDROLASE 10-AUG-22 7YRP TITLE CRYSTAL STRUCTURE OF VIM-28 METALLO-BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-28; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-28; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIMIZU-IBUKA,H.SATO REVDAT 2 29-NOV-23 7YRP 1 REMARK REVDAT 1 21-JUN-23 7YRP 0 JRNL AUTH A.SHIMIZU-IBUKA,H.SATO JRNL TITL CRYSTAL STRUCTURE OF VIM-28 METALLO-BETA-LACTAMASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.965 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00100 REMARK 3 B22 (A**2) : 0.00200 REMARK 3 B33 (A**2) : -0.00100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3527 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3171 ; 0.044 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4823 ; 1.390 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7375 ; 0.968 ; 1.559 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 6.973 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 9.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;15.135 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4077 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 659 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 618 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 29 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1705 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 247 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.083 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1814 ; 2.206 ; 3.003 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1814 ; 2.206 ; 3.003 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2265 ; 3.144 ; 4.481 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2266 ; 3.144 ; 4.485 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1713 ; 3.056 ; 3.376 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1714 ; 3.055 ; 3.377 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2556 ; 4.690 ; 4.914 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2557 ; 4.689 ; 4.915 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7YRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43247 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 67.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M AMMONIUM CITRATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.68000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.68000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 HIS A 259 REMARK 465 LYS A 260 REMARK 465 ASN A 261 REMARK 465 ARG A 262 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 MET B 20 REMARK 465 SER B 21 REMARK 465 PRO B 22 REMARK 465 LEU B 23 REMARK 465 ALA B 24 REMARK 465 HIS B 25 REMARK 465 SER B 26 REMARK 465 GLY B 27 REMARK 465 GLU B 28 REMARK 465 PRO B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 ALA B 258 REMARK 465 HIS B 259 REMARK 465 LYS B 260 REMARK 465 ASN B 261 REMARK 465 ARG B 262 REMARK 465 SER B 263 REMARK 465 VAL B 264 REMARK 465 ALA B 265 REMARK 465 GLU B 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 147.00 75.42 REMARK 500 TRP A 87 74.56 72.30 REMARK 500 ALA A 178 -105.05 -150.72 REMARK 500 ASP B 84 148.22 80.28 REMARK 500 TRP B 87 73.25 72.99 REMARK 500 ALA B 178 -104.96 -153.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 225 0.14 SIDE CHAIN REMARK 500 ARG B 119 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 99.7 REMARK 620 3 HIS A 179 NE2 108.1 110.3 REMARK 620 4 FLC A 301 OB1 118.8 114.7 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 91.6 REMARK 620 3 HIS A 240 NE2 90.1 107.8 REMARK 620 4 FLC A 301 OA1 162.7 105.6 85.0 REMARK 620 5 FLC A 301 OB1 95.6 99.3 152.1 81.5 REMARK 620 6 FLC A 301 OHB 76.8 162.3 85.9 86.3 69.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 100.9 REMARK 620 3 HIS B 179 NE2 106.2 113.8 REMARK 620 4 FLC B 301 OB2 115.1 114.9 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 CYS B 198 SG 88.4 REMARK 620 3 HIS B 240 NE2 92.7 102.3 REMARK 620 4 FLC B 301 OA2 165.4 106.2 84.6 REMARK 620 5 FLC B 301 OB2 91.6 101.7 155.7 85.3 REMARK 620 6 FLC B 301 OHB 80.5 165.5 87.6 85.1 69.6 REMARK 620 N 1 2 3 4 5 DBREF 7YRP A 21 266 UNP F8UTU0 F8UTU0_PSEAI 21 266 DBREF 7YRP B 21 266 UNP F8UTU0 F8UTU0_PSEAI 21 266 SEQADV 7YRP MET A 20 UNP F8UTU0 INITIATING METHIONINE SEQADV 7YRP MET B 20 UNP F8UTU0 INITIATING METHIONINE SEQRES 1 A 247 MET SER PRO LEU ALA HIS SER GLY GLU PRO SER GLY GLU SEQRES 2 A 247 TYR PRO THR VAL ASN GLU ILE PRO VAL GLY GLU VAL ARG SEQRES 3 A 247 LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE ALA SEQRES 4 A 247 THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN GLY SEQRES 5 A 247 LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE ASP SEQRES 6 A 247 THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU ALA SEQRES 7 A 247 GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG ALA SEQRES 8 A 247 VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY VAL SEQRES 9 A 247 ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SER SEQRES 10 A 247 PRO SER THR ARG ARG LEU ALA GLU ALA GLU GLY ASN GLU SEQRES 11 A 247 ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SER GLY SEQRES 12 A 247 ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR PRO SEQRES 13 A 247 GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR VAL SEQRES 14 A 247 PRO SER ALA ASN VAL LEU TYR GLY GLY CYS ALA VAL LEU SEQRES 15 A 247 GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA ASP ALA SEQRES 16 A 247 ASP LEU ALA GLU TRP PRO THR SER VAL GLU ARG ILE GLN SEQRES 17 A 247 LYS HIS TYR PRO GLU ALA GLU VAL VAL ILE PRO GLY HIS SEQRES 18 A 247 GLY LEU PRO GLY GLY LEU ASP LEU LEU GLN HIS THR ALA SEQRES 19 A 247 ASN VAL VAL LYS ALA HIS LYS ASN ARG SER VAL ALA GLU SEQRES 1 B 247 MET SER PRO LEU ALA HIS SER GLY GLU PRO SER GLY GLU SEQRES 2 B 247 TYR PRO THR VAL ASN GLU ILE PRO VAL GLY GLU VAL ARG SEQRES 3 B 247 LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE ALA SEQRES 4 B 247 THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN GLY SEQRES 5 B 247 LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE ASP SEQRES 6 B 247 THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU ALA SEQRES 7 B 247 GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG ALA SEQRES 8 B 247 VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY VAL SEQRES 9 B 247 ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SER SEQRES 10 B 247 PRO SER THR ARG ARG LEU ALA GLU ALA GLU GLY ASN GLU SEQRES 11 B 247 ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SER GLY SEQRES 12 B 247 ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR PRO SEQRES 13 B 247 GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR VAL SEQRES 14 B 247 PRO SER ALA ASN VAL LEU TYR GLY GLY CYS ALA VAL LEU SEQRES 15 B 247 GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA ASP ALA SEQRES 16 B 247 ASP LEU ALA GLU TRP PRO THR SER VAL GLU ARG ILE GLN SEQRES 17 B 247 LYS HIS TYR PRO GLU ALA GLU VAL VAL ILE PRO GLY HIS SEQRES 18 B 247 GLY LEU PRO GLY GLY LEU ASP LEU LEU GLN HIS THR ALA SEQRES 19 B 247 ASN VAL VAL LYS ALA HIS LYS ASN ARG SER VAL ALA GLU HET FLC A 301 13 HET ZN A 302 1 HET ZN A 303 1 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET FLC B 301 13 HET ZN B 302 1 HET ZN B 303 1 HET GOL B 304 6 HET GOL B 305 6 HETNAM FLC CITRATE ANION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FLC 2(C6 H5 O7 3-) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 15 HOH *244(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 VAL A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ALA A 258 1 13 HELIX 9 AA9 THR B 35 ILE B 39 5 5 HELIX 10 AB1 GLY B 88 ILE B 103 1 16 HELIX 11 AB2 HIS B 116 GLY B 121 1 6 HELIX 12 AB3 GLY B 122 ALA B 129 1 8 HELIX 13 AB4 SER B 136 GLY B 147 1 12 HELIX 14 AB5 CYS B 198 VAL B 200 5 3 HELIX 15 AB6 GLU B 218 TYR B 230 1 13 HELIX 16 AB7 LEU B 246 LYS B 257 1 12 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O SER A 55 N TYR A 47 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O TYR A 67 N GLN A 60 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N THR A 108 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 VAL A 235 PRO A 238 1 O VAL A 235 N LEU A 194 SHEET 1 AA3 7 VAL B 44 ALA B 50 0 SHEET 2 AA3 7 VAL B 53 PHE B 62 -1 O ILE B 57 N ARG B 45 SHEET 3 AA3 7 ALA B 65 ASP B 76 -1 O ILE B 73 N TRP B 54 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O ILE B 83 N LEU B 72 SHEET 5 AA3 7 VAL B 107 VAL B 111 1 O ARG B 109 N LEU B 82 SHEET 6 AA3 7 ALA B 132 ALA B 135 1 O TYR B 134 N ALA B 110 SHEET 7 AA3 7 HIS B 153 SER B 154 1 O HIS B 153 N THR B 133 SHEET 1 AA4 5 ALA B 164 PHE B 167 0 SHEET 2 AA4 5 VAL B 170 PHE B 173 -1 O VAL B 170 N PHE B 167 SHEET 3 AA4 5 VAL B 185 VAL B 188 -1 O TYR B 187 N GLU B 171 SHEET 4 AA4 5 VAL B 193 GLY B 197 -1 O TYR B 195 N VAL B 186 SHEET 5 AA4 5 VAL B 235 PRO B 238 1 O VAL B 235 N LEU B 194 LINK NE2 HIS A 114 ZN ZN A 302 1555 1555 2.12 LINK ND1 HIS A 116 ZN ZN A 302 1555 1555 1.98 LINK OD2 ASP A 118 ZN ZN A 303 1555 1555 2.29 LINK NE2 HIS A 179 ZN ZN A 302 1555 1555 2.05 LINK SG CYS A 198 ZN ZN A 303 1555 1555 2.37 LINK NE2 HIS A 240 ZN ZN A 303 1555 1555 2.09 LINK OB1 FLC A 301 ZN ZN A 302 1555 1555 1.89 LINK OA1 FLC A 301 ZN ZN A 303 1555 1555 2.29 LINK OB1 FLC A 301 ZN ZN A 303 1555 1555 2.40 LINK OHB FLC A 301 ZN ZN A 303 1555 1555 2.19 LINK NE2 HIS B 114 ZN ZN B 302 1555 1555 2.29 LINK ND1 HIS B 116 ZN ZN B 302 1555 1555 1.99 LINK OD2 ASP B 118 ZN ZN B 303 1555 1555 2.25 LINK NE2 HIS B 179 ZN ZN B 302 1555 1555 2.07 LINK SG CYS B 198 ZN ZN B 303 1555 1555 2.50 LINK NE2 HIS B 240 ZN ZN B 303 1555 1555 2.12 LINK OB2 FLC B 301 ZN ZN B 302 1555 1555 1.93 LINK OA2 FLC B 301 ZN ZN B 303 1555 1555 2.37 LINK OB2 FLC B 301 ZN ZN B 303 1555 1555 2.38 LINK OHB FLC B 301 ZN ZN B 303 1555 1555 2.18 CRYST1 139.360 45.910 103.260 90.00 103.59 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007176 0.000000 0.001735 0.00000 SCALE2 0.000000 0.021782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009963 0.00000