HEADER STRUCTURAL PROTEIN 10-AUG-22 7YRQ TITLE CRYO-EM STRUCTURE OF HUMAN PEROXISOMAL ABC TRANSPORTER ABCD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADRENOLEUKODYSTROPHY PROTEIN,ALDP; COMPND 5 EC: 3.1.2.-,7.6.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABCD1, ALD; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.CHAO,J.LI-NA,T.LIN REVDAT 1 22-MAR-23 7YRQ 0 JRNL AUTH C.XIONG,L.N.JIA,W.X.XIONG,X.T.WU,L.L.XIONG,T.H.WANG,D.ZHOU, JRNL AUTH 2 Z.HONG,Z.LIU,L.TANG JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION AND JRNL TITL 2 TRANSLOCATION OF HUMAN PEROXISOMAL ABC TRANSPORTER ALDP. JRNL REF SIGNAL TRANSDUCT TARGET THER V. 8 74 2023 JRNL REFN ESSN 2059-3635 JRNL PMID 36810450 JRNL DOI 10.1038/S41392-022-01280-9 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.350 REMARK 3 NUMBER OF PARTICLES : 291703 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7YRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300031449. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : 3D ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF HUMAN REMARK 245 PEROXISOMAL ABC TRANSPORTER REMARK 245 ABCD1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI EAGLE (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6650.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 PRO A 9 REMARK 465 TRP A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 ASN A 13 REMARK 465 THR A 14 REMARK 465 LEU A 15 REMARK 465 LYS A 16 REMARK 465 ARG A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 TYR A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 HIS A 30 REMARK 465 LYS A 31 REMARK 465 VAL A 32 REMARK 465 TYR A 33 REMARK 465 PRO A 34 REMARK 465 LEU A 35 REMARK 465 VAL A 36 REMARK 465 ARG A 37 REMARK 465 GLN A 38 REMARK 465 CYS A 39 REMARK 465 LEU A 40 REMARK 465 ALA A 41 REMARK 465 PRO A 42 REMARK 465 ALA A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 LEU A 46 REMARK 465 GLN A 47 REMARK 465 ALA A 48 REMARK 465 PRO A 49 REMARK 465 ALA A 50 REMARK 465 GLY A 51 REMARK 465 GLU A 52 REMARK 465 PRO A 53 REMARK 465 THR A 54 REMARK 465 GLN A 55 REMARK 465 GLU A 56 REMARK 465 ALA A 57 REMARK 465 SER A 58 REMARK 465 GLY A 59 REMARK 465 VAL A 60 REMARK 465 ALA A 61 REMARK 465 ALA A 62 REMARK 465 ALA A 63 REMARK 465 LYS A 64 REMARK 465 ALA A 65 REMARK 465 PRO A 437 REMARK 465 ARG A 438 REMARK 465 GLU A 439 REMARK 465 LEU A 440 REMARK 465 GLU A 441 REMARK 465 ASP A 442 REMARK 465 ALA A 443 REMARK 465 GLN A 444 REMARK 465 ALA A 445 REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 GLY A 448 REMARK 465 THR A 449 REMARK 465 ILE A 450 REMARK 465 GLY A 451 REMARK 465 ARG A 452 REMARK 465 SER A 453 REMARK 465 GLY A 454 REMARK 465 VAL A 455 REMARK 465 ARG A 456 REMARK 465 VAL A 457 REMARK 465 GLU A 458 REMARK 465 GLY A 459 REMARK 465 LEU A 713 REMARK 465 GLN A 714 REMARK 465 GLU A 715 REMARK 465 LEU A 716 REMARK 465 CYS A 717 REMARK 465 GLN A 718 REMARK 465 ILE A 719 REMARK 465 LEU A 720 REMARK 465 GLY A 721 REMARK 465 GLU A 722 REMARK 465 ALA A 723 REMARK 465 VAL A 724 REMARK 465 ALA A 725 REMARK 465 PRO A 726 REMARK 465 ALA A 727 REMARK 465 HIS A 728 REMARK 465 VAL A 729 REMARK 465 PRO A 730 REMARK 465 ALA A 731 REMARK 465 PRO A 732 REMARK 465 SER A 733 REMARK 465 PRO A 734 REMARK 465 GLN A 735 REMARK 465 GLY A 736 REMARK 465 PRO A 737 REMARK 465 GLY A 738 REMARK 465 GLY A 739 REMARK 465 LEU A 740 REMARK 465 GLN A 741 REMARK 465 GLY A 742 REMARK 465 ALA A 743 REMARK 465 SER A 744 REMARK 465 THR A 745 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 8 REMARK 465 PRO B 9 REMARK 465 TRP B 10 REMARK 465 ARG B 11 REMARK 465 GLY B 12 REMARK 465 ASN B 13 REMARK 465 THR B 14 REMARK 465 LEU B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 THR B 18 REMARK 465 ALA B 19 REMARK 465 VAL B 20 REMARK 465 LEU B 21 REMARK 465 LEU B 22 REMARK 465 ALA B 23 REMARK 465 LEU B 24 REMARK 465 ALA B 25 REMARK 465 ALA B 26 REMARK 465 TYR B 27 REMARK 465 GLY B 28 REMARK 465 ALA B 29 REMARK 465 HIS B 30 REMARK 465 LYS B 31 REMARK 465 VAL B 32 REMARK 465 TYR B 33 REMARK 465 PRO B 34 REMARK 465 LEU B 35 REMARK 465 VAL B 36 REMARK 465 ARG B 37 REMARK 465 GLN B 38 REMARK 465 CYS B 39 REMARK 465 LEU B 40 REMARK 465 ALA B 41 REMARK 465 PRO B 42 REMARK 465 ALA B 43 REMARK 465 ARG B 44 REMARK 465 GLY B 45 REMARK 465 LEU B 46 REMARK 465 GLN B 47 REMARK 465 ALA B 48 REMARK 465 PRO B 49 REMARK 465 ALA B 50 REMARK 465 GLY B 51 REMARK 465 GLU B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 465 GLN B 55 REMARK 465 GLU B 56 REMARK 465 ALA B 57 REMARK 465 SER B 58 REMARK 465 GLY B 59 REMARK 465 VAL B 60 REMARK 465 ALA B 61 REMARK 465 ALA B 62 REMARK 465 ALA B 63 REMARK 465 LYS B 64 REMARK 465 ALA B 65 REMARK 465 GLY B 66 REMARK 465 PRO B 437 REMARK 465 ARG B 438 REMARK 465 GLU B 439 REMARK 465 LEU B 440 REMARK 465 GLU B 441 REMARK 465 ASP B 442 REMARK 465 ALA B 443 REMARK 465 GLN B 444 REMARK 465 ALA B 445 REMARK 465 GLY B 446 REMARK 465 SER B 447 REMARK 465 GLY B 448 REMARK 465 THR B 449 REMARK 465 ILE B 450 REMARK 465 GLY B 451 REMARK 465 ARG B 452 REMARK 465 SER B 453 REMARK 465 GLY B 454 REMARK 465 VAL B 455 REMARK 465 ARG B 456 REMARK 465 VAL B 457 REMARK 465 GLU B 458 REMARK 465 GLY B 459 REMARK 465 LEU B 713 REMARK 465 GLN B 714 REMARK 465 GLU B 715 REMARK 465 LEU B 716 REMARK 465 CYS B 717 REMARK 465 GLN B 718 REMARK 465 ILE B 719 REMARK 465 LEU B 720 REMARK 465 GLY B 721 REMARK 465 GLU B 722 REMARK 465 ALA B 723 REMARK 465 VAL B 724 REMARK 465 ALA B 725 REMARK 465 PRO B 726 REMARK 465 ALA B 727 REMARK 465 HIS B 728 REMARK 465 VAL B 729 REMARK 465 PRO B 730 REMARK 465 ALA B 731 REMARK 465 PRO B 732 REMARK 465 SER B 733 REMARK 465 PRO B 734 REMARK 465 GLN B 735 REMARK 465 GLY B 736 REMARK 465 PRO B 737 REMARK 465 GLY B 738 REMARK 465 GLY B 739 REMARK 465 LEU B 740 REMARK 465 GLN B 741 REMARK 465 GLY B 742 REMARK 465 ALA B 743 REMARK 465 SER B 744 REMARK 465 THR B 745 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 684 CG CD1 CD2 REMARK 470 ASP A 685 CG OD1 OD2 REMARK 470 SER A 686 OG REMARK 470 ARG A 689 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 690 CG CD1 CD2 REMARK 470 SER A 691 OG REMARK 470 LEU A 692 CG CD1 CD2 REMARK 470 THR A 693 OG1 CG2 REMARK 470 GLU A 694 CG CD OE1 OE2 REMARK 470 GLU A 695 CG CD OE1 OE2 REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 GLN A 697 CG CD OE1 NE2 REMARK 470 ARG A 698 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 699 CG CD1 CD2 REMARK 470 GLU A 700 CG CD OE1 OE2 REMARK 470 GLN A 701 CG CD OE1 NE2 REMARK 470 GLN A 702 CG CD OE1 NE2 REMARK 470 LEU A 703 CG CD1 CD2 REMARK 470 ILE A 706 CG1 CG2 CD1 REMARK 470 PRO A 707 CG CD REMARK 470 LYS A 708 CG CD CE NZ REMARK 470 MET A 709 CG SD CE REMARK 470 GLN A 710 CG CD OE1 NE2 REMARK 470 ARG A 711 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 712 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 684 CG CD1 CD2 REMARK 470 ASP B 685 CG OD1 OD2 REMARK 470 SER B 686 OG REMARK 470 ARG B 689 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 690 CG CD1 CD2 REMARK 470 SER B 691 OG REMARK 470 LEU B 692 CG CD1 CD2 REMARK 470 THR B 693 OG1 CG2 REMARK 470 GLU B 694 CG CD OE1 OE2 REMARK 470 GLU B 695 CG CD OE1 OE2 REMARK 470 LYS B 696 CG CD CE NZ REMARK 470 GLN B 697 CG CD OE1 NE2 REMARK 470 ARG B 698 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 699 CG CD1 CD2 REMARK 470 GLU B 700 CG CD OE1 OE2 REMARK 470 GLN B 701 CG CD OE1 NE2 REMARK 470 GLN B 702 CG CD OE1 NE2 REMARK 470 LEU B 703 CG CD1 CD2 REMARK 470 ILE B 706 CG1 CG2 CD1 REMARK 470 PRO B 707 CG CD REMARK 470 LYS B 708 CG CD CE NZ REMARK 470 MET B 709 CG SD CE REMARK 470 GLN B 710 CG CD OE1 NE2 REMARK 470 ARG B 711 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 712 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 707 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 177 -123.96 51.23 REMARK 500 THR A 240 46.79 -82.66 REMARK 500 ALA A 241 18.04 51.43 REMARK 500 ARG A 259 51.68 -93.84 REMARK 500 TYR A 357 52.02 -96.72 REMARK 500 SER A 358 -56.82 -121.58 REMARK 500 GLU A 359 -4.83 -140.56 REMARK 500 LYS A 435 116.02 -161.13 REMARK 500 ARG A 496 78.57 -119.90 REMARK 500 PRO A 536 -8.26 -55.10 REMARK 500 MET A 566 -9.23 80.86 REMARK 500 TYR A 571 -129.74 56.01 REMARK 500 HIS A 584 40.09 70.86 REMARK 500 TRP A 595 -6.92 71.36 REMARK 500 TRP A 601 -5.32 72.05 REMARK 500 SER A 633 -2.19 84.15 REMARK 500 ASP A 638 -59.20 71.99 REMARK 500 ALA A 653 68.58 60.31 REMARK 500 LYS A 680 58.42 39.46 REMARK 500 LEU A 684 87.75 -150.22 REMARK 500 LEU B 87 55.17 -91.38 REMARK 500 THR B 240 46.84 -82.58 REMARK 500 ALA B 241 18.56 51.16 REMARK 500 ARG B 259 53.72 -93.05 REMARK 500 THR B 353 58.32 -104.89 REMARK 500 TYR B 357 53.77 -97.90 REMARK 500 SER B 358 -56.85 -121.44 REMARK 500 GLU B 359 -5.28 -140.49 REMARK 500 GLU B 498 -159.39 -101.53 REMARK 500 PRO B 536 -8.57 -55.05 REMARK 500 ARG B 545 86.38 -150.09 REMARK 500 MET B 566 -3.19 78.19 REMARK 500 GLN B 567 -2.15 76.21 REMARK 500 SER B 572 -141.39 56.53 REMARK 500 GLU B 573 -32.94 -164.45 REMARK 500 TRP B 595 -6.54 70.91 REMARK 500 TRP B 601 -5.01 71.73 REMARK 500 SER B 633 -3.63 72.74 REMARK 500 ASP B 638 -61.80 71.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 684 ASP A 685 148.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 K9G A 801 REMARK 610 K9G B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34064 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN PEROXISOMAL ABC TRANSPORTER ABCD1 DBREF 7YRQ A 1 745 UNP P33897 ABCD1_HUMAN 1 745 DBREF 7YRQ B 1 745 UNP P33897 ABCD1_HUMAN 1 745 SEQRES 1 A 745 MET PRO VAL LEU SER ARG PRO ARG PRO TRP ARG GLY ASN SEQRES 2 A 745 THR LEU LYS ARG THR ALA VAL LEU LEU ALA LEU ALA ALA SEQRES 3 A 745 TYR GLY ALA HIS LYS VAL TYR PRO LEU VAL ARG GLN CYS SEQRES 4 A 745 LEU ALA PRO ALA ARG GLY LEU GLN ALA PRO ALA GLY GLU SEQRES 5 A 745 PRO THR GLN GLU ALA SER GLY VAL ALA ALA ALA LYS ALA SEQRES 6 A 745 GLY MET ASN ARG VAL PHE LEU GLN ARG LEU LEU TRP LEU SEQRES 7 A 745 LEU ARG LEU LEU PHE PRO ARG VAL LEU CYS ARG GLU THR SEQRES 8 A 745 GLY LEU LEU ALA LEU HIS SER ALA ALA LEU VAL SER ARG SEQRES 9 A 745 THR PHE LEU SER VAL TYR VAL ALA ARG LEU ASP GLY ARG SEQRES 10 A 745 LEU ALA ARG CYS ILE VAL ARG LYS ASP PRO ARG ALA PHE SEQRES 11 A 745 GLY TRP GLN LEU LEU GLN TRP LEU LEU ILE ALA LEU PRO SEQRES 12 A 745 ALA THR PHE VAL ASN SER ALA ILE ARG TYR LEU GLU GLY SEQRES 13 A 745 GLN LEU ALA LEU SER PHE ARG SER ARG LEU VAL ALA HIS SEQRES 14 A 745 ALA TYR ARG LEU TYR PHE SER GLN GLN THR TYR TYR ARG SEQRES 15 A 745 VAL SER ASN MET ASP GLY ARG LEU ARG ASN PRO ASP GLN SEQRES 16 A 745 SER LEU THR GLU ASP VAL VAL ALA PHE ALA ALA SER VAL SEQRES 17 A 745 ALA HIS LEU TYR SER ASN LEU THR LYS PRO LEU LEU ASP SEQRES 18 A 745 VAL ALA VAL THR SER TYR THR LEU LEU ARG ALA ALA ARG SEQRES 19 A 745 SER ARG GLY ALA GLY THR ALA TRP PRO SER ALA ILE ALA SEQRES 20 A 745 GLY LEU VAL VAL PHE LEU THR ALA ASN VAL LEU ARG ALA SEQRES 21 A 745 PHE SER PRO LYS PHE GLY GLU LEU VAL ALA GLU GLU ALA SEQRES 22 A 745 ARG ARG LYS GLY GLU LEU ARG TYR MET HIS SER ARG VAL SEQRES 23 A 745 VAL ALA ASN SER GLU GLU ILE ALA PHE TYR GLY GLY HIS SEQRES 24 A 745 GLU VAL GLU LEU ALA LEU LEU GLN ARG SER TYR GLN ASP SEQRES 25 A 745 LEU ALA SER GLN ILE ASN LEU ILE LEU LEU GLU ARG LEU SEQRES 26 A 745 TRP TYR VAL MET LEU GLU GLN PHE LEU MET LYS TYR VAL SEQRES 27 A 745 TRP SER ALA SER GLY LEU LEU MET VAL ALA VAL PRO ILE SEQRES 28 A 745 ILE THR ALA THR GLY TYR SER GLU SER ASP ALA GLU ALA SEQRES 29 A 745 VAL LYS LYS ALA ALA LEU GLU LYS LYS GLU GLU GLU LEU SEQRES 30 A 745 VAL SER GLU ARG THR GLU ALA PHE THR ILE ALA ARG ASN SEQRES 31 A 745 LEU LEU THR ALA ALA ALA ASP ALA ILE GLU ARG ILE MET SEQRES 32 A 745 SER SER TYR LYS GLU VAL THR GLU LEU ALA GLY TYR THR SEQRES 33 A 745 ALA ARG VAL HIS GLU MET PHE GLN VAL PHE GLU ASP VAL SEQRES 34 A 745 GLN ARG CYS HIS PHE LYS ARG PRO ARG GLU LEU GLU ASP SEQRES 35 A 745 ALA GLN ALA GLY SER GLY THR ILE GLY ARG SER GLY VAL SEQRES 36 A 745 ARG VAL GLU GLY PRO LEU LYS ILE ARG GLY GLN VAL VAL SEQRES 37 A 745 ASP VAL GLU GLN GLY ILE ILE CYS GLU ASN ILE PRO ILE SEQRES 38 A 745 VAL THR PRO SER GLY GLU VAL VAL VAL ALA SER LEU ASN SEQRES 39 A 745 ILE ARG VAL GLU GLU GLY MET HIS LEU LEU ILE THR GLY SEQRES 40 A 745 PRO ASN GLY CYS GLY LYS SER SER LEU PHE ARG ILE LEU SEQRES 41 A 745 GLY GLY LEU TRP PRO THR TYR GLY GLY VAL LEU TYR LYS SEQRES 42 A 745 PRO PRO PRO GLN ARG MET PHE TYR ILE PRO GLN ARG PRO SEQRES 43 A 745 TYR MET SER VAL GLY SER LEU ARG ASP GLN VAL ILE TYR SEQRES 44 A 745 PRO ASP SER VAL GLU ASP MET GLN ARG LYS GLY TYR SER SEQRES 45 A 745 GLU GLN ASP LEU GLU ALA ILE LEU ASP VAL VAL HIS LEU SEQRES 46 A 745 HIS HIS ILE LEU GLN ARG GLU GLY GLY TRP GLU ALA MET SEQRES 47 A 745 CYS ASP TRP LYS ASP VAL LEU SER GLY GLY GLU LYS GLN SEQRES 48 A 745 ARG ILE GLY MET ALA ARG MET PHE TYR HIS ARG PRO LYS SEQRES 49 A 745 TYR ALA LEU LEU ASP GLU CYS THR SER ALA VAL SER ILE SEQRES 50 A 745 ASP VAL GLU GLY LYS ILE PHE GLN ALA ALA LYS ASP ALA SEQRES 51 A 745 GLY ILE ALA LEU LEU SER ILE THR HIS ARG PRO SER LEU SEQRES 52 A 745 TRP LYS TYR HIS THR HIS LEU LEU GLN PHE ASP GLY GLU SEQRES 53 A 745 GLY GLY TRP LYS PHE GLU LYS LEU ASP SER ALA ALA ARG SEQRES 54 A 745 LEU SER LEU THR GLU GLU LYS GLN ARG LEU GLU GLN GLN SEQRES 55 A 745 LEU ALA GLY ILE PRO LYS MET GLN ARG ARG LEU GLN GLU SEQRES 56 A 745 LEU CYS GLN ILE LEU GLY GLU ALA VAL ALA PRO ALA HIS SEQRES 57 A 745 VAL PRO ALA PRO SER PRO GLN GLY PRO GLY GLY LEU GLN SEQRES 58 A 745 GLY ALA SER THR SEQRES 1 B 745 MET PRO VAL LEU SER ARG PRO ARG PRO TRP ARG GLY ASN SEQRES 2 B 745 THR LEU LYS ARG THR ALA VAL LEU LEU ALA LEU ALA ALA SEQRES 3 B 745 TYR GLY ALA HIS LYS VAL TYR PRO LEU VAL ARG GLN CYS SEQRES 4 B 745 LEU ALA PRO ALA ARG GLY LEU GLN ALA PRO ALA GLY GLU SEQRES 5 B 745 PRO THR GLN GLU ALA SER GLY VAL ALA ALA ALA LYS ALA SEQRES 6 B 745 GLY MET ASN ARG VAL PHE LEU GLN ARG LEU LEU TRP LEU SEQRES 7 B 745 LEU ARG LEU LEU PHE PRO ARG VAL LEU CYS ARG GLU THR SEQRES 8 B 745 GLY LEU LEU ALA LEU HIS SER ALA ALA LEU VAL SER ARG SEQRES 9 B 745 THR PHE LEU SER VAL TYR VAL ALA ARG LEU ASP GLY ARG SEQRES 10 B 745 LEU ALA ARG CYS ILE VAL ARG LYS ASP PRO ARG ALA PHE SEQRES 11 B 745 GLY TRP GLN LEU LEU GLN TRP LEU LEU ILE ALA LEU PRO SEQRES 12 B 745 ALA THR PHE VAL ASN SER ALA ILE ARG TYR LEU GLU GLY SEQRES 13 B 745 GLN LEU ALA LEU SER PHE ARG SER ARG LEU VAL ALA HIS SEQRES 14 B 745 ALA TYR ARG LEU TYR PHE SER GLN GLN THR TYR TYR ARG SEQRES 15 B 745 VAL SER ASN MET ASP GLY ARG LEU ARG ASN PRO ASP GLN SEQRES 16 B 745 SER LEU THR GLU ASP VAL VAL ALA PHE ALA ALA SER VAL SEQRES 17 B 745 ALA HIS LEU TYR SER ASN LEU THR LYS PRO LEU LEU ASP SEQRES 18 B 745 VAL ALA VAL THR SER TYR THR LEU LEU ARG ALA ALA ARG SEQRES 19 B 745 SER ARG GLY ALA GLY THR ALA TRP PRO SER ALA ILE ALA SEQRES 20 B 745 GLY LEU VAL VAL PHE LEU THR ALA ASN VAL LEU ARG ALA SEQRES 21 B 745 PHE SER PRO LYS PHE GLY GLU LEU VAL ALA GLU GLU ALA SEQRES 22 B 745 ARG ARG LYS GLY GLU LEU ARG TYR MET HIS SER ARG VAL SEQRES 23 B 745 VAL ALA ASN SER GLU GLU ILE ALA PHE TYR GLY GLY HIS SEQRES 24 B 745 GLU VAL GLU LEU ALA LEU LEU GLN ARG SER TYR GLN ASP SEQRES 25 B 745 LEU ALA SER GLN ILE ASN LEU ILE LEU LEU GLU ARG LEU SEQRES 26 B 745 TRP TYR VAL MET LEU GLU GLN PHE LEU MET LYS TYR VAL SEQRES 27 B 745 TRP SER ALA SER GLY LEU LEU MET VAL ALA VAL PRO ILE SEQRES 28 B 745 ILE THR ALA THR GLY TYR SER GLU SER ASP ALA GLU ALA SEQRES 29 B 745 VAL LYS LYS ALA ALA LEU GLU LYS LYS GLU GLU GLU LEU SEQRES 30 B 745 VAL SER GLU ARG THR GLU ALA PHE THR ILE ALA ARG ASN SEQRES 31 B 745 LEU LEU THR ALA ALA ALA ASP ALA ILE GLU ARG ILE MET SEQRES 32 B 745 SER SER TYR LYS GLU VAL THR GLU LEU ALA GLY TYR THR SEQRES 33 B 745 ALA ARG VAL HIS GLU MET PHE GLN VAL PHE GLU ASP VAL SEQRES 34 B 745 GLN ARG CYS HIS PHE LYS ARG PRO ARG GLU LEU GLU ASP SEQRES 35 B 745 ALA GLN ALA GLY SER GLY THR ILE GLY ARG SER GLY VAL SEQRES 36 B 745 ARG VAL GLU GLY PRO LEU LYS ILE ARG GLY GLN VAL VAL SEQRES 37 B 745 ASP VAL GLU GLN GLY ILE ILE CYS GLU ASN ILE PRO ILE SEQRES 38 B 745 VAL THR PRO SER GLY GLU VAL VAL VAL ALA SER LEU ASN SEQRES 39 B 745 ILE ARG VAL GLU GLU GLY MET HIS LEU LEU ILE THR GLY SEQRES 40 B 745 PRO ASN GLY CYS GLY LYS SER SER LEU PHE ARG ILE LEU SEQRES 41 B 745 GLY GLY LEU TRP PRO THR TYR GLY GLY VAL LEU TYR LYS SEQRES 42 B 745 PRO PRO PRO GLN ARG MET PHE TYR ILE PRO GLN ARG PRO SEQRES 43 B 745 TYR MET SER VAL GLY SER LEU ARG ASP GLN VAL ILE TYR SEQRES 44 B 745 PRO ASP SER VAL GLU ASP MET GLN ARG LYS GLY TYR SER SEQRES 45 B 745 GLU GLN ASP LEU GLU ALA ILE LEU ASP VAL VAL HIS LEU SEQRES 46 B 745 HIS HIS ILE LEU GLN ARG GLU GLY GLY TRP GLU ALA MET SEQRES 47 B 745 CYS ASP TRP LYS ASP VAL LEU SER GLY GLY GLU LYS GLN SEQRES 48 B 745 ARG ILE GLY MET ALA ARG MET PHE TYR HIS ARG PRO LYS SEQRES 49 B 745 TYR ALA LEU LEU ASP GLU CYS THR SER ALA VAL SER ILE SEQRES 50 B 745 ASP VAL GLU GLY LYS ILE PHE GLN ALA ALA LYS ASP ALA SEQRES 51 B 745 GLY ILE ALA LEU LEU SER ILE THR HIS ARG PRO SER LEU SEQRES 52 B 745 TRP LYS TYR HIS THR HIS LEU LEU GLN PHE ASP GLY GLU SEQRES 53 B 745 GLY GLY TRP LYS PHE GLU LYS LEU ASP SER ALA ALA ARG SEQRES 54 B 745 LEU SER LEU THR GLU GLU LYS GLN ARG LEU GLU GLN GLN SEQRES 55 B 745 LEU ALA GLY ILE PRO LYS MET GLN ARG ARG LEU GLN GLU SEQRES 56 B 745 LEU CYS GLN ILE LEU GLY GLU ALA VAL ALA PRO ALA HIS SEQRES 57 B 745 VAL PRO ALA PRO SER PRO GLN GLY PRO GLY GLY LEU GLN SEQRES 58 B 745 GLY ALA SER THR HET K9G A 801 21 HET K9G B 801 21 HETNAM K9G [(2~{R})-1-HEXADECANOYLOXY-3-[OXIDANYL-[2-(TRIMETHYL- HETNAM 2 K9G $L^{4}-AZANYL)ETHOXY]PHOSPHORYL]OXY-PROPAN-2-YL] HETNAM 3 K9G OCTADEC-9-ENOATE FORMUL 3 K9G 2(C42 H83 N O8 P) HELIX 1 AA1 ASN A 68 PHE A 83 1 16 HELIX 2 AA2 CYS A 88 ALA A 100 1 13 HELIX 3 AA3 TYR A 110 ARG A 124 1 15 HELIX 4 AA4 ASP A 126 PHE A 175 1 50 HELIX 5 AA5 ASN A 192 GLU A 199 1 8 HELIX 6 AA6 ASP A 200 LYS A 217 1 18 HELIX 7 AA7 LYS A 217 GLY A 237 1 21 HELIX 8 AA8 ALA A 241 ALA A 247 1 7 HELIX 9 AA9 ALA A 247 ARG A 259 1 13 HELIX 10 AB1 PHE A 261 ASN A 289 1 29 HELIX 11 AB2 ASN A 289 GLY A 297 1 9 HELIX 12 AB3 GLN A 316 GLU A 323 1 8 HELIX 13 AB4 VAL A 328 TYR A 337 1 10 HELIX 14 AB5 VAL A 338 THR A 353 1 16 HELIX 15 AB6 ALA A 362 LYS A 372 1 11 HELIX 16 AB7 LYS A 373 VAL A 378 1 6 HELIX 17 AB8 THR A 382 SER A 404 1 23 HELIX 18 AB9 THR A 410 GLN A 430 1 21 HELIX 19 AC1 SER A 514 GLY A 521 1 8 HELIX 20 AC2 SER A 552 VAL A 557 1 6 HELIX 21 AC3 GLN A 574 VAL A 583 1 10 HELIX 22 AC4 LEU A 585 ARG A 591 5 7 HELIX 23 AC5 SER A 606 HIS A 621 1 16 HELIX 24 AC6 ASP A 638 ALA A 650 1 13 HELIX 25 AC7 PRO A 661 HIS A 667 5 7 HELIX 26 AC8 ASP A 685 ARG A 712 1 28 HELIX 27 AC9 ASN B 68 PHE B 83 1 16 HELIX 28 AD1 ARG B 89 SER B 103 1 15 HELIX 29 AD2 TYR B 110 ARG B 124 1 15 HELIX 30 AD3 ASP B 126 PHE B 175 1 50 HELIX 31 AD4 GLN B 178 VAL B 183 1 6 HELIX 32 AD5 ASN B 192 GLU B 199 1 8 HELIX 33 AD6 VAL B 201 LYS B 217 1 17 HELIX 34 AD7 LYS B 217 GLY B 237 1 21 HELIX 35 AD8 ALA B 241 ALA B 247 1 7 HELIX 36 AD9 LEU B 249 THR B 254 1 6 HELIX 37 AE1 PHE B 261 ASN B 289 1 29 HELIX 38 AE2 ASN B 289 GLY B 297 1 9 HELIX 39 AE3 ILE B 317 LEU B 322 1 6 HELIX 40 AE4 GLN B 332 TYR B 337 1 6 HELIX 41 AE5 VAL B 338 THR B 353 1 16 HELIX 42 AE6 ALA B 362 LYS B 372 1 11 HELIX 43 AE7 LYS B 373 ARG B 381 1 9 HELIX 44 AE8 GLU B 383 SER B 404 1 22 HELIX 45 AE9 SER B 405 VAL B 409 5 5 HELIX 46 AF1 THR B 410 GLN B 430 1 21 HELIX 47 AF2 SER B 514 GLY B 521 1 8 HELIX 48 AF3 SER B 552 VAL B 557 1 6 HELIX 49 AF4 GLU B 573 VAL B 583 1 11 HELIX 50 AF5 HIS B 586 ARG B 591 5 6 HELIX 51 AF6 SER B 606 HIS B 621 1 16 HELIX 52 AF7 ASP B 638 ALA B 650 1 13 HELIX 53 AF8 ARG B 660 HIS B 667 5 8 HELIX 54 AF9 SER B 686 ARG B 712 1 27 SHEET 1 AA1 4 VAL A 468 ASP A 469 0 SHEET 2 AA1 4 VAL A 530 LYS A 533 1 O LEU A 531 N VAL A 468 SHEET 3 AA1 4 ILE A 474 GLU A 477 -1 N ILE A 475 O TYR A 532 SHEET 4 AA1 4 ASN A 494 VAL A 497 -1 O ILE A 495 N CYS A 476 SHEET 1 AA2 2 ILE A 481 VAL A 482 0 SHEET 2 AA2 2 VAL A 488 VAL A 490 -1 O VAL A 489 N ILE A 481 SHEET 1 AA3 4 LEU A 504 ILE A 505 0 SHEET 2 AA3 4 LEU A 655 ILE A 657 1 O SER A 656 N ILE A 505 SHEET 3 AA3 4 LEU A 627 ASP A 629 1 N LEU A 628 O ILE A 657 SHEET 4 AA3 4 TYR A 541 ILE A 542 1 N ILE A 542 O ASP A 629 SHEET 1 AA4 4 VAL B 467 ASP B 469 0 SHEET 2 AA4 4 VAL B 530 LYS B 533 1 O LEU B 531 N VAL B 468 SHEET 3 AA4 4 ILE B 474 VAL B 482 -1 N ILE B 475 O TYR B 532 SHEET 4 AA4 4 VAL B 488 VAL B 497 -1 O ILE B 495 N CYS B 476 SHEET 1 AA5 4 LEU B 504 ILE B 505 0 SHEET 2 AA5 4 LEU B 655 ILE B 657 1 O SER B 656 N ILE B 505 SHEET 3 AA5 4 LEU B 627 ASP B 629 1 N LEU B 628 O LEU B 655 SHEET 4 AA5 4 TYR B 541 ILE B 542 1 N ILE B 542 O ASP B 629 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000