data_7YS5 # _entry.id 7YS5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YS5 pdb_00007ys5 10.2210/pdb7ys5/pdb WWPDB D_1300028916 ? ? BMRB 36505 ? 10.13018/BMR36505 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-09-06 2 'Structure model' 1 1 2023-09-13 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 2 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 3 2 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 4 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7YS5 _pdbx_database_status.recvd_initial_deposition_date 2022-08-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'RET oncogene primer G-quadruplex in Na+' _pdbx_database_related.db_id 36505 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email yinsw@sioc.ac.cn _pdbx_contact_author.name_first sw _pdbx_contact_author.name_last Yin _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0233-9086 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yin, S.' 1 ? 'Cao, C.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'RET G-quadruplex in 10mM Na+' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yin, S.' 1 ? primary 'Cao, C.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3') ; _entity.formula_weight 6394.074 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name RET_10Na # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can GGGGCGGGGCGGGGCGGGGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DG n 1 14 DG n 1 15 DC n 1 16 DG n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 20 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DG 3 3 3 DG GUA A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DC 5 5 5 DC CYT A . n A 1 6 DG 6 6 6 DG GUA A . n A 1 7 DG 7 7 7 DG GUA A . n A 1 8 DG 8 8 8 DG GUA A . n A 1 9 DG 9 9 9 DG GUA A . n A 1 10 DC 10 10 10 DC CYT A . n A 1 11 DG 11 11 11 DG GUA A . n A 1 12 DG 12 12 12 DG GUA A . n A 1 13 DG 13 13 13 DG GUA A . n A 1 14 DG 14 14 14 DG GUA A . n A 1 15 DC 15 15 15 DC CYT A . n A 1 16 DG 16 16 16 DG GUA A . n A 1 17 DG 17 17 17 DG GUA A . n A 1 18 DG 18 18 18 DG GUA A . n A 1 19 DG 19 19 19 DG GUA A . n A 1 20 DT 20 20 20 DT THY A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YS5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7YS5 _struct.title 'RET G-quadruplex in 10mM Na+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YS5 _struct_keywords.text 'G-quadruplex, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7YS5 _struct_ref.pdbx_db_accession 7YS5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7YS5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7YS5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DG 1 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 13 N1 ? ? A DG 1 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 1 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 1 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 2 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 2 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 2 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 2 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 5 N3 ? ? A DG 3 A DC 5 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog12 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 4 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 4 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 7 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 7 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 7 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 8 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 8 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 8 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 9 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 9 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 9 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 16 O6 ? ? A DG 14 A DG 16 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog31 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 19 O6 ? ? A DG 14 A DG 19 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog32 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 16 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 16 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.33 110.10 -6.77 1.00 N 2 1 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 104.01 110.10 -6.09 1.00 N 3 1 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.21 122.90 -3.69 0.60 N 4 2 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.42 110.10 -6.68 1.00 N 5 2 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 104.07 110.10 -6.03 1.00 N 6 2 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.19 122.90 -3.71 0.60 N 7 3 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.25 110.10 -6.85 1.00 N 8 3 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.88 110.10 -6.22 1.00 N 9 3 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.21 122.90 -3.69 0.60 N 10 4 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.36 110.10 -6.74 1.00 N 11 4 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.92 110.10 -6.18 1.00 N 12 4 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.20 122.90 -3.70 0.60 N 13 5 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.38 110.10 -6.72 1.00 N 14 5 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.99 110.10 -6.11 1.00 N 15 5 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.20 122.90 -3.70 0.60 N 16 6 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.36 110.10 -6.74 1.00 N 17 6 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.96 110.10 -6.14 1.00 N 18 6 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.24 122.90 -3.66 0.60 N 19 7 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.31 110.10 -6.79 1.00 N 20 7 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.99 110.10 -6.11 1.00 N 21 7 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.21 122.90 -3.69 0.60 N 22 8 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.38 110.10 -6.72 1.00 N 23 8 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.97 110.10 -6.13 1.00 N 24 8 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.17 122.90 -3.73 0.60 N 25 9 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.35 110.10 -6.75 1.00 N 26 9 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 104.06 110.10 -6.04 1.00 N 27 9 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.21 122.90 -3.69 0.60 N 28 10 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.40 110.10 -6.70 1.00 N 29 10 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.87 110.10 -6.23 1.00 N 30 10 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.23 122.90 -3.67 0.60 N 31 11 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.31 110.10 -6.79 1.00 N 32 11 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 104.00 110.10 -6.10 1.00 N 33 11 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.24 122.90 -3.66 0.60 N 34 12 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.36 110.10 -6.74 1.00 N 35 12 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.91 110.10 -6.19 1.00 N 36 12 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.19 122.90 -3.71 0.60 N 37 13 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.39 110.10 -6.71 1.00 N 38 13 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.92 110.10 -6.18 1.00 N 39 13 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.26 122.90 -3.64 0.60 N 40 14 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.33 110.10 -6.77 1.00 N 41 14 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.93 110.10 -6.17 1.00 N 42 14 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.21 122.90 -3.69 0.60 N 43 15 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.40 110.10 -6.70 1.00 N 44 15 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 104.01 110.10 -6.09 1.00 N 45 15 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.26 122.90 -3.64 0.60 N 46 16 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.31 110.10 -6.79 1.00 N 47 16 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 104.02 110.10 -6.08 1.00 N 48 16 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.27 122.90 -3.63 0.60 N 49 17 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.28 110.10 -6.82 1.00 N 50 17 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.98 110.10 -6.12 1.00 N 51 17 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.25 122.90 -3.65 0.60 N 52 18 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.35 110.10 -6.75 1.00 N 53 18 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 104.02 110.10 -6.08 1.00 N 54 18 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.22 122.90 -3.68 0.60 N 55 19 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.31 110.10 -6.79 1.00 N 56 19 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.94 110.10 -6.16 1.00 N 57 19 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.22 122.90 -3.68 0.60 N 58 20 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 103.26 110.10 -6.84 1.00 N 59 20 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 103.97 110.10 -6.13 1.00 N 60 20 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.23 122.90 -3.67 0.60 N # _pdbx_nmr_ensemble.entry_id 7YS5 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7YS5 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM [U-13C; U-15N] Guanine, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label sample_1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component Guanine _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-13C; U-15N]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-13C HMBC' 2 isotropic # _pdbx_nmr_refine.entry_id 7YS5 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7YS5 'double helix' 7YS5 'parallel strands' 7YS5 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DG 11 1_555 1.609 3.614 -0.065 -2.901 2.728 -89.718 1 A_DG2:DG11_A A 2 ? A 11 ? 6 3 1 A DG 17 1_555 A DG 7 1_555 -1.624 -3.591 -0.059 -0.023 -0.717 90.518 2 A_DG17:DG7_A A 17 ? A 7 ? 6 3 1 A DG 1 1_555 A DG 12 1_555 -1.762 -3.570 0.011 2.840 2.198 88.542 3 A_DG1:DG12_A A 1 ? A 12 ? 6 3 1 A DG 3 1_555 A DG 6 1_555 2.757 2.849 -0.357 5.683 -1.843 -82.424 4 A_DG3:DG6_A A 3 ? A 6 ? 6 3 1 A DG 19 1_555 A DG 9 1_555 -1.266 3.717 0.186 2.789 -0.353 90.815 5 A_DG19:DG9_A A 19 ? A 9 ? 6 3 1 A DG 8 1_555 A DG 18 1_555 1.904 -3.496 0.014 -6.595 -1.395 -88.005 6 A_DG8:DG18_A A 8 ? A 18 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DG 11 1_555 A DG 17 1_555 A DG 7 1_555 1.508 3.665 -0.152 -2.666 2.099 -179.833 -1.832 0.754 -0.152 -1.050 -1.333 -179.833 1 AA_DG2DG17:DG7DG11_AA A 2 ? A 11 ? A 17 ? A 7 ? 1 A DG 17 1_555 A DG 7 1_555 A DG 1 1_555 A DG 12 1_555 2.868 -2.211 1.507 157.506 77.155 -97.051 0.975 1.702 0.069 -38.832 79.272 -176.946 2 AA_DG17DG1:DG12DG7_AA A 17 ? A 7 ? A 1 ? A 12 ? 1 A DG 19 1_555 A DG 9 1_555 A DG 8 1_555 A DG 18 1_555 -0.571 0.332 2.790 4.275 0.497 27.665 0.588 2.032 2.678 1.031 -8.871 27.991 3 AA_DG19DG8:DG18DG9_AA A 19 ? A 9 ? A 8 ? A 18 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 900 ? 2 AVANCE ? Bruker 600 ? # _atom_sites.entry_id 7YS5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_