HEADER GENE REGULATION 13-AUG-22 7YT9 TITLE CRYSTAL STRUCTURE OF AGD1-4 OF ARABIDOPSIS AGDP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGD1-4 OF ARABIDOPSIS AGDP3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DUF6, ATDUF6, AT2G47230, T8I13.7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS AGENET DOMAIN, ROS1, H3K9ME2 BINDING, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHOU,J.DU REVDAT 3 29-MAY-24 7YT9 1 REMARK REVDAT 2 11-JAN-23 7YT9 1 JRNL REVDAT 1 12-OCT-22 7YT9 0 JRNL AUTH X.ZHOU,M.WEI,W.NIE,Y.XI,L.PENG,Q.ZHENG,K.TANG,V.SATHEESH, JRNL AUTH 2 Y.WANG,J.LUO,X.DU,R.LIU,Z.YANG,H.LA,Y.ZHONG,Y.YANG,J.K.ZHU, JRNL AUTH 3 J.DU,M.LEI JRNL TITL THE H3K9ME2-BINDING PROTEIN AGDP3 LIMITS DNA METHYLATION AND JRNL TITL 2 TRANSCRIPTIONAL GENE SILENCING IN ARABIDOPSIS. JRNL REF J INTEGR PLANT BIOL V. 64 2385 2022 JRNL REFN ISSN 1744-7909 JRNL PMID 36149781 JRNL DOI 10.1111/JIPB.13369 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 26331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8100 - 5.4100 0.98 2909 140 0.2117 0.2083 REMARK 3 2 5.4100 - 4.2900 0.98 2749 160 0.1906 0.2184 REMARK 3 3 4.2900 - 3.7500 0.99 2815 119 0.2266 0.3051 REMARK 3 4 3.7500 - 3.4100 1.00 2775 163 0.2849 0.3164 REMARK 3 5 3.4100 - 3.1600 0.99 2759 145 0.2985 0.3355 REMARK 3 6 3.1600 - 2.9800 1.00 2733 165 0.3119 0.3078 REMARK 3 7 2.9800 - 2.8300 1.00 2753 150 0.3797 0.4304 REMARK 3 8 2.8300 - 2.7000 1.00 2773 140 0.3793 0.4268 REMARK 3 9 2.7000 - 2.6000 1.00 2739 144 0.3491 0.3686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0087 14.1464 -56.4433 REMARK 3 T TENSOR REMARK 3 T11: 0.8614 T22: 0.5951 REMARK 3 T33: 0.6022 T12: -0.1371 REMARK 3 T13: -0.0738 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 5.6359 L22: 8.6375 REMARK 3 L33: 7.9497 L12: -0.4112 REMARK 3 L13: 0.5037 L23: -0.1784 REMARK 3 S TENSOR REMARK 3 S11: -0.3987 S12: 0.0386 S13: 0.3772 REMARK 3 S21: -0.8103 S22: 0.4252 S23: 0.1683 REMARK 3 S31: -0.5279 S32: 0.3438 S33: -0.0767 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0947 12.0955 -47.4932 REMARK 3 T TENSOR REMARK 3 T11: 0.4727 T22: 0.5214 REMARK 3 T33: 0.5966 T12: -0.0128 REMARK 3 T13: 0.0755 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.6760 L22: 3.7463 REMARK 3 L33: 8.4124 L12: 1.6017 REMARK 3 L13: -0.8676 L23: -0.5161 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.1525 S13: -0.0032 REMARK 3 S21: -0.3682 S22: 0.2092 S23: -0.2593 REMARK 3 S31: -0.0458 S32: 0.6509 S33: -0.1745 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7114 13.9761 -28.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.5998 T22: 0.4616 REMARK 3 T33: 0.5437 T12: -0.0573 REMARK 3 T13: 0.0205 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 4.4274 L22: 1.5098 REMARK 3 L33: 6.4967 L12: 0.2108 REMARK 3 L13: -2.8231 L23: -1.4393 REMARK 3 S TENSOR REMARK 3 S11: 0.1780 S12: -0.7665 S13: -0.1103 REMARK 3 S21: 0.2628 S22: -0.0679 S23: 0.2334 REMARK 3 S31: -0.2024 S32: 0.1429 S33: -0.2925 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7451 4.8311 -31.7518 REMARK 3 T TENSOR REMARK 3 T11: 0.5634 T22: 0.4730 REMARK 3 T33: 0.7641 T12: -0.0334 REMARK 3 T13: 0.0793 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 4.9846 L22: 6.8956 REMARK 3 L33: 6.3276 L12: -5.8789 REMARK 3 L13: -4.0743 L23: 5.8555 REMARK 3 S TENSOR REMARK 3 S11: -0.2901 S12: -0.0720 S13: -0.7600 REMARK 3 S21: 0.1240 S22: -0.1228 S23: 0.6561 REMARK 3 S31: 0.2536 S32: -0.1824 S33: 0.3304 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4086 4.5964 -9.9277 REMARK 3 T TENSOR REMARK 3 T11: 0.7796 T22: 1.0728 REMARK 3 T33: 0.7627 T12: -0.0299 REMARK 3 T13: 0.1631 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.2627 L22: 7.4212 REMARK 3 L33: 7.9372 L12: -1.7376 REMARK 3 L13: 0.4375 L23: -1.1387 REMARK 3 S TENSOR REMARK 3 S11: -0.4699 S12: -0.8917 S13: 0.0183 REMARK 3 S21: 1.7505 S22: 0.4448 S23: -0.1842 REMARK 3 S31: -0.7053 S32: 0.0231 S33: -0.5691 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8623 -3.8755 -7.0352 REMARK 3 T TENSOR REMARK 3 T11: 0.9775 T22: 0.9160 REMARK 3 T33: 0.8214 T12: 0.0682 REMARK 3 T13: 0.2039 T23: 0.1946 REMARK 3 L TENSOR REMARK 3 L11: 2.2347 L22: 8.7003 REMARK 3 L33: 4.8890 L12: -1.6808 REMARK 3 L13: 2.1084 L23: -5.2560 REMARK 3 S TENSOR REMARK 3 S11: -0.1828 S12: -0.1489 S13: -0.6169 REMARK 3 S21: 0.1530 S22: 0.7433 S23: 1.0542 REMARK 3 S31: 0.0456 S32: -0.0770 S33: -0.3772 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7539 0.1105 -21.4734 REMARK 3 T TENSOR REMARK 3 T11: 0.9475 T22: 0.9873 REMARK 3 T33: 0.7548 T12: -0.3633 REMARK 3 T13: 0.2034 T23: -0.3325 REMARK 3 L TENSOR REMARK 3 L11: 4.0583 L22: 6.3622 REMARK 3 L33: 8.8959 L12: 0.6649 REMARK 3 L13: -2.7304 L23: -5.3840 REMARK 3 S TENSOR REMARK 3 S11: 0.6240 S12: 0.0438 S13: -0.2131 REMARK 3 S21: 0.9311 S22: -0.6906 S23: 0.3546 REMARK 3 S31: -0.1977 S32: -0.0772 S33: 0.2689 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8100 8.0325 -28.5828 REMARK 3 T TENSOR REMARK 3 T11: 0.7560 T22: 1.0375 REMARK 3 T33: 0.8202 T12: -0.1688 REMARK 3 T13: 0.1549 T23: -0.3368 REMARK 3 L TENSOR REMARK 3 L11: 1.1169 L22: 4.3136 REMARK 3 L33: 3.3695 L12: 0.3535 REMARK 3 L13: -0.5147 L23: -2.8621 REMARK 3 S TENSOR REMARK 3 S11: 0.2955 S12: -0.4569 S13: 0.0272 REMARK 3 S21: 0.8244 S22: -0.5235 S23: 0.8537 REMARK 3 S31: -0.1813 S32: -0.0957 S33: 0.2043 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8888 18.4616 -51.4702 REMARK 3 T TENSOR REMARK 3 T11: 0.5037 T22: 0.6080 REMARK 3 T33: 0.5754 T12: 0.0057 REMARK 3 T13: -0.0506 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 8.1734 L22: 7.6671 REMARK 3 L33: 4.9884 L12: 2.6419 REMARK 3 L13: -1.0087 L23: -3.8556 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.1550 S13: 0.3949 REMARK 3 S21: -0.3096 S22: -0.1789 S23: -0.3369 REMARK 3 S31: -0.2226 S32: 0.4637 S33: 0.0636 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.4733 18.2100 -53.5611 REMARK 3 T TENSOR REMARK 3 T11: 0.6892 T22: 0.6894 REMARK 3 T33: 0.6452 T12: 0.0370 REMARK 3 T13: -0.0869 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2599 L22: 2.9677 REMARK 3 L33: 1.6694 L12: 1.1841 REMARK 3 L13: -0.1327 L23: -0.7598 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: 0.0341 S13: 0.1177 REMARK 3 S21: -0.2307 S22: -0.1760 S23: 0.0152 REMARK 3 S31: -0.2045 S32: 0.0158 S33: 0.3036 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 230 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.2408 22.1004 -68.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.7333 T22: 0.6315 REMARK 3 T33: 0.5132 T12: -0.0725 REMARK 3 T13: -0.0771 T23: 0.1116 REMARK 3 L TENSOR REMARK 3 L11: 3.8999 L22: 5.5723 REMARK 3 L33: 5.3916 L12: 0.4083 REMARK 3 L13: -0.2065 L23: 5.2448 REMARK 3 S TENSOR REMARK 3 S11: -0.1405 S12: -0.0313 S13: -0.1602 REMARK 3 S21: 0.2355 S22: -0.3938 S23: -0.0215 REMARK 3 S31: 0.6277 S32: -0.3383 S33: 0.4370 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300028558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26390 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LITHIUM SULFATE, 20% PEG1000 AND REMARK 280 0.1M SODIUM CITRATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.26900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.52450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.60250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.52450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.26900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.60250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.26900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.60250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.52450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.60250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.26900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.52450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 THR A 34 REMARK 465 LYS A 35 REMARK 465 SER A 36 REMARK 465 GLY A 37 REMARK 465 ARG A 38 REMARK 465 LYS A 39 REMARK 465 GLU A 201 REMARK 465 ALA A 202 REMARK 465 ILE A 285 REMARK 465 GLU A 286 REMARK 465 THR A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 ASN A 290 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 54 REMARK 465 SER B 55 REMARK 465 PRO B 56 REMARK 465 LEU B 57 REMARK 465 GLU B 201 REMARK 465 ALA B 202 REMARK 465 VAL B 259 REMARK 465 THR B 260 REMARK 465 ALA B 261 REMARK 465 ALA B 262 REMARK 465 ILE B 285 REMARK 465 GLU B 286 REMARK 465 THR B 287 REMARK 465 PRO B 288 REMARK 465 SER B 289 REMARK 465 ASN B 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 130.84 -38.68 REMARK 500 LYS A 91 -51.38 77.10 REMARK 500 TRP A 135 -32.54 -139.05 REMARK 500 ASP A 163 -132.60 56.85 REMARK 500 GLU A 223 -10.48 84.57 REMARK 500 MET A 228 -12.18 89.45 REMARK 500 HIS A 250 -133.54 51.38 REMARK 500 ALA A 261 -83.29 -141.09 REMARK 500 ASP A 279 -67.67 -145.34 REMARK 500 LYS B 40 121.56 -24.63 REMARK 500 LYS B 91 -23.16 83.98 REMARK 500 ASN B 124 -35.87 -35.97 REMARK 500 TRP B 135 -2.65 -141.16 REMARK 500 LYS B 164 -0.30 76.41 REMARK 500 ALA B 165 -51.13 -127.16 REMARK 500 MET B 228 -0.44 70.54 REMARK 500 GLU B 278 -67.96 -109.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YT9 A 1 290 UNP F4IL23 F4IL23_ARATH 1 290 DBREF 7YT9 B 1 290 UNP F4IL23 F4IL23_ARATH 1 290 SEQADV 7YT9 SER A 0 UNP F4IL23 EXPRESSION TAG SEQADV 7YT9 ALA A 261 UNP F4IL23 LYS 261 ENGINEERED MUTATION SEQADV 7YT9 ALA A 262 UNP F4IL23 GLU 262 ENGINEERED MUTATION SEQADV 7YT9 ALA A 263 UNP F4IL23 GLU 263 ENGINEERED MUTATION SEQADV 7YT9 SER B 0 UNP F4IL23 EXPRESSION TAG SEQADV 7YT9 ALA B 261 UNP F4IL23 LYS 261 ENGINEERED MUTATION SEQADV 7YT9 ALA B 262 UNP F4IL23 GLU 262 ENGINEERED MUTATION SEQADV 7YT9 ALA B 263 UNP F4IL23 GLU 263 ENGINEERED MUTATION SEQRES 1 A 291 SER MET GLU GLU THR ILE ARG LYS GLY SER GLU VAL GLU SEQRES 2 A 291 VAL SER SER THR GLU GLU GLY PHE ALA ASP ALA TRP PHE SEQRES 3 A 291 ARG GLY ILE LEU GLN GLU ASN PRO THR LYS SER GLY ARG SEQRES 4 A 291 LYS LYS LEU ARG VAL ARG TYR LEU THR LEU LEU ASN ASP SEQRES 5 A 291 ASP ALA LEU SER PRO LEU ILE GLU ASN ILE GLU PRO ARG SEQRES 6 A 291 PHE ILE ARG PRO VAL PRO PRO GLU ASN GLU TYR ASN GLY SEQRES 7 A 291 ILE VAL LEU GLU GLU GLY THR VAL VAL ASP ALA ASP HIS SEQRES 8 A 291 LYS ASP GLY TRP TRP THR GLY VAL ILE ILE LYS LYS LEU SEQRES 9 A 291 GLU ASN GLY LYS PHE TRP VAL TYR TYR ASP SER PRO PRO SEQRES 10 A 291 ASP ILE ILE GLU PHE GLU ARG ASN GLN LEU ARG PRO HIS SEQRES 11 A 291 LEU ARG TRP SER GLY TRP LYS TRP LEU ARG PRO ASP ILE SEQRES 12 A 291 GLN GLU LEU ASP LYS SER MET PHE SER SER GLY THR MET SEQRES 13 A 291 ALA GLU VAL SER THR ILE VAL ASP LYS ALA GLU VAL ALA SEQRES 14 A 291 TRP PHE PRO ALA MET ILE ILE LYS GLU ILE GLU VAL ASP SEQRES 15 A 291 GLY GLU LYS LYS PHE ILE VAL LYS ASP CYS ASN LYS HIS SEQRES 16 A 291 LEU SER PHE SER GLY ASP GLU ALA ARG THR ASN SER THR SEQRES 17 A 291 ILE ASP SER SER ARG VAL ARG PRO THR PRO PRO PRO PHE SEQRES 18 A 291 PRO VAL GLU LYS TYR GLU LEU MET ASP ARG VAL GLU VAL SEQRES 19 A 291 PHE ARG GLY SER VAL TRP ARG GLN GLY LEU VAL ARG GLY SEQRES 20 A 291 VAL LEU ASP HIS ASN CYS TYR MET VAL CYS LEU VAL VAL SEQRES 21 A 291 THR ALA ALA ALA PRO VAL VAL LYS HIS SER ASP LEU ARG SEQRES 22 A 291 PRO CYS LYS VAL TRP GLU ASP GLY GLN THR PRO VAL ILE SEQRES 23 A 291 GLU THR PRO SER ASN SEQRES 1 B 291 SER MET GLU GLU THR ILE ARG LYS GLY SER GLU VAL GLU SEQRES 2 B 291 VAL SER SER THR GLU GLU GLY PHE ALA ASP ALA TRP PHE SEQRES 3 B 291 ARG GLY ILE LEU GLN GLU ASN PRO THR LYS SER GLY ARG SEQRES 4 B 291 LYS LYS LEU ARG VAL ARG TYR LEU THR LEU LEU ASN ASP SEQRES 5 B 291 ASP ALA LEU SER PRO LEU ILE GLU ASN ILE GLU PRO ARG SEQRES 6 B 291 PHE ILE ARG PRO VAL PRO PRO GLU ASN GLU TYR ASN GLY SEQRES 7 B 291 ILE VAL LEU GLU GLU GLY THR VAL VAL ASP ALA ASP HIS SEQRES 8 B 291 LYS ASP GLY TRP TRP THR GLY VAL ILE ILE LYS LYS LEU SEQRES 9 B 291 GLU ASN GLY LYS PHE TRP VAL TYR TYR ASP SER PRO PRO SEQRES 10 B 291 ASP ILE ILE GLU PHE GLU ARG ASN GLN LEU ARG PRO HIS SEQRES 11 B 291 LEU ARG TRP SER GLY TRP LYS TRP LEU ARG PRO ASP ILE SEQRES 12 B 291 GLN GLU LEU ASP LYS SER MET PHE SER SER GLY THR MET SEQRES 13 B 291 ALA GLU VAL SER THR ILE VAL ASP LYS ALA GLU VAL ALA SEQRES 14 B 291 TRP PHE PRO ALA MET ILE ILE LYS GLU ILE GLU VAL ASP SEQRES 15 B 291 GLY GLU LYS LYS PHE ILE VAL LYS ASP CYS ASN LYS HIS SEQRES 16 B 291 LEU SER PHE SER GLY ASP GLU ALA ARG THR ASN SER THR SEQRES 17 B 291 ILE ASP SER SER ARG VAL ARG PRO THR PRO PRO PRO PHE SEQRES 18 B 291 PRO VAL GLU LYS TYR GLU LEU MET ASP ARG VAL GLU VAL SEQRES 19 B 291 PHE ARG GLY SER VAL TRP ARG GLN GLY LEU VAL ARG GLY SEQRES 20 B 291 VAL LEU ASP HIS ASN CYS TYR MET VAL CYS LEU VAL VAL SEQRES 21 B 291 THR ALA ALA ALA PRO VAL VAL LYS HIS SER ASP LEU ARG SEQRES 22 B 291 PRO CYS LYS VAL TRP GLU ASP GLY GLN THR PRO VAL ILE SEQRES 23 B 291 GLU THR PRO SER ASN FORMUL 3 HOH *6(H2 O) HELIX 1 AA1 GLU A 62 ARG A 64 5 3 HELIX 2 AA2 PRO A 71 TYR A 75 5 5 HELIX 3 AA3 GLU A 122 ASN A 124 5 3 HELIX 4 AA4 GLU B 62 ARG B 64 5 3 HELIX 5 AA5 PRO B 71 ASN B 76 1 6 HELIX 6 AA6 GLU B 122 ASN B 124 5 3 SHEET 1 AA1 6 ILE A 58 ILE A 61 0 SHEET 2 AA1 6 LEU A 41 TYR A 45 -1 N VAL A 43 O GLU A 59 SHEET 3 AA1 6 ALA A 23 LEU A 29 -1 N ILE A 28 O ARG A 44 SHEET 4 AA1 6 GLY A 93 LYS A 102 -1 O TRP A 94 N TRP A 24 SHEET 5 AA1 6 PHE A 108 TYR A 112 -1 O TRP A 109 N ILE A 100 SHEET 6 AA1 6 ASP A 117 PHE A 121 -1 O ASP A 117 N TYR A 112 SHEET 1 AA2 6 ILE A 66 PRO A 68 0 SHEET 2 AA2 6 GLU A 10 SER A 14 -1 N GLU A 12 O ARG A 67 SHEET 3 AA2 6 ALA A 23 LEU A 29 -1 O PHE A 25 N VAL A 13 SHEET 4 AA2 6 GLY A 93 LYS A 102 -1 O TRP A 94 N TRP A 24 SHEET 5 AA2 6 VAL A 85 ASP A 89 -1 N VAL A 86 O GLY A 97 SHEET 6 AA2 6 LEU A 126 PRO A 128 -1 O ARG A 127 N ASP A 87 SHEET 1 AA3 2 ARG A 131 TRP A 132 0 SHEET 2 AA3 2 TRP A 137 LEU A 138 -1 O LEU A 138 N ARG A 131 SHEET 1 AA4 5 SER A 206 ASP A 209 0 SHEET 2 AA4 5 GLU A 183 LYS A 189 -1 N PHE A 186 O ILE A 208 SHEET 3 AA4 5 GLU A 166 VAL A 180 -1 N LYS A 176 O ILE A 187 SHEET 4 AA4 5 MET A 155 VAL A 162 -1 N ALA A 156 O ALA A 172 SHEET 5 AA4 5 VAL A 213 PRO A 215 -1 O ARG A 214 N GLU A 157 SHEET 1 AA5 5 VAL A 265 LYS A 267 0 SHEET 2 AA5 5 CYS A 252 LEU A 257 -1 N TYR A 253 O VAL A 266 SHEET 3 AA5 5 VAL A 238 LEU A 248 -1 N LEU A 243 O CYS A 256 SHEET 4 AA5 5 ARG A 230 ARG A 235 -1 N VAL A 233 O ARG A 240 SHEET 5 AA5 5 LEU A 271 PRO A 273 -1 O ARG A 272 N GLU A 232 SHEET 1 AA6 2 VAL A 276 TRP A 277 0 SHEET 2 AA6 2 GLN A 281 THR A 282 -1 O THR A 282 N VAL A 276 SHEET 1 AA7 6 GLU B 59 ILE B 61 0 SHEET 2 AA7 6 LEU B 41 TYR B 45 -1 N LEU B 41 O ILE B 61 SHEET 3 AA7 6 ALA B 23 LEU B 29 -1 N ILE B 28 O ARG B 44 SHEET 4 AA7 6 GLY B 93 LYS B 102 -1 O TRP B 94 N TRP B 24 SHEET 5 AA7 6 PHE B 108 TYR B 112 -1 O TRP B 109 N ILE B 100 SHEET 6 AA7 6 ASP B 117 PHE B 121 -1 O ASP B 117 N TYR B 112 SHEET 1 AA8 6 ILE B 66 PRO B 68 0 SHEET 2 AA8 6 GLU B 10 VAL B 13 -1 N GLU B 12 O ARG B 67 SHEET 3 AA8 6 ALA B 23 LEU B 29 -1 O PHE B 25 N VAL B 13 SHEET 4 AA8 6 GLY B 93 LYS B 102 -1 O TRP B 94 N TRP B 24 SHEET 5 AA8 6 VAL B 85 ASP B 89 -1 N VAL B 86 O GLY B 97 SHEET 6 AA8 6 LEU B 126 PRO B 128 -1 O ARG B 127 N ASP B 87 SHEET 1 AA9 2 ARG B 131 TRP B 132 0 SHEET 2 AA9 2 TRP B 137 LEU B 138 -1 O LEU B 138 N ARG B 131 SHEET 1 AB1 5 SER B 206 ASP B 209 0 SHEET 2 AB1 5 GLU B 183 LYS B 189 -1 N PHE B 186 O ILE B 208 SHEET 3 AB1 5 GLU B 166 VAL B 180 -1 N LYS B 176 O ILE B 187 SHEET 4 AB1 5 MET B 155 VAL B 162 -1 N VAL B 162 O GLU B 166 SHEET 5 AB1 5 VAL B 213 PRO B 215 -1 O ARG B 214 N GLU B 157 SHEET 1 AB2 5 VAL B 265 LYS B 267 0 SHEET 2 AB2 5 CYS B 252 LEU B 257 -1 N TYR B 253 O VAL B 266 SHEET 3 AB2 5 VAL B 238 LEU B 248 -1 N GLY B 246 O MET B 254 SHEET 4 AB2 5 ARG B 230 ARG B 235 -1 N VAL B 231 O GLY B 242 SHEET 5 AB2 5 LEU B 271 PRO B 273 -1 O ARG B 272 N GLU B 232 SHEET 1 AB3 2 LYS B 275 TRP B 277 0 SHEET 2 AB3 2 GLN B 281 PRO B 283 -1 O THR B 282 N VAL B 276 CISPEP 1 SER A 114 PRO A 115 0 -3.81 CISPEP 2 SER B 114 PRO B 115 0 -2.39 CRYST1 78.538 129.205 167.049 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012733 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005986 0.00000