HEADER PROTEIN BINDING 17-AUG-22 7YUI TITLE CRYSTAL STRUCTURE OF HOIL-1L(195-423) IN COMPLEX WITH THE LINEAR TITLE 2 TETRA-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1; COMPND 7 CHAIN: B; COMPND 8 EC: 2.3.2.31; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RBCK1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3, UBIQUITINATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.XIAO,L.PAN REVDAT 2 13-MAR-24 7YUI 1 AUTHOR JRNL REVDAT 1 30-AUG-23 7YUI 0 JRNL AUTH X.XU,Y.WANG,Y.ZHANG,Y.WANG,Y.YIN,C.PENG,X.GONG,M.LI,Y.ZHANG, JRNL AUTH 2 M.ZHANG,Y.TANG,X.ZHOU,H.LIU,L.PAN JRNL TITL MECHANISTIC INSIGHTS INTO THE ENZYMATIC ACTIVITY OF E3 JRNL TITL 2 LIGASE HOIL-1L AND ITS REGULATION BY THE LINEAR UBIQUITIN JRNL TITL 3 CHAIN BINDING. JRNL REF SCI ADV V. 9 I4599 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37831767 JRNL DOI 10.1126/SCIADV.ADI4599 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.5870 - 4.9707 0.99 2841 131 0.1769 0.2103 REMARK 3 2 4.9707 - 3.9455 1.00 2720 126 0.1669 0.1947 REMARK 3 3 3.9455 - 3.4467 1.00 2682 128 0.1893 0.2669 REMARK 3 4 3.4467 - 3.1316 1.00 2656 152 0.2349 0.2936 REMARK 3 5 3.1316 - 2.9071 1.00 2645 123 0.2545 0.3312 REMARK 3 6 2.9071 - 2.7357 1.00 2634 144 0.2648 0.3495 REMARK 3 7 2.7357 - 2.5990 0.97 2570 138 0.2948 0.3605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7562 14.9979 -2.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.3032 REMARK 3 T33: 0.2142 T12: 0.0180 REMARK 3 T13: -0.0129 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 3.5009 L22: 1.7110 REMARK 3 L33: 2.1060 L12: -0.6974 REMARK 3 L13: -0.4829 L23: -0.0864 REMARK 3 S TENSOR REMARK 3 S11: 0.1723 S12: -0.1681 S13: -0.0503 REMARK 3 S21: -0.1285 S22: -0.0674 S23: 0.1777 REMARK 3 S31: -0.0605 S32: -0.0911 S33: -0.0675 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6173 12.7325 -16.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.3447 T22: 0.2781 REMARK 3 T33: 0.2824 T12: 0.0086 REMARK 3 T13: -0.0086 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.8342 L22: 0.6116 REMARK 3 L33: 1.7761 L12: -0.0218 REMARK 3 L13: -1.4917 L23: -0.0821 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: 0.1188 S13: -0.2895 REMARK 3 S21: -0.0655 S22: -0.0769 S23: -0.1175 REMARK 3 S31: 0.1862 S32: 0.0565 S33: 0.1059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7608 5.5905 -47.6788 REMARK 3 T TENSOR REMARK 3 T11: 0.5157 T22: 0.5838 REMARK 3 T33: 0.6975 T12: 0.1453 REMARK 3 T13: 0.0400 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 2.3170 L22: 1.0755 REMARK 3 L33: 2.8698 L12: -0.8590 REMARK 3 L13: -1.8046 L23: 0.7643 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: 0.2362 S13: 0.1349 REMARK 3 S21: -0.0735 S22: -0.1968 S23: 0.5879 REMARK 3 S31: -0.1221 S32: -0.8182 S33: 0.2335 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7632 14.8549 -62.6222 REMARK 3 T TENSOR REMARK 3 T11: 0.5017 T22: 0.4069 REMARK 3 T33: 0.6510 T12: 0.0453 REMARK 3 T13: 0.0210 T23: 0.1186 REMARK 3 L TENSOR REMARK 3 L11: 3.1992 L22: 1.9797 REMARK 3 L33: 2.4374 L12: -0.5638 REMARK 3 L13: -0.0357 L23: 0.4588 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: 0.4958 S13: 0.7867 REMARK 3 S21: -0.2466 S22: -0.0845 S23: 0.1174 REMARK 3 S31: -0.4939 S32: -0.2120 S33: -0.1179 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9673 21.3670 -22.9291 REMARK 3 T TENSOR REMARK 3 T11: 0.3629 T22: 0.4772 REMARK 3 T33: 0.2752 T12: 0.1098 REMARK 3 T13: 0.0002 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 6.4518 L22: 3.7641 REMARK 3 L33: 4.4790 L12: 0.7419 REMARK 3 L13: -1.3898 L23: -0.2183 REMARK 3 S TENSOR REMARK 3 S11: 0.4840 S12: 0.9767 S13: 0.4567 REMARK 3 S21: -0.6437 S22: -0.0554 S23: 0.1331 REMARK 3 S31: 0.0750 S32: -0.0597 S33: -0.2979 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5036 20.5349 -29.9803 REMARK 3 T TENSOR REMARK 3 T11: 0.4080 T22: 0.3953 REMARK 3 T33: 0.4097 T12: -0.0246 REMARK 3 T13: 0.0251 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 3.5966 L22: 4.1410 REMARK 3 L33: 4.4623 L12: -2.4398 REMARK 3 L13: -4.0133 L23: 3.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.4368 S12: 0.3338 S13: 0.7614 REMARK 3 S21: -0.4982 S22: -0.0421 S23: -0.4527 REMARK 3 S31: -0.2668 S32: -0.0823 S33: -0.3497 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9452 -4.2218 -38.2002 REMARK 3 T TENSOR REMARK 3 T11: 0.4107 T22: 0.4271 REMARK 3 T33: 0.3629 T12: -0.0280 REMARK 3 T13: 0.0994 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 3.7503 L22: 2.5962 REMARK 3 L33: 5.0515 L12: 0.2159 REMARK 3 L13: -1.3952 L23: -0.5339 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.4272 S13: 0.0311 REMARK 3 S21: 0.5337 S22: 0.0787 S23: 0.0675 REMARK 3 S31: -0.1388 S32: 0.1482 S33: -0.0339 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8791 -0.4042 -58.6577 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.2343 REMARK 3 T33: 0.3895 T12: 0.0063 REMARK 3 T13: 0.0007 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.9463 L22: 0.7975 REMARK 3 L33: 2.5924 L12: 0.9318 REMARK 3 L13: -2.0649 L23: -0.2786 REMARK 3 S TENSOR REMARK 3 S11: 0.1208 S12: -0.0036 S13: 0.2804 REMARK 3 S21: -0.0053 S22: 0.0143 S23: 0.1311 REMARK 3 S31: -0.0859 S32: 0.0559 S33: -0.1188 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 400 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.4131 -2.4271 -80.8469 REMARK 3 T TENSOR REMARK 3 T11: 0.3630 T22: 0.4513 REMARK 3 T33: 0.4309 T12: 0.0040 REMARK 3 T13: -0.0054 T23: 0.0857 REMARK 3 L TENSOR REMARK 3 L11: 8.4214 L22: 6.6725 REMARK 3 L33: 5.4203 L12: -6.6287 REMARK 3 L13: -1.8197 L23: 1.7767 REMARK 3 S TENSOR REMARK 3 S11: 0.4934 S12: 0.3930 S13: -0.0110 REMARK 3 S21: -0.5333 S22: -0.4116 S23: -0.4362 REMARK 3 S31: -0.0519 S32: 0.5918 S33: -0.1265 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL17B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978560 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19702 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.599 REMARK 200 RESOLUTION RANGE LOW (A) : 71.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.15100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7R71, 3B08 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CHLORIDE, 0.1 M TRIS(PH REMARK 280 8), 20 %(W/V)PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.71950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.15200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.71950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.15200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 GLY B 191 REMARK 465 SER B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 142 O HOH A 401 1.81 REMARK 500 O HOH A 440 O HOH B 631 1.97 REMARK 500 N THR B 346 O HOH B 601 2.03 REMARK 500 O HOH A 418 O HOH B 629 2.04 REMARK 500 O ASP A 52 O HOH A 402 2.08 REMARK 500 O HOH B 630 O HOH B 634 2.09 REMARK 500 O ASP A 210 O HOH A 403 2.13 REMARK 500 O GLN A 214 OG SER A 217 2.15 REMARK 500 O GLU A 64 O HOH A 404 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 290 -158.95 -104.34 REMARK 500 VAL B 393 -63.56 -99.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 199 SG REMARK 620 2 CYS B 202 SG 108.7 REMARK 620 3 CYS B 213 SG 111.0 95.5 REMARK 620 4 CYS B 216 SG 99.7 126.9 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 282 SG REMARK 620 2 CYS B 285 SG 124.6 REMARK 620 3 CYS B 308 SG 113.1 85.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 300 SG REMARK 620 2 CYS B 323 SG 143.7 REMARK 620 3 CYS B 332 SG 86.1 129.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 371 SG REMARK 620 2 CYS B 376 SG 106.2 REMARK 620 3 CYS B 391 SG 113.8 103.3 REMARK 620 4 CYS B 394 SG 92.8 138.6 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 399 SG REMARK 620 2 CYS B 402 SG 126.3 REMARK 620 3 HIS B 406 NE2 95.7 116.5 REMARK 620 4 CYS B 411 SG 94.2 115.4 104.5 REMARK 620 N 1 2 3 DBREF 7YUI A 1 304 UNP P0CG48 UBC_HUMAN 77 380 DBREF 7YUI B 195 424 UNP Q9BYM8 HOIL1_HUMAN 195 424 SEQADV 7YUI GLY A -3 UNP P0CG48 EXPRESSION TAG SEQADV 7YUI PRO A -2 UNP P0CG48 EXPRESSION TAG SEQADV 7YUI GLY A -1 UNP P0CG48 EXPRESSION TAG SEQADV 7YUI SER A 0 UNP P0CG48 EXPRESSION TAG SEQADV 7YUI GLY B 191 UNP Q9BYM8 EXPRESSION TAG SEQADV 7YUI SER B 192 UNP Q9BYM8 EXPRESSION TAG SEQADV 7YUI GLU B 193 UNP Q9BYM8 EXPRESSION TAG SEQADV 7YUI PHE B 194 UNP Q9BYM8 EXPRESSION TAG SEQRES 1 A 308 GLY PRO GLY SER MET GLN ILE PHE VAL LYS THR LEU THR SEQRES 2 A 308 GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR SEQRES 3 A 308 ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY SEQRES 4 A 308 ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS SEQRES 5 A 308 GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE SEQRES 6 A 308 GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG SEQRES 7 A 308 GLY GLY MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 8 A 308 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 9 A 308 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 10 A 308 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 11 A 308 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 12 A 308 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 13 A 308 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 14 A 308 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 15 A 308 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 16 A 308 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 17 A 308 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 18 A 308 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 19 A 308 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 20 A 308 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 21 A 308 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 22 A 308 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 23 A 308 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 24 A 308 HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 234 GLY SER GLU PHE VAL GLY TRP GLN CYS PRO GLY CYS THR SEQRES 2 B 234 PHE ILE ASN LYS PRO THR ARG PRO GLY CYS GLU MET CYS SEQRES 3 B 234 CYS ARG ALA ARG PRO GLU ALA TYR GLN VAL PRO ALA SER SEQRES 4 B 234 TYR GLN PRO ASP GLU GLU GLU ARG ALA ARG LEU ALA GLY SEQRES 5 B 234 GLU GLU GLU ALA LEU ARG GLN TYR GLN GLN ARG LYS GLN SEQRES 6 B 234 GLN GLN GLN GLU GLY ASN TYR LEU GLN HIS VAL GLN LEU SEQRES 7 B 234 ASP GLN ARG SER LEU VAL LEU ASN THR GLU PRO ALA GLU SEQRES 8 B 234 CYS PRO VAL CYS TYR SER VAL LEU ALA PRO GLY GLU ALA SEQRES 9 B 234 VAL VAL LEU ARG GLU CYS LEU HIS THR PHE CYS ARG GLU SEQRES 10 B 234 CYS LEU GLN GLY THR ILE ARG ASN SER GLN GLU ALA GLU SEQRES 11 B 234 VAL SER CYS PRO PHE ILE ASP ASN THR TYR SER CYS SER SEQRES 12 B 234 GLY LYS LEU LEU GLU ARG GLU ILE LYS ALA LEU LEU THR SEQRES 13 B 234 PRO GLU ASP TYR GLN ARG PHE LEU ASP LEU GLY ILE SER SEQRES 14 B 234 ILE ALA GLU ASN ARG SER ALA PHE SER TYR HIS CYS LYS SEQRES 15 B 234 THR PRO ASP CYS LYS GLY TRP CYS PHE PHE GLU ASP ASP SEQRES 16 B 234 VAL ASN GLU PHE THR CYS PRO VAL CYS PHE HIS VAL ASN SEQRES 17 B 234 CYS LEU LEU CYS LYS ALA ILE HIS GLU GLN MET ASN CYS SEQRES 18 B 234 LYS GLU TYR GLN GLU ASP LEU ALA LEU ARG ALA GLN ASN HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 505 1 HETNAM ZN ZINC ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 HOH *74(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 THR A 98 GLY A 111 1 14 HELIX 4 AA4 PRO A 113 ASP A 115 5 3 HELIX 5 AA5 THR A 174 GLY A 187 1 14 HELIX 6 AA6 PRO A 189 ASP A 191 5 3 HELIX 7 AA7 LEU A 208 ASN A 212 5 5 HELIX 8 AA8 THR A 250 GLY A 263 1 14 HELIX 9 AA9 PRO A 265 ASP A 267 5 3 HELIX 10 AB1 ASP B 233 LEU B 268 1 36 HELIX 11 AB2 ASP B 269 ARG B 271 5 3 HELIX 12 AB3 CYS B 305 ASN B 315 1 11 HELIX 13 AB4 LEU B 337 LEU B 345 1 9 HELIX 14 AB5 THR B 346 SER B 365 1 20 HELIX 15 AB6 ASN B 410 ALA B 422 1 13 SHEET 1 AA1 5 THR A 12 VAL A 17 0 SHEET 2 AA1 5 MET A 1 LYS A 6 -1 N MET A 1 O VAL A 17 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR A 88 VAL A 93 0 SHEET 2 AA2 5 MET A 77 THR A 83 -1 N MET A 77 O VAL A 93 SHEET 3 AA2 5 THR A 142 LEU A 147 1 O LEU A 143 N LYS A 82 SHEET 4 AA2 5 GLN A 117 PHE A 121 -1 N ILE A 120 O HIS A 144 SHEET 5 AA2 5 LYS A 124 GLN A 125 -1 O LYS A 124 N PHE A 121 SHEET 1 AA3 5 THR A 164 GLU A 168 0 SHEET 2 AA3 5 GLN A 154 LYS A 158 -1 N VAL A 157 O ILE A 165 SHEET 3 AA3 5 SER A 217 LEU A 223 1 O LEU A 219 N PHE A 156 SHEET 4 AA3 5 GLN A 193 PHE A 197 -1 N ARG A 194 O VAL A 222 SHEET 5 AA3 5 LYS A 200 GLN A 201 -1 O LYS A 200 N PHE A 197 SHEET 1 AA4 5 THR A 240 VAL A 245 0 SHEET 2 AA4 5 MET A 229 THR A 235 -1 N ILE A 231 O LEU A 243 SHEET 3 AA4 5 THR A 294 LEU A 299 1 O LEU A 295 N PHE A 232 SHEET 4 AA4 5 GLN A 269 PHE A 273 -1 N ILE A 272 O HIS A 296 SHEET 5 AA4 5 LYS A 276 GLN A 277 -1 O LYS A 276 N PHE A 273 SHEET 1 AA5 2 TRP B 197 GLN B 198 0 SHEET 2 AA5 2 ILE B 205 ASN B 206 -1 O ASN B 206 N TRP B 197 SHEET 1 AA6 3 VAL B 274 LEU B 275 0 SHEET 2 AA6 3 VAL B 295 VAL B 296 -1 O VAL B 296 N VAL B 274 SHEET 3 AA6 3 THR B 303 PHE B 304 -1 O PHE B 304 N VAL B 295 SHEET 1 AA7 2 ALA B 280 GLU B 281 0 SHEET 2 AA7 2 VAL B 288 LEU B 289 -1 O LEU B 289 N ALA B 280 SHEET 1 AA8 2 SER B 368 HIS B 370 0 SHEET 2 AA8 2 TRP B 379 PHE B 381 -1 O CYS B 380 N TYR B 369 SHEET 1 AA9 2 GLU B 388 THR B 390 0 SHEET 2 AA9 2 VAL B 397 CYS B 399 -1 O ASN B 398 N PHE B 389 LINK SG CYS B 199 ZN ZN B 502 1555 1555 2.29 LINK SG CYS B 202 ZN ZN B 502 1555 1555 2.27 LINK SG CYS B 213 ZN ZN B 502 1555 1555 2.45 LINK SG CYS B 216 ZN ZN B 502 1555 1555 2.30 LINK SG CYS B 282 ZN ZN B 504 1555 1555 2.46 LINK SG CYS B 285 ZN ZN B 504 1555 1555 2.24 LINK SG CYS B 300 ZN ZN B 505 1555 1555 2.14 LINK SG CYS B 308 ZN ZN B 504 1555 1555 2.86 LINK SG CYS B 323 ZN ZN B 505 1555 1555 2.18 LINK SG CYS B 332 ZN ZN B 505 1555 1555 2.57 LINK SG CYS B 371 ZN ZN B 501 1555 1555 2.31 LINK SG CYS B 376 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 391 ZN ZN B 501 1555 1555 2.39 LINK SG CYS B 394 ZN ZN B 501 1555 1555 2.42 LINK SG CYS B 399 ZN ZN B 503 1555 1555 2.41 LINK SG CYS B 402 ZN ZN B 503 1555 1555 2.45 LINK NE2 HIS B 406 ZN ZN B 503 1555 1555 2.12 LINK SG CYS B 411 ZN ZN B 503 1555 1555 2.41 CRYST1 58.500 90.304 117.439 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008515 0.00000