HEADER SIGNALING PROTEIN 18-AUG-22 7YV1 TITLE HUMAN K-RAS G12D (GDP-BOUND) IN COMPLEX WITH CYCLIC PEPTIDE INHIBITOR TITLE 2 LUNA18 AND KA30L FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2B OF GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: KA30L FAB H-CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: KA30L FAB L-CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: LUNA18; COMPND 16 CHAIN: I; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3)PLACI; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 20 MOL_ID: 4; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 23 ORGANISM_TAXID: 32630 KEYWDS K-RAS, CYCLIC PEPTIDE, ONCOLOGY, SIGNALING PROTEIN-INHIBITOR COMPLEX, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.IRIE,T.A.FUKAMI,A.MATSUO,K.SAKA,M.NISHIMURA,H.SAITO,T.TORIZAWA, AUTHOR 2 M.TANADA,A.OHTA REVDAT 4 22-NOV-23 7YV1 1 JRNL REVDAT 3 15-NOV-23 7YV1 1 JRNL LINK ATOM REVDAT 2 08-NOV-23 7YV1 1 JRNL REVDAT 1 26-JUL-23 7YV1 0 JRNL AUTH A.OHTA,M.TANADA,S.SHINOHARA,Y.MORITA,K.NAKANO,Y.YAMAGISHI, JRNL AUTH 2 R.TAKANO,S.KARIYUKI,T.IIDA,A.MATSUO,K.OZEKI,T.EMURA, JRNL AUTH 3 Y.SAKURAI,K.TAKANO,A.HIGASHIDA,M.KOJIMA,T.MURAOKA, JRNL AUTH 4 R.TAKEYAMA,T.KATO,K.KIMURA,K.OGAWA,K.OHARA,S.TANAKA, JRNL AUTH 5 Y.KIKUCHI,N.HISADA,R.HAYASHI,Y.NISHIMURA,K.NOMURA, JRNL AUTH 6 T.TACHIBANA,M.IRIE,H.KAWADA,T.TORIZAWA,N.MURAO,T.KOTAKE, JRNL AUTH 7 M.TANAKA,S.ISHIKAWA,T.MIYAKE,M.TAMIYA,M.ARAI,A.CHIYODA, JRNL AUTH 8 S.AKAI,H.SASE,S.KURAMOTO,T.ITO,T.SHIRAISHI,T.KOJIMA,H.IIKURA JRNL TITL VALIDATION OF A NEW METHODOLOGY TO CREATE ORAL DRUGS BEYOND JRNL TITL 2 THE RULE OF 5 FOR INTRACELLULAR TOUGH TARGETS. JRNL REF J.AM.CHEM.SOC. V. 145 24035 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37874670 JRNL DOI 10.1021/JACS.3C07145 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.TANADA,M.TAMIYA,A.MATSUO,A.CHIYODA,K.TAKANO,T.ITO,M.IRIE, REMARK 1 AUTH 2 T.KOTAKE,R.TAKEYAMA,H.KAWADA,R.HAYASHI,S.ISHIKAWA,K.NOMURA, REMARK 1 AUTH 3 N.FURUICHI,Y.MORITA,M.KAGE,S.HASHIMOTO,K.NII,H.SASE,K.OHARA, REMARK 1 AUTH 4 A.OHTA,S.KURAMOTO,Y.NISHIMURA,H.IIKURA,T.SHIRAISHI REMARK 1 TITL DEVELOPMENT OF ORALLY BIOAVAILABLE PEPTIDES TARGETING AN REMARK 1 TITL 2 INTRACELLULAR PROTEIN: FROM A HIT TO A CLINICAL KRAS REMARK 1 TITL 3 INHIBITOR REMARK 1 REF J.AM.CHEM.SOC. 2023 REMARK 1 REFN ESSN 1520-5126 REMARK 1 DOI 10.1021/JACS.3C03886 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (20-APR-2021) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 3 NUMBER OF REFLECTIONS : 97915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4912 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 21.08 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1864 REMARK 3 BIN R VALUE (WORKING SET) : 0.3045 REMARK 3 BIN FREE R VALUE : 0.2916 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 95 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 1072 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52150 REMARK 3 B22 (A**2) : -0.27870 REMARK 3 B33 (A**2) : -0.24280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.118 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.104 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.106 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4904 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6702 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1688 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 849 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4904 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 649 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5169 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.98 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4, STARANISO 2.3.46 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.454 REMARK 200 RESOLUTION RANGE LOW (A) : 58.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 9.350 REMARK 200 R MERGE (I) : 0.13350 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 58.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.49 REMARK 200 R MERGE FOR SHELL (I) : 0.05160 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 43.73 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7VO2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 %V/V TACSIMATE (PH 5.0), 0.1 M TRI REMARK 280 -SODIUM CITRATE (PH 5.6), 16.0 %W/V POLYETHYLENE GLYCOL 3,350, REMARK 280 AND 25 %V/V ETHYLENE GLYCEROL AS A CRYOPROTECTANT, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.80850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.18650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.80850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.18650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 170 REMARK 465 SER A 171 REMARK 465 LYS A 172 REMARK 465 ASP A 173 REMARK 465 GLY A 174 REMARK 465 CYS H 223 REMARK 465 ASP H 224 REMARK 465 LYS H 225 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 GLN H 3 CG CD OE1 NE2 REMARK 470 LYS H 208 CG CD CE NZ REMARK 470 LYS H 213 CG CD CE NZ REMARK 470 LYS L 107 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 149 -5.41 84.70 REMARK 500 SER H 15 -16.39 81.31 REMARK 500 TYR H 33 160.00 67.62 REMARK 500 ARG H 108 129.64 -170.15 REMARK 500 SER L 30 -121.70 54.95 REMARK 500 ALA L 51 -36.06 69.37 REMARK 500 MAA I 3 -162.89 -118.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 534 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 535 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 536 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 537 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 538 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 539 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 541 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 542 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH H 667 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH H 668 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH H 669 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH H 670 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH H 671 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH H 672 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH H 673 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH H 674 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH H 675 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH H 676 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH H 677 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH H 678 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH H 679 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH H 680 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH L 715 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH L 716 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH L 717 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH L 718 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH L 719 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH L 720 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH L 721 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH L 722 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH L 723 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH L 724 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH L 725 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH L 726 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH L 727 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH L 728 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH L 729 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH L 730 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH L 731 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH L 732 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH L 733 DISTANCE = 9.28 ANGSTROMS REMARK 525 HOH I 115 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH I 116 DISTANCE = 6.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O1B 92.1 REMARK 620 3 HOH A 309 O 177.1 88.2 REMARK 620 4 HOH A 313 O 92.6 86.5 90.2 REMARK 620 5 HOH A 316 O 84.5 97.5 92.7 175.2 REMARK 620 6 HOH A 327 O 94.1 169.2 86.0 84.4 91.9 REMARK 620 N 1 2 3 4 5 DBREF 7YV1 A 2 174 UNP P01116 RASK_HUMAN 2 174 DBREF 7YV1 H 1 225 PDB 7YV1 7YV1 1 225 DBREF 7YV1 L 1 214 PDB 7YV1 7YV1 1 214 DBREF 7YV1 I 1 11 PDB 7YV1 7YV1 1 11 SEQADV 7YV1 GLY A -4 UNP P01116 EXPRESSION TAG SEQADV 7YV1 SER A -3 UNP P01116 EXPRESSION TAG SEQADV 7YV1 SER A -2 UNP P01116 EXPRESSION TAG SEQADV 7YV1 GLY A -1 UNP P01116 EXPRESSION TAG SEQADV 7YV1 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 7YV1 SER A 1 UNP P01116 EXPRESSION TAG SEQADV 7YV1 ASP A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 179 GLY SER SER GLY GLY SER THR GLU TYR LYS LEU VAL VAL SEQRES 2 A 179 VAL GLY ALA ASP GLY VAL GLY LYS SER ALA LEU THR ILE SEQRES 3 A 179 GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO SEQRES 4 A 179 THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP SEQRES 5 A 179 GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY SEQRES 6 A 179 GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG SEQRES 7 A 179 THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN SEQRES 8 A 179 THR LYS SER PHE GLU ASP ILE HIS HIS TYR ARG GLU GLN SEQRES 9 A 179 ILE LYS ARG VAL LYS ASP SER GLU ASP VAL PRO MET VAL SEQRES 10 A 179 LEU VAL GLY ASN LYS CYS ASP LEU PRO SER ARG THR VAL SEQRES 11 A 179 ASP THR LYS GLN ALA GLN ASP LEU ALA ARG SER TYR GLY SEQRES 12 A 179 ILE PRO PHE ILE GLU THR SER ALA LYS THR ARG GLN GLY SEQRES 13 A 179 VAL ASP ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG SEQRES 14 A 179 LYS HIS LYS GLU LYS MET SER LYS ASP GLY SEQRES 1 H 225 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 225 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 225 TYR SER ILE SER SER GLY TYR TYR TRP GLY TRP ILE ARG SEQRES 4 H 225 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 225 TYR HIS SER GLY SER THR TYR TYR ASN PRO SER LEU LYS SEQRES 6 H 225 SER ARG VAL THR ILE SER VAL ASP THR SER LYS ASN GLN SEQRES 7 H 225 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 225 ALA VAL TYR TYR CYS ALA ARG GLN ARG TYR TRP SER LYS SEQRES 9 H 225 SER TYR PHE ARG PRO TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 225 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 225 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 225 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 225 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 225 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 225 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 225 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 225 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 225 SER CYS ASP LYS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN SER ILE SER SER TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 214 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 214 ASP SER TYR PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 I 11 MLE ILE MAA 02A 7VU SAR 7W2 PRO AC5 7VN 7WC HET MLE I 1 9 HET MAA I 3 6 HET 02A I 4 6 HET 7VU I 5 14 HET SAR I 6 5 HET 7W2 I 7 18 HET AC5 I 9 8 HET 7VN I 10 10 HET 7WC I 11 11 HET GDP A 201 28 HET MG A 202 1 HETNAM MLE N-METHYLLEUCINE HETNAM MAA N-METHYL-L-ALANINE HETNAM 02A (2S)-AZETIDINE-2-CARBOXYLIC ACID HETNAM 7VU (2S)-2-(ETHYLAMINO)-3-(4-METHYLPHENYL)PROPANOIC ACID HETNAM SAR SARCOSINE HETNAM 7W2 (2S)-2-AZANYL-4-[3,5-BIS(FLUORANYL)-4- HETNAM 2 7W2 (TRIFLUOROMETHYL)PHENYL]BUTANOIC ACID HETNAM AC5 1-AMINOCYCLOPENTANECARBOXYLIC ACID HETNAM 7VN (2S)-2-CYCLOPENTYL-2-(METHYLAMINO)ETHANOIC ACID HETNAM 7WC (3S)-4-(DIMETHYLAMINO)-3-(METHYLAMINO)-4-OXIDANYLIDENE- HETNAM 2 7WC BUTANOIC ACID HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN AC5 CYCLO-LEUCINE FORMUL 4 MLE C7 H15 N O2 FORMUL 4 MAA C4 H9 N O2 FORMUL 4 02A C4 H7 N O2 FORMUL 4 7VU C12 H17 N O2 FORMUL 4 SAR C3 H7 N O2 FORMUL 4 7W2 C11 H10 F5 N O2 FORMUL 4 AC5 C6 H11 N O2 FORMUL 4 7VN C8 H15 N O2 FORMUL 4 7WC C7 H14 N2 O3 FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 MG MG 2+ FORMUL 7 HOH *1072(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 LYS A 169 1 19 HELIX 6 AA6 SER H 28 GLY H 32 5 5 HELIX 7 AA7 LEU H 64 SER H 66 5 3 HELIX 8 AA8 THR H 87 THR H 91 5 5 HELIX 9 AA9 SER H 163 ALA H 165 5 3 HELIX 10 AB1 SER H 194 LEU H 196 5 3 HELIX 11 AB2 LYS H 208 ASN H 211 5 4 HELIX 12 AB3 GLN L 79 PHE L 83 5 5 HELIX 13 AB4 SER L 121 SER L 127 1 7 HELIX 14 AB5 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N CYS A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 GLN H 3 SER H 7 0 SHEET 2 AA2 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA2 4 GLN H 78 LEU H 83 -1 O PHE H 79 N CYS H 22 SHEET 4 AA2 4 VAL H 68 ASP H 73 -1 N ASP H 73 O GLN H 78 SHEET 1 AA3 6 LEU H 11 VAL H 12 0 SHEET 2 AA3 6 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA3 6 ALA H 92 GLN H 99 -1 N TYR H 94 O THR H 114 SHEET 4 AA3 6 TYR H 34 GLN H 40 -1 N ILE H 38 O TYR H 95 SHEET 5 AA3 6 GLU H 47 ILE H 52 -1 O ILE H 49 N TRP H 37 SHEET 6 AA3 6 THR H 58 TYR H 60 -1 O TYR H 59 N SER H 51 SHEET 1 AA4 4 LEU H 11 VAL H 12 0 SHEET 2 AA4 4 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA4 4 ALA H 92 GLN H 99 -1 N TYR H 94 O THR H 114 SHEET 4 AA4 4 PHE H 107 TRP H 110 -1 O ARG H 108 N ARG H 98 SHEET 1 AA5 4 SER H 127 LEU H 131 0 SHEET 2 AA5 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AA5 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AA5 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AA6 4 SER H 127 LEU H 131 0 SHEET 2 AA6 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AA6 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AA6 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AA7 3 THR H 158 TRP H 161 0 SHEET 2 AA7 3 ILE H 202 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AA7 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SHEET 1 AA8 4 MET L 4 SER L 7 0 SHEET 2 AA8 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA8 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA9 6 SER L 10 SER L 14 0 SHEET 2 AA9 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA9 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA9 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AB1 4 SER L 10 SER L 14 0 SHEET 2 AB1 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AB1 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AB1 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB3 4 ALA L 153 LEU L 154 0 SHEET 2 AB3 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB3 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.63 SSBOND 2 CYS H 147 CYS H 203 1555 1555 2.58 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.75 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.47 LINK C MLE I 1 N ILE I 2 1555 1555 1.34 LINK N MLE I 1 CG 7WC I 11 1555 1555 1.36 LINK C ILE I 2 N MAA I 3 1555 1555 1.35 LINK C MAA I 3 N 02A I 4 1555 1555 1.37 LINK C 02A I 4 N 7VU I 5 1555 1555 1.36 LINK C 7VU I 5 N SAR I 6 1555 1555 1.36 LINK C SAR I 6 N 7W2 I 7 1555 1555 1.33 LINK C 7W2 I 7 N PRO I 8 1555 1555 1.35 LINK C PRO I 8 N AC5 I 9 1555 1555 1.34 LINK C AC5 I 9 N 7VN I 10 1555 1555 1.37 LINK C 7VN I 10 N 7WC I 11 1555 1555 1.35 LINK OG SER A 17 MG MG A 202 1555 1555 2.04 LINK O1B GDP A 201 MG MG A 202 1555 1555 2.02 LINK MG MG A 202 O HOH A 309 1555 1555 2.17 LINK MG MG A 202 O HOH A 313 1555 1555 2.19 LINK MG MG A 202 O HOH A 316 1555 1555 2.05 LINK MG MG A 202 O HOH A 327 1555 1555 2.16 CISPEP 1 ARG H 108 PRO H 109 0 -11.85 CISPEP 2 PHE H 153 PRO H 154 0 -8.26 CISPEP 3 GLU H 155 PRO H 156 0 4.03 CISPEP 4 SER L 7 PRO L 8 0 -4.40 CISPEP 5 SER L 7 PRO L 8 0 -5.02 CISPEP 6 TYR L 94 PRO L 95 0 -4.66 CISPEP 7 TYR L 140 PRO L 141 0 -0.23 CISPEP 8 7VU I 5 SAR I 6 0 12.74 CRYST1 65.617 90.373 116.810 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008561 0.00000