HEADER NUCLEAR PROTEIN 19-AUG-22 7YVD TITLE THE CRYSTAL STRUCTURE OF THE PROGERIN C-TERMINAL PEPTIDE AND THE IG- TITLE 2 LIKE DOMAIN OF LAMIN A/C COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMIN-A/C; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 70 KDA LAMIN,RENAL CARCINOMA ANTIGEN NY-REN-32; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LMNA, LMN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NUCLEAR LAMIN, PROGERIN, PREMATURE AGING, HGPS, LAMINOPATHIES, KEYWDS 2 NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.AHN,N.C.HA REVDAT 3 23-OCT-24 7YVD 1 REMARK REVDAT 2 15-NOV-23 7YVD 1 REMARK REVDAT 1 30-AUG-23 7YVD 0 JRNL AUTH J.AHN,N.C.HA JRNL TITL THE CRYSTAL STRUCTURE OF THE PROGERIN C-TERMINAL PEPTIDE AND JRNL TITL 2 THE IG-LIKE DOMAIN OF LAMIN A/C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.510 REMARK 3 FREE R VALUE TEST SET COUNT : 3691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3900 - 6.2000 1.00 2045 146 0.1952 0.1901 REMARK 3 2 6.2000 - 4.9300 1.00 2046 141 0.1608 0.1709 REMARK 3 3 4.9300 - 4.3000 1.00 2034 140 0.1262 0.1348 REMARK 3 4 4.3000 - 3.9100 1.00 2057 148 0.1370 0.1547 REMARK 3 5 3.9100 - 3.6300 1.00 2022 141 0.1445 0.1962 REMARK 3 6 3.6300 - 3.4200 1.00 2049 137 0.1502 0.1707 REMARK 3 7 3.4200 - 3.2500 1.00 2036 142 0.1624 0.1805 REMARK 3 8 3.2500 - 3.1100 1.00 2067 146 0.1741 0.2084 REMARK 3 9 3.1100 - 2.9900 1.00 2033 141 0.1808 0.2720 REMARK 3 10 2.9900 - 2.8800 1.00 2017 145 0.1802 0.2067 REMARK 3 11 2.8800 - 2.7900 1.00 2036 142 0.1860 0.2246 REMARK 3 12 2.7900 - 2.7100 1.00 2065 144 0.1764 0.1811 REMARK 3 13 2.7100 - 2.6400 1.00 2022 143 0.1731 0.2625 REMARK 3 14 2.6400 - 2.5800 1.00 2050 142 0.1746 0.2082 REMARK 3 15 2.5800 - 2.5200 1.00 2035 140 0.1752 0.1848 REMARK 3 16 2.5200 - 2.4600 1.00 2043 141 0.1799 0.2286 REMARK 3 17 2.4600 - 2.4200 1.00 2028 145 0.1720 0.2176 REMARK 3 18 2.4200 - 2.3700 1.00 2043 140 0.1676 0.1905 REMARK 3 19 2.3700 - 2.3300 1.00 2065 141 0.1712 0.2081 REMARK 3 20 2.3300 - 2.2900 1.00 2012 139 0.1701 0.2217 REMARK 3 21 2.2900 - 2.2500 1.00 2022 142 0.1735 0.2239 REMARK 3 22 2.2500 - 2.2200 1.00 2047 141 0.1638 0.2008 REMARK 3 23 2.2200 - 2.1800 1.00 2047 144 0.1634 0.2016 REMARK 3 24 2.1800 - 2.1500 1.00 2019 145 0.1581 0.2010 REMARK 3 25 2.1500 - 2.1200 1.00 2046 142 0.1744 0.2691 REMARK 3 26 2.1200 - 2.1000 0.98 1979 133 0.1803 0.2349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.043 473 REMARK 3 PLANARITY : 0.003 569 REMARK 3 DIHEDRAL : 4.885 435 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 434 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3909 35.4465 -16.6581 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1135 REMARK 3 T33: 0.0981 T12: -0.0025 REMARK 3 T13: -0.0175 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 4.7477 L22: 3.2943 REMARK 3 L33: 3.0594 L12: 0.4550 REMARK 3 L13: -0.7733 L23: 1.6483 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -0.1446 S13: 0.0843 REMARK 3 S21: 0.2589 S22: 0.0027 S23: -0.0440 REMARK 3 S31: 0.2675 S32: -0.0169 S33: -0.0195 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 457 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4271 40.7481 -20.7900 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.2054 REMARK 3 T33: 0.2475 T12: -0.0087 REMARK 3 T13: 0.0082 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.9957 L22: 4.8272 REMARK 3 L33: 3.1511 L12: -1.2899 REMARK 3 L13: -0.0869 L23: 1.7866 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.0757 S13: 0.3548 REMARK 3 S21: -0.4547 S22: -0.2731 S23: 0.3428 REMARK 3 S31: -0.4618 S32: -0.2986 S33: 0.0716 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 474 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1325 35.5327 -21.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1789 REMARK 3 T33: 0.1863 T12: -0.0167 REMARK 3 T13: 0.0327 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 3.3413 L22: 2.9287 REMARK 3 L33: 2.8647 L12: -0.8318 REMARK 3 L13: 0.0068 L23: 2.2234 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: 0.0408 S13: 0.0158 REMARK 3 S21: 0.0180 S22: -0.4187 S23: 0.5215 REMARK 3 S31: -0.0749 S32: -0.5384 S33: 0.2589 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 494 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6741 28.6534 -17.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.1647 REMARK 3 T33: 0.2010 T12: -0.0694 REMARK 3 T13: 0.0643 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.8944 L22: 2.4972 REMARK 3 L33: 2.0439 L12: 0.8624 REMARK 3 L13: -0.0372 L23: 0.8580 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: -0.0309 S13: -0.1684 REMARK 3 S21: 0.6289 S22: -0.2545 S23: 0.2493 REMARK 3 S31: 0.2448 S32: -0.3325 S33: 0.1413 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 532 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6677 30.3253 -25.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.2315 T22: 0.1994 REMARK 3 T33: 0.2333 T12: 0.0157 REMARK 3 T13: -0.0177 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 4.0270 L22: 5.2860 REMARK 3 L33: 0.5940 L12: -4.4559 REMARK 3 L13: -0.1627 L23: -0.2780 REMARK 3 S TENSOR REMARK 3 S11: 0.3739 S12: 0.4707 S13: -0.1084 REMARK 3 S21: -0.4209 S22: -0.3690 S23: 0.0316 REMARK 3 S31: 0.0662 S32: 0.0246 S33: 0.0795 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 421 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8861 37.6671 -20.7696 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1567 REMARK 3 T33: 0.2215 T12: -0.0514 REMARK 3 T13: 0.0002 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 5.4869 L22: 8.8609 REMARK 3 L33: 3.0833 L12: -6.2827 REMARK 3 L13: 2.6604 L23: -4.0814 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.1701 S13: 0.1687 REMARK 3 S21: 0.1399 S22: 0.0634 S23: 0.0169 REMARK 3 S31: -0.2299 S32: -0.0732 S33: -0.1027 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 434 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0893 17.8429 -5.4531 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1295 REMARK 3 T33: 0.1642 T12: 0.0031 REMARK 3 T13: -0.0315 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.2987 L22: 4.0976 REMARK 3 L33: 2.3225 L12: 0.5065 REMARK 3 L13: 0.3190 L23: -1.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.0600 S13: -0.1678 REMARK 3 S21: 0.0650 S22: -0.1241 S23: -0.1992 REMARK 3 S31: 0.2670 S32: 0.1523 S33: 0.0325 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 494 THROUGH 551 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1529 25.9394 -6.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.0946 REMARK 3 T33: 0.1489 T12: -0.0295 REMARK 3 T13: -0.0148 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.9306 L22: 2.1446 REMARK 3 L33: 2.5179 L12: -0.2510 REMARK 3 L13: 0.4609 L23: -1.4861 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.0120 S13: 0.0254 REMARK 3 S21: 0.2119 S22: -0.0966 S23: -0.1087 REMARK 3 S31: -0.1857 S32: 0.1272 S33: 0.1162 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 422 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8687 17.8894 -33.1955 REMARK 3 T TENSOR REMARK 3 T11: 0.1990 T22: 0.1558 REMARK 3 T33: 0.1690 T12: 0.0023 REMARK 3 T13: -0.0633 T23: -0.0868 REMARK 3 L TENSOR REMARK 3 L11: 4.6778 L22: 6.8070 REMARK 3 L33: 2.2624 L12: -3.4908 REMARK 3 L13: -0.5031 L23: -1.0241 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.0068 S13: 0.3109 REMARK 3 S21: 0.2983 S22: -0.1982 S23: 0.1658 REMARK 3 S31: -0.2961 S32: -0.1089 S33: 0.1841 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 434 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2165 -6.7871 -27.2941 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.0885 REMARK 3 T33: 0.0920 T12: 0.0074 REMARK 3 T13: -0.0082 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 6.3608 L22: 4.7749 REMARK 3 L33: 4.3128 L12: -3.8181 REMARK 3 L13: -0.8789 L23: 0.1930 REMARK 3 S TENSOR REMARK 3 S11: 0.2278 S12: 0.0836 S13: 0.0547 REMARK 3 S21: -0.2567 S22: -0.2226 S23: -0.0425 REMARK 3 S31: 0.2592 S32: 0.3072 S33: -0.0417 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 446 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0647 -3.6869 -24.0058 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.1468 REMARK 3 T33: 0.1846 T12: -0.0260 REMARK 3 T13: -0.0067 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 4.1344 L22: 4.3287 REMARK 3 L33: 5.9454 L12: -1.6326 REMARK 3 L13: -1.3627 L23: 1.4988 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.3551 S13: -0.1298 REMARK 3 S21: 0.2512 S22: -0.3809 S23: 0.7236 REMARK 3 S31: -0.1113 S32: -0.5212 S33: 0.3038 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 457 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2768 -11.0378 -20.0422 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.1568 REMARK 3 T33: 0.1505 T12: -0.0139 REMARK 3 T13: 0.0207 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 1.9097 L22: 4.8576 REMARK 3 L33: 3.0396 L12: -0.7067 REMARK 3 L13: 0.3863 L23: -0.3271 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.0703 S13: -0.1590 REMARK 3 S21: -0.0047 S22: 0.0772 S23: -0.5337 REMARK 3 S31: 0.2132 S32: 0.2840 S33: -0.0860 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 474 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3798 -5.7811 -16.4684 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: 0.1399 REMARK 3 T33: 0.1164 T12: -0.0321 REMARK 3 T13: 0.0078 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.3793 L22: 3.8667 REMARK 3 L33: 2.0719 L12: 0.5056 REMARK 3 L13: 0.0043 L23: 0.0662 REMARK 3 S TENSOR REMARK 3 S11: 0.1298 S12: -0.0771 S13: -0.0101 REMARK 3 S21: 0.4119 S22: -0.1409 S23: 0.1982 REMARK 3 S31: 0.0007 S32: -0.2344 S33: 0.0353 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 532 THROUGH 541 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6892 -6.2529 -20.5561 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2361 REMARK 3 T33: 0.2933 T12: -0.0401 REMARK 3 T13: -0.0901 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 2.9493 L22: 6.4842 REMARK 3 L33: 4.8309 L12: -4.1771 REMARK 3 L13: 1.1895 L23: -1.9155 REMARK 3 S TENSOR REMARK 3 S11: -0.2231 S12: 0.0466 S13: 0.5278 REMARK 3 S21: 0.3543 S22: -0.2973 S23: -1.0927 REMARK 3 S31: -0.3490 S32: 0.7963 S33: 0.4950 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 542 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4791 18.9629 -28.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.1583 REMARK 3 T33: 0.1402 T12: 0.0246 REMARK 3 T13: -0.0292 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 4.0645 L22: 8.7183 REMARK 3 L33: 2.2676 L12: -2.6732 REMARK 3 L13: 0.1738 L23: -2.4342 REMARK 3 S TENSOR REMARK 3 S11: -0.1115 S12: -0.1183 S13: 0.2964 REMARK 3 S21: 0.6088 S22: 0.0629 S23: 0.2487 REMARK 3 S31: -0.4192 S32: -0.2410 S33: 0.0319 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 423 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9368 23.7827 -21.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.1436 REMARK 3 T33: 0.1862 T12: -0.0177 REMARK 3 T13: -0.0316 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 9.7442 L22: 8.6501 REMARK 3 L33: 2.3944 L12: -8.4869 REMARK 3 L13: 2.5592 L23: -2.2626 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: 0.1878 S13: 0.2250 REMARK 3 S21: 0.2878 S22: -0.1388 S23: -0.1601 REMARK 3 S31: 0.3040 S32: 0.1242 S33: 0.1577 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300031695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 28.70 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 22.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7CRG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 25% (V/V) REMARK 280 POLYETHYLENE GLYCOL 300, VAPOR DIFFUSION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.18733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.37467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.18733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 136.37467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.18733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 136.37467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.18733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 136.37467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 552 REMARK 465 LEU B 421 REMARK 465 LEU C 421 REMARK 465 GLU C 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 507 79.48 -151.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YVD A 421 552 UNP P02545 LMNA_HUMAN 421 552 DBREF 7YVD B 421 552 UNP P02545 LMNA_HUMAN 421 552 DBREF 7YVD C 421 552 UNP P02545 LMNA_HUMAN 421 552 SEQRES 1 A 132 LEU GLU SER THR GLU SER ARG SER SER PHE SER GLN HIS SEQRES 2 A 132 ALA ARG THR SER GLY ARG VAL ALA VAL GLU GLU VAL ASP SEQRES 3 A 132 GLU GLU GLY LYS PHE VAL ARG LEU ARG ASN LYS SER ASN SEQRES 4 A 132 GLU ASP GLN SER MSE GLY ASN TRP GLN ILE LYS ARG GLN SEQRES 5 A 132 ASN GLY ASP ASP PRO LEU LEU THR TYR ARG PHE PRO PRO SEQRES 6 A 132 LYS PHE THR LEU LYS ALA GLY GLN VAL VAL THR ILE TRP SEQRES 7 A 132 ALA ALA GLY ALA GLY ALA THR HIS SER PRO PRO THR ASP SEQRES 8 A 132 LEU VAL TRP LYS ALA GLN ASN THR TRP GLY CYS GLY ASN SEQRES 9 A 132 SER LEU ARG THR ALA LEU ILE ASN SER THR GLY GLU GLU SEQRES 10 A 132 VAL ALA MSE ARG LYS LEU VAL ARG SER VAL THR VAL VAL SEQRES 11 A 132 GLU ASP SEQRES 1 B 132 LEU GLU SER THR GLU SER ARG SER SER PHE SER GLN HIS SEQRES 2 B 132 ALA ARG THR SER GLY ARG VAL ALA VAL GLU GLU VAL ASP SEQRES 3 B 132 GLU GLU GLY LYS PHE VAL ARG LEU ARG ASN LYS SER ASN SEQRES 4 B 132 GLU ASP GLN SER MSE GLY ASN TRP GLN ILE LYS ARG GLN SEQRES 5 B 132 ASN GLY ASP ASP PRO LEU LEU THR TYR ARG PHE PRO PRO SEQRES 6 B 132 LYS PHE THR LEU LYS ALA GLY GLN VAL VAL THR ILE TRP SEQRES 7 B 132 ALA ALA GLY ALA GLY ALA THR HIS SER PRO PRO THR ASP SEQRES 8 B 132 LEU VAL TRP LYS ALA GLN ASN THR TRP GLY CYS GLY ASN SEQRES 9 B 132 SER LEU ARG THR ALA LEU ILE ASN SER THR GLY GLU GLU SEQRES 10 B 132 VAL ALA MSE ARG LYS LEU VAL ARG SER VAL THR VAL VAL SEQRES 11 B 132 GLU ASP SEQRES 1 C 132 LEU GLU SER THR GLU SER ARG SER SER PHE SER GLN HIS SEQRES 2 C 132 ALA ARG THR SER GLY ARG VAL ALA VAL GLU GLU VAL ASP SEQRES 3 C 132 GLU GLU GLY LYS PHE VAL ARG LEU ARG ASN LYS SER ASN SEQRES 4 C 132 GLU ASP GLN SER MSE GLY ASN TRP GLN ILE LYS ARG GLN SEQRES 5 C 132 ASN GLY ASP ASP PRO LEU LEU THR TYR ARG PHE PRO PRO SEQRES 6 C 132 LYS PHE THR LEU LYS ALA GLY GLN VAL VAL THR ILE TRP SEQRES 7 C 132 ALA ALA GLY ALA GLY ALA THR HIS SER PRO PRO THR ASP SEQRES 8 C 132 LEU VAL TRP LYS ALA GLN ASN THR TRP GLY CYS GLY ASN SEQRES 9 C 132 SER LEU ARG THR ALA LEU ILE ASN SER THR GLY GLU GLU SEQRES 10 C 132 VAL ALA MSE ARG LYS LEU VAL ARG SER VAL THR VAL VAL SEQRES 11 C 132 GLU ASP MODRES 7YVD MSE A 464 MET MODIFIED RESIDUE MODRES 7YVD MSE A 540 MET MODIFIED RESIDUE MODRES 7YVD MSE B 464 MET MODIFIED RESIDUE MODRES 7YVD MSE B 540 MET MODIFIED RESIDUE MODRES 7YVD MSE C 464 MET MODIFIED RESIDUE MODRES 7YVD MSE C 540 MET MODIFIED RESIDUE HET MSE A 464 8 HET MSE A 540 8 HET MSE B 464 8 HET MSE B 540 8 HET MSE C 464 8 HET MSE C 540 8 HET SEC A 601 7 HET SEC B 601 7 HET SEC C 601 7 HETNAM MSE SELENOMETHIONINE HETNAM SEC SELENOCYSTEINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 SEC 3(C3 H7 N O2 SE) FORMUL 7 HOH *394(H2 O) HELIX 1 AA1 GLY A 501 GLY A 503 5 3 HELIX 2 AA2 GLY B 501 GLY B 503 5 3 HELIX 3 AA3 GLY C 501 GLY C 503 5 3 SHEET 1 AA110 LEU A 479 ARG A 482 0 SHEET 2 AA110 GLN A 468 ASN A 473 -1 N ARG A 471 O LEU A 479 SHEET 3 AA110 SER A 525 ILE A 531 -1 O ILE A 531 N GLN A 468 SHEET 4 AA110 GLU A 537 VAL A 549 -1 O ALA A 539 N LEU A 530 SHEET 5 AA110 THR A 424 THR A 436 -1 N SER A 429 O SER A 546 SHEET 6 AA110 THR C 424 THR C 436 -1 O SER C 428 N GLN A 432 SHEET 7 AA110 GLU C 537 VAL C 549 -1 O THR C 548 N ARG C 427 SHEET 8 AA110 SER C 525 ILE C 531 -1 N LEU C 530 O ALA C 539 SHEET 9 AA110 GLN C 468 ASN C 473 -1 N GLN C 468 O ILE C 531 SHEET 10 AA110 LEU C 479 ARG C 482 -1 O LEU C 479 N ARG C 471 SHEET 1 AA2 4 VAL A 440 VAL A 445 0 SHEET 2 AA2 4 PHE A 451 ASN A 456 -1 O ARG A 453 N GLU A 444 SHEET 3 AA2 4 VAL A 494 ALA A 499 -1 O ILE A 497 N VAL A 452 SHEET 4 AA2 4 ASP A 511 TRP A 514 1 O TRP A 514 N TRP A 498 SHEET 1 AA3 2 GLN A 462 SER A 463 0 SHEET 2 AA3 2 THR A 488 LEU A 489 -1 O LEU A 489 N GLN A 462 SHEET 1 AA4 5 SER B 426 THR B 436 0 SHEET 2 AA4 5 GLU B 537 VAL B 549 -1 O SER B 546 N SER B 429 SHEET 3 AA4 5 SER B 525 ILE B 531 -1 N LEU B 530 O ALA B 539 SHEET 4 AA4 5 GLN B 468 GLN B 472 -1 N GLN B 468 O ILE B 531 SHEET 5 AA4 5 LEU B 479 ARG B 482 -1 O LEU B 479 N ARG B 471 SHEET 1 AA5 4 VAL B 440 VAL B 445 0 SHEET 2 AA5 4 PHE B 451 ASN B 456 -1 O ARG B 455 N ALA B 441 SHEET 3 AA5 4 VAL B 494 ALA B 499 -1 O ILE B 497 N VAL B 452 SHEET 4 AA5 4 ASP B 511 TRP B 514 1 O TRP B 514 N TRP B 498 SHEET 1 AA6 2 GLN B 462 SER B 463 0 SHEET 2 AA6 2 THR B 488 LEU B 489 -1 O LEU B 489 N GLN B 462 SHEET 1 AA7 4 VAL C 440 VAL C 445 0 SHEET 2 AA7 4 PHE C 451 ASN C 456 -1 O ARG C 455 N ALA C 441 SHEET 3 AA7 4 VAL C 494 ALA C 499 -1 O ILE C 497 N VAL C 452 SHEET 4 AA7 4 ASP C 511 TRP C 514 1 O TRP C 514 N TRP C 498 SHEET 1 AA8 2 GLN C 462 SER C 463 0 SHEET 2 AA8 2 THR C 488 LEU C 489 -1 O LEU C 489 N GLN C 462 LINK C SER A 463 N MSE A 464 1555 1555 1.33 LINK C MSE A 464 N GLY A 465 1555 1555 1.33 LINK C ALA A 539 N MSE A 540 1555 1555 1.33 LINK C MSE A 540 N ARG A 541 1555 1555 1.33 LINK C ASER B 463 N MSE B 464 1555 1555 1.33 LINK C BSER B 463 N MSE B 464 1555 1555 1.33 LINK C MSE B 464 N GLY B 465 1555 1555 1.33 LINK C ALA B 539 N MSE B 540 1555 1555 1.33 LINK C MSE B 540 N ARG B 541 1555 1555 1.33 LINK C SER C 463 N MSE C 464 1555 1555 1.33 LINK C MSE C 464 N GLY C 465 1555 1555 1.33 LINK C ALA C 539 N MSE C 540 1555 1555 1.33 LINK C MSE C 540 N ARG C 541 1555 1555 1.33 CISPEP 1 PRO A 508 PRO A 509 0 4.28 CISPEP 2 PRO B 508 PRO B 509 0 2.62 CISPEP 3 PRO C 508 PRO C 509 0 2.61 CRYST1 91.974 91.974 204.562 90.00 90.00 120.00 P 64 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010873 0.006277 0.000000 0.00000 SCALE2 0.000000 0.012555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004888 0.00000