HEADER PLANT PROTEIN 13-FEB-22 7YWF TITLE MONOCOT CHIMERIC JACALIN JAC1 FROM ORYZA SATIVA: DIRIGENT DOMAIN WITH TITLE 2 BOUND GALACTOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIRIGENT PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: JAC1, LOC_OS12G14440, OS12G0247700, OSNPB_120247700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MONOCOT CHIMERIC JACALIN, DIRIGENT PROTEIN, LECTIN, PATHOGEN KEYWDS 2 RESISTANCE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.HUWA,T.CLASSEN,O.H.WEIERGRAEBER REVDAT 3 31-JAN-24 7YWF 1 REMARK REVDAT 2 14-SEP-22 7YWF 1 JRNL REVDAT 1 04-MAY-22 7YWF 0 JRNL AUTH N.HUWA,O.H.WEIERGRABER,A.V.FEJZAGIC,C.KIRSCH,U.SCHAFFRATH, JRNL AUTH 2 T.CLASSEN JRNL TITL THE CRYSTAL STRUCTURE OF THE DEFENSE CONFERRING RICE PROTEIN JRNL TITL 2 OS JAC1 REVEALS A CARBOHYDRATE BINDING SITE ON THE JRNL TITL 3 DIRIGENT-LIKE DOMAIN. JRNL REF BIOMOLECULES V. 12 2022 JRNL REFN ESSN 2218-273X JRNL PMID 36009020 JRNL DOI 10.3390/BIOM12081126 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9000 - 4.9700 1.00 1861 140 0.2016 0.2341 REMARK 3 2 4.9700 - 3.9500 1.00 1846 139 0.1867 0.2065 REMARK 3 3 3.9500 - 3.4500 1.00 1835 137 0.2381 0.3217 REMARK 3 4 3.4500 - 3.1300 1.00 1870 141 0.2709 0.2917 REMARK 3 5 3.1300 - 2.9100 1.00 1828 138 0.3678 0.4129 REMARK 3 6 2.9100 - 2.7400 0.99 1846 139 0.4830 0.5038 REMARK 3 7 2.7400 - 2.6000 1.00 1852 140 0.6251 0.6216 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.625 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3267 REMARK 3 ANGLE : 0.567 4463 REMARK 3 CHIRALITY : 0.044 535 REMARK 3 PLANARITY : 0.003 560 REMARK 3 DIHEDRAL : 11.289 1075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9529 69.4719 23.3845 REMARK 3 T TENSOR REMARK 3 T11: 0.7109 T22: 0.6209 REMARK 3 T33: 0.8665 T12: -0.0966 REMARK 3 T13: 0.0445 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.0821 L22: 7.8269 REMARK 3 L33: 2.6326 L12: -0.4459 REMARK 3 L13: -0.5900 L23: 0.2048 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.2408 S13: 0.6468 REMARK 3 S21: 0.3167 S22: -0.2974 S23: 0.7458 REMARK 3 S31: -0.3678 S32: -0.2141 S33: 0.2911 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.3940 77.2136 5.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.9683 T22: 1.4284 REMARK 3 T33: 1.8721 T12: -0.2612 REMARK 3 T13: -0.0293 T23: 0.2309 REMARK 3 L TENSOR REMARK 3 L11: 3.2172 L22: 9.3104 REMARK 3 L33: 6.0136 L12: 5.4359 REMARK 3 L13: 0.9303 L23: 2.2093 REMARK 3 S TENSOR REMARK 3 S11: -2.4003 S12: 1.7995 S13: 0.1383 REMARK 3 S21: -0.5760 S22: -0.3069 S23: -1.1094 REMARK 3 S31: -0.0037 S32: 0.0990 S33: 2.4693 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0852 52.5796 8.0218 REMARK 3 T TENSOR REMARK 3 T11: 0.7355 T22: 0.7528 REMARK 3 T33: 0.9026 T12: -0.0482 REMARK 3 T13: -0.0134 T23: -0.0902 REMARK 3 L TENSOR REMARK 3 L11: 3.8546 L22: 5.2702 REMARK 3 L33: 2.1007 L12: 0.7930 REMARK 3 L13: 0.3120 L23: -0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: 0.4343 S13: -0.7997 REMARK 3 S21: -0.5160 S22: 0.1215 S23: 0.1329 REMARK 3 S31: 0.2132 S32: 0.0590 S33: -0.0186 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9248 62.0708 17.3568 REMARK 3 T TENSOR REMARK 3 T11: 0.7358 T22: 0.9192 REMARK 3 T33: 1.3072 T12: -0.0162 REMARK 3 T13: 0.0915 T23: 0.0991 REMARK 3 L TENSOR REMARK 3 L11: 4.8391 L22: 6.9338 REMARK 3 L33: 2.4430 L12: 1.6431 REMARK 3 L13: -0.5946 L23: -1.7168 REMARK 3 S TENSOR REMARK 3 S11: -0.1196 S12: -0.1726 S13: -0.2282 REMARK 3 S21: 0.0910 S22: -0.0692 S23: -0.8895 REMARK 3 S31: -0.0463 S32: 0.3112 S33: 0.1711 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.730 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.78 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 6OOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM DIHYDROGEN PHOSPHATE, TRIS REMARK 280 -HCL, METHYLPENTANEDIOL, DITHIOTHREITOL, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.02500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.62511 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.24000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 79.02500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 45.62511 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.24000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 79.02500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 45.62511 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.24000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.25021 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.48000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 91.25021 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.48000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 91.25021 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.48000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 ILE A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 CYS A 12 REMARK 465 GLY A 13 REMARK 465 MET A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 GLN A 17 REMARK 465 GLY A 18 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 SER A 159 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 LEU B 3 REMARK 465 GLU B 4 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 SER B 159 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 HIS C 1 REMARK 465 MET C 2 REMARK 465 LEU C 3 REMARK 465 GLU C 4 REMARK 465 SER C 5 REMARK 465 LYS C 6 REMARK 465 LEU C 7 REMARK 465 GLN C 8 REMARK 465 ILE C 9 REMARK 465 THR C 10 REMARK 465 PRO C 11 REMARK 465 CYS C 12 REMARK 465 GLY C 13 REMARK 465 MET C 14 REMARK 465 LYS C 157 REMARK 465 GLY C 158 REMARK 465 SER C 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 19 CG OD1 ND2 REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 ILE A 21 CG1 CG2 CD1 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 70 CD CE NZ REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ASP A 95 CG OD1 OD2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 97 NE CZ NH1 NH2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 GLN A 140 CG CD OE1 NE2 REMARK 470 LEU A 155 CG CD1 CD2 REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 MET B 14 CG SD CE REMARK 470 LEU B 15 CG CD1 CD2 REMARK 470 GLN B 17 CG CD OE1 NE2 REMARK 470 GLN B 20 CG CD OE1 NE2 REMARK 470 ILE B 21 CG1 CG2 CD1 REMARK 470 ASN B 22 CG OD1 ND2 REMARK 470 PHE B 23 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 ASP B 63 CG OD1 OD2 REMARK 470 ASP B 68 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ASP B 95 CG OD1 OD2 REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 LYS B 139 CD CE NZ REMARK 470 LEU B 155 CG CD1 CD2 REMARK 470 LEU B 156 CG CD1 CD2 REMARK 470 GLN C 17 CG CD OE1 NE2 REMARK 470 LYS C 25 CD CE NZ REMARK 470 GLU C 36 CD OE1 OE2 REMARK 470 LYS C 47 CG CD CE NZ REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 SER C 67 OG REMARK 470 LYS C 70 CD CE NZ REMARK 470 GLU C 96 CG CD OE1 OE2 REMARK 470 ARG C 97 CD NE CZ NH1 NH2 REMARK 470 LYS C 99 CE NZ REMARK 470 GLU C 112 CG CD OE1 OE2 REMARK 470 GLN C 123 CD OE1 NE2 REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 GLU C 137 CG CD OE1 OE2 REMARK 470 LYS C 139 CE NZ REMARK 470 GLN C 140 CG CD OE1 NE2 REMARK 470 LEU C 147 CG CD1 CD2 REMARK 470 LEU C 155 CG CD1 CD2 REMARK 470 LEU C 156 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 109 142.75 70.46 REMARK 500 HIS A 150 73.04 -112.41 REMARK 500 CYS B 12 -163.57 -166.15 REMARK 500 SER B 88 102.74 -166.83 REMARK 500 ILE B 109 139.81 70.05 REMARK 500 SER C 67 -142.25 53.04 REMARK 500 ASP C 68 56.49 -105.36 REMARK 500 ILE C 109 145.55 67.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7R5Z RELATED DB: PDB REMARK 900 RELATED ID: 7YWE RELATED DB: PDB REMARK 900 RELATED ID: 7YWG RELATED DB: PDB REMARK 900 RELATED ID: 7YWW RELATED DB: PDB DBREF 7YWF A 5 159 UNP Q306J3 Q306J3_ORYSJ 5 159 DBREF 7YWF B 5 159 UNP Q306J3 Q306J3_ORYSJ 5 159 DBREF 7YWF C 5 159 UNP Q306J3 Q306J3_ORYSJ 5 159 SEQADV 7YWF GLY A -1 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF SER A 0 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF HIS A 1 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF MET A 2 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF LEU A 3 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF GLU A 4 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF ILE A 49 UNP Q306J3 THR 49 ENGINEERED MUTATION SEQADV 7YWF GLY B -1 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF SER B 0 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF HIS B 1 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF MET B 2 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF LEU B 3 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF GLU B 4 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF ILE B 49 UNP Q306J3 THR 49 ENGINEERED MUTATION SEQADV 7YWF GLY C -1 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF SER C 0 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF HIS C 1 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF MET C 2 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF LEU C 3 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF GLU C 4 UNP Q306J3 EXPRESSION TAG SEQADV 7YWF ILE C 49 UNP Q306J3 THR 49 ENGINEERED MUTATION SEQRES 1 A 161 GLY SER HIS MET LEU GLU SER LYS LEU GLN ILE THR PRO SEQRES 2 A 161 CYS GLY MET LEU VAL GLN GLY ASN GLN ILE ASN PHE THR SEQRES 3 A 161 LYS LEU TYR LEU HIS HIS THR PRO ALA GLY PRO GLU GLN SEQRES 4 A 161 ASN GLN SER ALA VAL THR SER ASN ASP LYS LYS ILE GLY SEQRES 5 A 161 LEU GLY CYS ILE VAL VAL ASN ASN TRP SER VAL TYR ASP SEQRES 6 A 161 GLY ILE GLY SER ASP ALA LYS LEU VAL ALA TYR ALA LYS SEQRES 7 A 161 GLY LEU HIS VAL PHE ALA GLY ALA TRP HIS ASN SER PHE SEQRES 8 A 161 SER LEU VAL PHE GLU ASP GLU ARG LEU LYS GLY SER THR SEQRES 9 A 161 LEU GLN VAL MET GLY LEU ILE VAL GLU GLU GLY ASP TRP SEQRES 10 A 161 ALA ILE VAL GLY GLY THR GLY GLN PHE ALA MET ALA THR SEQRES 11 A 161 GLY VAL ILE LEU LYS LYS MET GLN GLU GLN LYS GLN TYR SEQRES 12 A 161 GLY ASN ILE ILE GLU LEU THR ILE HIS GLY PHE CYS PRO SEQRES 13 A 161 LEU LEU LYS GLY SER SEQRES 1 B 161 GLY SER HIS MET LEU GLU SER LYS LEU GLN ILE THR PRO SEQRES 2 B 161 CYS GLY MET LEU VAL GLN GLY ASN GLN ILE ASN PHE THR SEQRES 3 B 161 LYS LEU TYR LEU HIS HIS THR PRO ALA GLY PRO GLU GLN SEQRES 4 B 161 ASN GLN SER ALA VAL THR SER ASN ASP LYS LYS ILE GLY SEQRES 5 B 161 LEU GLY CYS ILE VAL VAL ASN ASN TRP SER VAL TYR ASP SEQRES 6 B 161 GLY ILE GLY SER ASP ALA LYS LEU VAL ALA TYR ALA LYS SEQRES 7 B 161 GLY LEU HIS VAL PHE ALA GLY ALA TRP HIS ASN SER PHE SEQRES 8 B 161 SER LEU VAL PHE GLU ASP GLU ARG LEU LYS GLY SER THR SEQRES 9 B 161 LEU GLN VAL MET GLY LEU ILE VAL GLU GLU GLY ASP TRP SEQRES 10 B 161 ALA ILE VAL GLY GLY THR GLY GLN PHE ALA MET ALA THR SEQRES 11 B 161 GLY VAL ILE LEU LYS LYS MET GLN GLU GLN LYS GLN TYR SEQRES 12 B 161 GLY ASN ILE ILE GLU LEU THR ILE HIS GLY PHE CYS PRO SEQRES 13 B 161 LEU LEU LYS GLY SER SEQRES 1 C 161 GLY SER HIS MET LEU GLU SER LYS LEU GLN ILE THR PRO SEQRES 2 C 161 CYS GLY MET LEU VAL GLN GLY ASN GLN ILE ASN PHE THR SEQRES 3 C 161 LYS LEU TYR LEU HIS HIS THR PRO ALA GLY PRO GLU GLN SEQRES 4 C 161 ASN GLN SER ALA VAL THR SER ASN ASP LYS LYS ILE GLY SEQRES 5 C 161 LEU GLY CYS ILE VAL VAL ASN ASN TRP SER VAL TYR ASP SEQRES 6 C 161 GLY ILE GLY SER ASP ALA LYS LEU VAL ALA TYR ALA LYS SEQRES 7 C 161 GLY LEU HIS VAL PHE ALA GLY ALA TRP HIS ASN SER PHE SEQRES 8 C 161 SER LEU VAL PHE GLU ASP GLU ARG LEU LYS GLY SER THR SEQRES 9 C 161 LEU GLN VAL MET GLY LEU ILE VAL GLU GLU GLY ASP TRP SEQRES 10 C 161 ALA ILE VAL GLY GLY THR GLY GLN PHE ALA MET ALA THR SEQRES 11 C 161 GLY VAL ILE LEU LYS LYS MET GLN GLU GLN LYS GLN TYR SEQRES 12 C 161 GLY ASN ILE ILE GLU LEU THR ILE HIS GLY PHE CYS PRO SEQRES 13 C 161 LEU LEU LYS GLY SER HET GAL D 1 12 HET GAL D 2 11 HET GAL E 1 12 HET GAL E 2 11 HET GAL F 1 12 HET GAL F 2 11 HET TRS A 201 8 HET PO4 B 201 5 HET DTU B 202 8 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PO4 PHOSPHATE ION HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN TRS TRIS BUFFER FORMUL 4 GAL 6(C6 H12 O6) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 PO4 O4 P 3- FORMUL 9 DTU C4 H10 O2 S2 FORMUL 10 HOH *5(H2 O) HELIX 1 AA1 GLY A 122 ALA A 125 5 4 HELIX 2 AA2 GLY B 122 ALA B 125 5 4 HELIX 3 AA3 GLY C 122 ALA C 125 5 4 SHEET 1 AA110 GLN A 39 ALA A 41 0 SHEET 2 AA110 ILE A 54 TYR A 62 -1 O VAL A 56 N SER A 40 SHEET 3 AA110 LEU A 71 PHE A 81 -1 O ALA A 75 N TRP A 59 SHEET 4 AA110 TRP A 85 PHE A 93 -1 O SER A 90 N LYS A 76 SHEET 5 AA110 THR A 102 LEU A 108 -1 O LEU A 103 N LEU A 91 SHEET 6 AA110 ASP A 114 THR A 121 -1 O GLY A 119 N GLN A 104 SHEET 7 AA110 THR A 128 GLN A 138 -1 O GLY A 129 N ILE A 117 SHEET 8 AA110 ASN A 143 PHE A 152 -1 O GLU A 146 N LYS A 134 SHEET 9 AA110 LEU A 26 HIS A 30 -1 N LEU A 26 O LEU A 147 SHEET 10 AA110 ILE A 54 TYR A 62 -1 O SER A 60 N HIS A 29 SHEET 1 AA219 LYS B 6 ILE B 21 0 SHEET 2 AA219 LEU B 26 HIS B 30 0 SHEET 3 AA219 GLN B 39 ALA B 41 0 SHEET 4 AA219 ILE B 54 TYR B 62 -1 O VAL B 56 N SER B 40 SHEET 5 AA219 LEU B 71 PHE B 81 -1 O ALA B 75 N TRP B 59 SHEET 6 AA219 TRP B 85 PHE B 93 -1 O SER B 90 N LYS B 76 SHEET 7 AA219 THR B 102 LEU B 108 -1 O LEU B 103 N LEU B 91 SHEET 8 AA219 ASP B 114 THR B 121 -1 O ALA B 116 N MET B 106 SHEET 9 AA219 THR B 128 GLN B 138 -1 O GLY B 129 N ILE B 117 SHEET 10 AA219 ASN B 143 LEU B 156 -1 O GLU B 146 N LYS B 134 SHEET 11 AA219 VAL C 16 HIS C 30 -1 O GLN C 20 N THR B 10 SHEET 12 AA219 GLN C 39 THR C 43 0 SHEET 13 AA219 ILE C 54 TYR C 62 -1 O ILE C 54 N VAL C 42 SHEET 14 AA219 LEU C 71 PHE C 81 -1 O ALA C 75 N TRP C 59 SHEET 15 AA219 TRP C 85 PHE C 93 -1 O VAL C 92 N TYR C 74 SHEET 16 AA219 THR C 102 LEU C 108 -1 O GLY C 107 N ASN C 87 SHEET 17 AA219 ASP C 114 THR C 121 -1 O ALA C 116 N MET C 106 SHEET 18 AA219 THR C 128 GLN C 138 -1 O GLY C 129 N ILE C 117 SHEET 19 AA219 ASN C 143 PRO C 154 -1 O GLU C 146 N LYS C 134 LINK O4 GAL D 1 C1 GAL D 2 1555 1555 1.46 LINK O4 GAL E 1 C1 GAL E 2 1555 1555 1.47 LINK O4 GAL F 1 C1 GAL F 2 1555 1555 1.45 CRYST1 158.050 158.050 48.720 90.00 90.00 120.00 H 3 27 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006327 0.003653 0.000000 0.00000 SCALE2 0.000000 0.007306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020525 0.00000