HEADER HYDROLASE 14-FEB-22 7YWP TITLE CLOSED CONFORMATION OF OLIGOPEPTIDASE B FROM SERRATIA PROTEOMACULANS TITLE 2 WITH COVALENTLY BOUND TCK COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOPEPTIDASE B; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.83; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA PROTEAMACULANS; SOURCE 3 ORGANISM_TAXID: 28151; SOURCE 4 GENE: OPDB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.PETRENKO,K.M.BOYKO,A.Y.NIKOLAEVA,A.V.VLASKINA,A.G.MIKHAILOVA, AUTHOR 2 V.I.TIMOFEEV,T.V.RAKITINA REVDAT 3 07-FEB-24 7YWP 1 REMARK REVDAT 2 01-MAR-23 7YWP 1 JRNL REVDAT 1 22-FEB-23 7YWP 0 JRNL AUTH D.E.PETRENKO,D.M.KARLINSKY,V.D.GORDEEVA,G.P.ARAPIDI, JRNL AUTH 2 E.V.BRITIKOVA,V.V.BRITIKOV,A.Y.NIKOLAEVA,K.M.BOYKO, JRNL AUTH 3 V.I.TIMOFEEV,I.P.KURANOVA,A.G.MIKHAILOVA,E.V.BOCHAROV, JRNL AUTH 4 T.V.RAKITINA JRNL TITL CRYSTAL STRUCTURE OF INHIBITOR-BOUND BACTERIAL JRNL TITL 2 OLIGOPEPTIDASE B IN THE CLOSED STATE: SIMILARITY AND JRNL TITL 3 DIFFERENCE BETWEEN PROTOZOAN AND BACTERIAL ENZYMES. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 36768612 JRNL DOI 10.3390/IJMS24032286 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 35605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.296 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.226 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5697 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5125 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7744 ; 1.566 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11790 ; 1.257 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 675 ; 7.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 351 ;33.703 ;22.422 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 922 ;16.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;18.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6555 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1404 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7YWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37524 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.140 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6952 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.27 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7OB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LITHIUM SULFATE, 100 MM BIS REMARK 280 -TRIS PH 5.5, 23% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.76450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.76450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 532 C TCK A 701 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1120 O HOH A 1188 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 658 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 3 105.34 72.95 REMARK 500 ARG A 33 76.29 91.10 REMARK 500 THR A 34 24.54 -141.94 REMARK 500 SER A 108 -42.40 -140.22 REMARK 500 GLN A 123 -27.39 88.88 REMARK 500 SER A 149 5.58 114.90 REMARK 500 TYR A 199 -9.25 -141.74 REMARK 500 PHE A 264 -81.82 -86.29 REMARK 500 PHE A 293 150.36 72.96 REMARK 500 ASP A 302 118.39 -39.45 REMARK 500 ARG A 325 -61.91 -27.61 REMARK 500 GLN A 346 -72.81 -87.38 REMARK 500 THR A 359 58.61 -154.67 REMARK 500 ASP A 396 -4.01 76.37 REMARK 500 TYR A 452 -81.68 -129.53 REMARK 500 LEU A 498 -129.12 52.20 REMARK 500 SER A 532 -113.59 65.93 REMARK 500 VAL A 556 55.48 29.54 REMARK 500 ASP A 560 50.46 -91.01 REMARK 500 LEU A 572 -7.48 85.34 REMARK 500 GLU A 579 -68.57 -108.33 REMARK 500 SER A 596 106.99 -50.28 REMARK 500 ALA A 603 89.88 -68.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: N-[(1S)-5-AMINO-1-(CHLOROACETYL)PENTYL]-4- REMARK 630 METHYLBENZENESULFONAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 TCK A 701 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: TSU LYS 0QE REMARK 630 DETAILS: NULL DBREF 7YWP A 2 677 UNP B3VI58 B3VI58_9GAMM 2 677 SEQRES 1 A 676 MET THR PRO PRO LYS ALA GLU LYS ARG PRO TYR PRO ILE SEQRES 2 A 676 THR THR HIS GLY ASP THR ARG VAL ASP ASP TYR TYR TRP SEQRES 3 A 676 LEU ARG ASP ASP GLU ARG THR ASP PRO GLN VAL LEU ASP SEQRES 4 A 676 TYR LEU GLN ALA GLU ASN ALA PHE THR ASP ALA ALA LEU SEQRES 5 A 676 LYS PRO GLN GLN ALA LEU ARG GLU THR LEU TYR GLU GLU SEQRES 6 A 676 MET VAL ALA ARG ILE PRO GLN GLN GLU HIS SER VAL PRO SEQRES 7 A 676 TYR VAL ARG HIS GLY TYR ARG TYR GLN THR ARG PHE GLU SEQRES 8 A 676 PRO GLY ASN GLU TYR ALA ILE TYR VAL ARG GLN PRO GLN SEQRES 9 A 676 ALA GLU SER GLU HIS TRP ASP THR LEU ILE ASP GLY ASN SEQRES 10 A 676 GLN ARG ALA GLU GLN ARG GLU PHE TYR THR LEU GLY GLY SEQRES 11 A 676 LEU GLU VAL SER PRO ASP ASN GLN LYS LEU ALA VAL ALA SEQRES 12 A 676 GLU ASP PHE LEU SER ARG ARG GLN TYR ASP ILE ARG PHE SEQRES 13 A 676 LYS ASN LEU SER ASP ASP SER TRP THR ASP GLU VAL LEU SEQRES 14 A 676 GLU ASN THR SER GLY SER PHE GLU TRP ALA ASN ASP SER SEQRES 15 A 676 ALA THR VAL TYR TYR VAL ARG LYS HIS ALA LYS THR LEU SEQRES 16 A 676 LEU PRO TYR GLN VAL TYR ARG HIS VAL VAL GLY THR ASP SEQRES 17 A 676 PRO GLN LEU ASP GLU LEU ILE TYR GLU GLU GLN ASP ASP SEQRES 18 A 676 THR PHE TYR VAL GLY LEU GLU LYS THR THR SER ASP ARG SEQRES 19 A 676 PHE ILE LEU ILE HIS LEU SER SER THR THR THR SER GLU SEQRES 20 A 676 ILE LEU LEU LEU ASP ALA ASP ARG ALA ASP SER THR PRO SEQRES 21 A 676 GLN MET PHE VAL PRO ARG ARG LYS ASP HIS GLU TYR GLY SEQRES 22 A 676 ILE ASP HIS TYR HIS GLN HIS PHE TYR ILE ARG SER ASN SEQRES 23 A 676 LYS ASP GLY LYS ASN PHE GLY LEU TYR GLN SER GLU GLN SEQRES 24 A 676 ALA ASP GLU ALA GLN TRP GLN THR LEU ILE ALA PRO ARG SEQRES 25 A 676 ILE GLU VAL MET LEU GLU GLY PHE SER LEU PHE ARG ASP SEQRES 26 A 676 TRP LEU VAL VAL GLU GLU ARG SER GLU GLY LEU THR GLN SEQRES 27 A 676 LEU ARG GLN ILE HIS TRP GLN SER GLY GLU VAL LYS ARG SEQRES 28 A 676 ILE ALA PHE ASP ASP PRO THR TYR THR THR TRP LEU ALA SEQRES 29 A 676 TYR ASN PRO GLU PRO GLU THR GLU LEU LEU ARG TYR GLY SEQRES 30 A 676 TYR SER SER MET THR THR PRO THR THR LEU TYR GLU LEU SEQRES 31 A 676 ASN LEU ASP SER ASP GLU ARG VAL MET LEU LYS GLN GLN SEQRES 32 A 676 GLU VAL LYS ASN PHE THR PRO GLU ASN TYR ARG SER GLU SEQRES 33 A 676 ARG VAL TRP VAL LYS ALA ARG ASP GLY VAL GLU VAL PRO SEQRES 34 A 676 VAL SER LEU VAL TYR ARG HIS ASP SER PHE ALA ARG GLY SEQRES 35 A 676 THR ASN PRO LEU MET VAL TYR GLY TYR GLY SER TYR GLY SEQRES 36 A 676 SER SER MET ASP PRO ALA PHE SER ALA SER ARG LEU SER SEQRES 37 A 676 LEU LEU ASP ARG GLY PHE VAL PHE VAL LEU ALA HIS ILE SEQRES 38 A 676 ARG GLY GLY GLY GLU LEU GLY GLN LEU TRP TYR GLU ASP SEQRES 39 A 676 GLY LYS LEU PHE LYS LYS GLN ASN THR PHE ASN ASP PHE SEQRES 40 A 676 ILE ASP VAL THR GLU ALA LEU ILE ALA GLN GLY TYR GLY SEQRES 41 A 676 ASP ALA LYS ARG VAL PHE ALA MET GLY GLY SER ALA GLY SEQRES 42 A 676 GLY LEU LEU MET GLY ALA VAL ILE ASN GLN ALA PRO GLU SEQRES 43 A 676 LEU PHE ASN GLY ILE VAL ALA GLN VAL PRO PHE VAL ASP SEQRES 44 A 676 VAL VAL THR THR MET LEU ASP GLU SER ILE PRO LEU THR SEQRES 45 A 676 THR GLY GLU TYR ASP GLU TRP GLY ASN PRO ASN GLN GLN SEQRES 46 A 676 ALA TYR TYR ASP TYR ILE LEU GLN TYR SER PRO TYR ASP SEQRES 47 A 676 GLN VAL LYS ALA GLN ASP TYR PRO HIS MET LEU VAL THR SEQRES 48 A 676 THR GLY LEU HIS ASP SER GLN VAL GLN TYR TRP GLU PRO SEQRES 49 A 676 ALA LYS TRP VAL ALA LYS LEU ARG GLU LEU LYS THR ASP SEQRES 50 A 676 ASP ARG GLN LEU LEU LEU TYR THR ASP MET ASP SER GLY SEQRES 51 A 676 HIS GLY GLY LYS SER GLY ARG PHE LYS ALA TYR GLU ASP SEQRES 52 A 676 ILE ALA LEU GLU TYR ALA PHE ILE LEU ALA LEU ALA GLU HET TCK A 701 20 HETNAM TCK N-[(1S)-5-AMINO-1-(CHLOROACETYL)PENTYL]-4- HETNAM 2 TCK METHYLBENZENESULFONAMIDE HETSYN TCK TOS-LYS-CH2CL FORMUL 2 TCK C14 H21 CL N2 O3 S FORMUL 3 HOH *417(H2 O) HELIX 1 AA1 TYR A 25 ARG A 29 5 5 HELIX 2 AA2 ASP A 35 LEU A 53 1 19 HELIX 3 AA3 GLN A 56 ARG A 70 1 15 HELIX 4 AA4 GLY A 117 GLU A 122 1 6 HELIX 5 AA5 ASP A 209 ASP A 213 5 5 HELIX 6 AA6 ASP A 302 TRP A 306 5 5 HELIX 7 AA7 THR A 410 GLU A 412 5 3 HELIX 8 AA8 ASP A 438 PHE A 440 5 3 HELIX 9 AA9 ARG A 467 ASP A 472 1 6 HELIX 10 AB1 GLY A 489 ASP A 495 1 7 HELIX 11 AB2 GLY A 496 LYS A 500 5 5 HELIX 12 AB3 LYS A 501 GLN A 518 1 18 HELIX 13 AB4 SER A 532 ALA A 545 1 14 HELIX 14 AB5 PRO A 546 PHE A 549 5 4 HELIX 15 AB6 ASP A 560 LEU A 566 1 7 HELIX 16 AB7 GLN A 585 GLN A 594 1 10 HELIX 17 AB8 SER A 596 VAL A 601 1 6 HELIX 18 AB9 TYR A 622 LYS A 636 1 15 HELIX 19 AC1 LYS A 660 ALA A 676 1 17 SHEET 1 AA1 2 TYR A 12 THR A 16 0 SHEET 2 AA1 2 ASP A 19 ASP A 23 -1 O ASP A 23 N TYR A 12 SHEET 1 AA2 3 GLU A 75 HIS A 76 0 SHEET 2 AA2 3 TYR A 85 PHE A 91 -1 O PHE A 91 N GLU A 75 SHEET 3 AA2 3 TYR A 80 ARG A 82 -1 N TYR A 80 O TYR A 87 SHEET 1 AA3 4 GLU A 75 HIS A 76 0 SHEET 2 AA3 4 TYR A 85 PHE A 91 -1 O PHE A 91 N GLU A 75 SHEET 3 AA3 4 ILE A 99 PRO A 104 -1 O ILE A 99 N ARG A 90 SHEET 4 AA3 4 ASP A 112 ASP A 116 -1 O ASP A 112 N ARG A 102 SHEET 1 AA4 4 THR A 128 VAL A 134 0 SHEET 2 AA4 4 LYS A 140 ASP A 146 -1 O ASP A 146 N THR A 128 SHEET 3 AA4 4 TYR A 153 ASN A 159 -1 O LYS A 158 N LEU A 141 SHEET 4 AA4 4 SER A 164 TRP A 165 -1 O SER A 164 N ASN A 159 SHEET 1 AA5 7 THR A 128 VAL A 134 0 SHEET 2 AA5 7 LYS A 140 ASP A 146 -1 O ASP A 146 N THR A 128 SHEET 3 AA5 7 TYR A 153 ASN A 159 -1 O LYS A 158 N LEU A 141 SHEET 4 AA5 7 LEU A 170 TRP A 179 -1 O LEU A 170 N ILE A 155 SHEET 5 AA5 7 THR A 185 LYS A 191 -1 O LYS A 191 N ASN A 172 SHEET 6 AA5 7 PRO A 198 VAL A 205 -1 O HIS A 204 N VAL A 186 SHEET 7 AA5 7 GLU A 214 GLU A 218 -1 O ILE A 216 N VAL A 201 SHEET 1 AA6 4 TYR A 225 LYS A 230 0 SHEET 2 AA6 4 PHE A 236 SER A 242 -1 O SER A 242 N TYR A 225 SHEET 3 AA6 4 SER A 247 ASP A 253 -1 O GLU A 248 N LEU A 241 SHEET 4 AA6 4 GLN A 262 MET A 263 -1 O GLN A 262 N LEU A 251 SHEET 1 AA7 4 TYR A 273 TYR A 278 0 SHEET 2 AA7 4 HIS A 281 SER A 286 -1 O HIS A 281 N TYR A 278 SHEET 3 AA7 4 GLY A 294 SER A 298 -1 O TYR A 296 N ILE A 284 SHEET 4 AA7 4 GLN A 307 ILE A 310 -1 O LEU A 309 N LEU A 295 SHEET 1 AA8 4 MET A 317 LEU A 323 0 SHEET 2 AA8 4 TRP A 327 SER A 334 -1 O GLU A 331 N GLU A 319 SHEET 3 AA8 4 LEU A 337 HIS A 344 -1 O ARG A 341 N VAL A 330 SHEET 4 AA8 4 VAL A 350 ARG A 352 -1 O LYS A 351 N GLN A 342 SHEET 1 AA9 4 TYR A 360 LEU A 364 0 SHEET 2 AA9 4 LEU A 374 SER A 381 -1 O SER A 380 N THR A 361 SHEET 3 AA9 4 THR A 387 ASN A 392 -1 O THR A 387 N TYR A 379 SHEET 4 AA9 4 ARG A 398 GLN A 403 -1 O LYS A 402 N LEU A 388 SHEET 1 AB1 8 TYR A 414 LYS A 422 0 SHEET 2 AB1 8 GLU A 428 ARG A 436 -1 O VAL A 429 N VAL A 421 SHEET 3 AB1 8 VAL A 476 ALA A 480 -1 O LEU A 479 N SER A 432 SHEET 4 AB1 8 LEU A 447 TYR A 450 1 N TYR A 450 O VAL A 478 SHEET 5 AB1 8 VAL A 526 GLY A 531 1 O PHE A 527 N VAL A 449 SHEET 6 AB1 8 GLY A 551 GLN A 555 1 O GLN A 555 N GLY A 530 SHEET 7 AB1 8 HIS A 608 GLY A 614 1 O LEU A 610 N ALA A 554 SHEET 8 AB1 8 LEU A 642 ASP A 647 1 O LEU A 643 N VAL A 611 LINK NE2 HIS A 652 CM TCK A 701 1555 1555 1.47 CRYST1 75.529 89.660 108.650 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009204 0.00000