HEADER HYDROLASE 14-FEB-22 7YWS TITLE MODIFIED OLIGOPEPTIDASE B FROM S. PROTEOMACULANS IN INTERMEDIATE TITLE 2 CONFORMATION WITH 3 SPERMINE MOLECULES AT 1.7 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOPEPTIDASE B; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.83; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA PROTEAMACULANS; SOURCE 3 ORGANISM_TAXID: 28151; SOURCE 4 GENE: OPDB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.PETRENKO,K.M.BOYKO,A.Y.NIKOLAEVA,A.V.VLASKINA,A.G.MIKHAILOVA, AUTHOR 2 V.I.TIMOFEEV,T.V.RAKITINA REVDAT 2 31-JAN-24 7YWS 1 REMARK REVDAT 1 18-JAN-23 7YWS 0 JRNL AUTH V.V.BRITIKOV,V.I.TIMOFEEV,D.E.PETRENKO,E.V.BRITIKOVA, JRNL AUTH 2 A.Y.NIKOLAEVA,A.V.VLASKINA,K.M.BOYKO,A.G.MIKHAILOVA, JRNL AUTH 3 T.V.RAKITINA JRNL TITL ELUCIDATION OF THE CONFORMATIONAL TRANSITION OF JRNL TITL 2 OLIGOPEPTIDASE B BY AN INTEGRATIVE APPROACH BASED ON THE JRNL TITL 3 COMBINATION OF X-RAY, SAXS, AND ESSENTIAL DYNAMICS SAMPLING JRNL TITL 4 SIMULATION JRNL REF CRYSTALS V. 12 2022 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST12050712 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 82001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 518 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5756 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5210 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7813 ; 1.704 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11987 ; 1.449 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 7.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 355 ;31.405 ;22.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 926 ;14.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;21.083 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6603 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1415 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7YWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4629 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.16 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7OB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LITHIUM SULFATE, 100 MM BIS REMARK 280 -TRIS PH 5.5, 23% PEG 3350, COUNTER-DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.34000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.34000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 331 CD GLU A 331 OE1 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 73 -49.08 -28.31 REMARK 500 LYS A 194 -61.32 -105.59 REMARK 500 TYR A 199 -12.16 -151.94 REMARK 500 PHE A 264 -91.45 -89.40 REMARK 500 PHE A 293 149.12 71.12 REMARK 500 ALA A 365 -158.63 -96.45 REMARK 500 TYR A 452 -86.67 -126.20 REMARK 500 LEU A 498 -125.87 51.08 REMARK 500 SER A 532 -114.39 62.46 REMARK 500 ALA A 545 58.48 -141.17 REMARK 500 VAL A 556 61.17 28.97 REMARK 500 ASP A 560 54.13 -92.71 REMARK 500 LEU A 572 -35.78 94.04 REMARK 500 GLU A 579 -61.08 -98.63 REMARK 500 SER A 596 107.59 -43.36 REMARK 500 ASP A 617 -103.14 -77.42 REMARK 500 SER A 618 -157.32 154.14 REMARK 500 GLN A 619 -113.96 82.32 REMARK 500 HIS A 652 57.10 -146.80 REMARK 500 LYS A 655 -73.59 87.82 REMARK 500 SER A 656 26.20 -151.00 REMARK 500 ARG A 658 -70.81 -72.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 617 SER A 618 -149.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YWS A 2 677 UNP B3VI58 B3VI58_9GAMM 2 677 SEQADV 7YWS HIS A 1 UNP B3VI58 EXPRESSION TAG SEQADV 7YWS GLU A 71 UNP B3VI58 ILE 71 CONFLICT SEQADV 7YWS ASN A 72 UNP B3VI58 PRO 72 CONFLICT SEQADV 7YWS LEU A 73 UNP B3VI58 GLN 73 CONFLICT SEQADV 7YWS TYR A 74 UNP B3VI58 GLN 74 CONFLICT SEQADV 7YWS PHE A 75 UNP B3VI58 GLU 75 CONFLICT SEQADV 7YWS GLN A 76 UNP B3VI58 HIS 76 CONFLICT SEQRES 1 A 677 HIS MET THR PRO PRO LYS ALA GLU LYS ARG PRO TYR PRO SEQRES 2 A 677 ILE THR THR HIS GLY ASP THR ARG VAL ASP ASP TYR TYR SEQRES 3 A 677 TRP LEU ARG ASP ASP GLU ARG THR ASP PRO GLN VAL LEU SEQRES 4 A 677 ASP TYR LEU GLN ALA GLU ASN ALA PHE THR ASP ALA ALA SEQRES 5 A 677 LEU LYS PRO GLN GLN ALA LEU ARG GLU THR LEU TYR GLU SEQRES 6 A 677 GLU MET VAL ALA ARG GLU ASN LEU TYR PHE GLN SER VAL SEQRES 7 A 677 PRO TYR VAL ARG HIS GLY TYR ARG TYR GLN THR ARG PHE SEQRES 8 A 677 GLU PRO GLY ASN GLU TYR ALA ILE TYR VAL ARG GLN PRO SEQRES 9 A 677 GLN ALA GLU SER GLU HIS TRP ASP THR LEU ILE ASP GLY SEQRES 10 A 677 ASN GLN ARG ALA GLU GLN ARG GLU PHE TYR THR LEU GLY SEQRES 11 A 677 GLY LEU GLU VAL SER PRO ASP ASN GLN LYS LEU ALA VAL SEQRES 12 A 677 ALA GLU ASP PHE LEU SER ARG ARG GLN TYR ASP ILE ARG SEQRES 13 A 677 PHE LYS ASN LEU SER ASP ASP SER TRP THR ASP GLU VAL SEQRES 14 A 677 LEU GLU ASN THR SER GLY SER PHE GLU TRP ALA ASN ASP SEQRES 15 A 677 SER ALA THR VAL TYR TYR VAL ARG LYS HIS ALA LYS THR SEQRES 16 A 677 LEU LEU PRO TYR GLN VAL TYR ARG HIS VAL VAL GLY THR SEQRES 17 A 677 ASP PRO GLN LEU ASP GLU LEU ILE TYR GLU GLU GLN ASP SEQRES 18 A 677 ASP THR PHE TYR VAL GLY LEU GLU LYS THR THR SER ASP SEQRES 19 A 677 ARG PHE ILE LEU ILE HIS LEU SER SER THR THR THR SER SEQRES 20 A 677 GLU ILE LEU LEU LEU ASP ALA ASP ARG ALA ASP SER THR SEQRES 21 A 677 PRO GLN MET PHE VAL PRO ARG ARG LYS ASP HIS GLU TYR SEQRES 22 A 677 GLY ILE ASP HIS TYR HIS GLN HIS PHE TYR ILE ARG SER SEQRES 23 A 677 ASN LYS ASP GLY LYS ASN PHE GLY LEU TYR GLN SER GLU SEQRES 24 A 677 GLN ALA ASP GLU ALA GLN TRP GLN THR LEU ILE ALA PRO SEQRES 25 A 677 ARG ILE GLU VAL MET LEU GLU GLY PHE SER LEU PHE ARG SEQRES 26 A 677 ASP TRP LEU VAL VAL GLU GLU ARG SER GLU GLY LEU THR SEQRES 27 A 677 GLN LEU ARG GLN ILE HIS TRP GLN SER GLY GLU VAL LYS SEQRES 28 A 677 ARG ILE ALA PHE ASP ASP PRO THR TYR THR THR TRP LEU SEQRES 29 A 677 ALA TYR ASN PRO GLU PRO GLU THR GLU LEU LEU ARG TYR SEQRES 30 A 677 GLY TYR SER SER MET THR THR PRO THR THR LEU TYR GLU SEQRES 31 A 677 LEU ASN LEU ASP SER ASP GLU ARG VAL MET LEU LYS GLN SEQRES 32 A 677 GLN GLU VAL LYS ASN PHE THR PRO GLU ASN TYR ARG SER SEQRES 33 A 677 GLU ARG VAL TRP VAL LYS ALA ARG ASP GLY VAL GLU VAL SEQRES 34 A 677 PRO VAL SER LEU VAL TYR ARG HIS ASP SER PHE ALA ARG SEQRES 35 A 677 GLY THR ASN PRO LEU MET VAL TYR GLY TYR GLY SER TYR SEQRES 36 A 677 GLY SER SER MET ASP PRO ALA PHE SER ALA SER ARG LEU SEQRES 37 A 677 SER LEU LEU ASP ARG GLY PHE VAL PHE VAL LEU ALA HIS SEQRES 38 A 677 ILE ARG GLY GLY GLY GLU LEU GLY GLN LEU TRP TYR GLU SEQRES 39 A 677 ASP GLY LYS LEU PHE LYS LYS GLN ASN THR PHE ASN ASP SEQRES 40 A 677 PHE ILE ASP VAL THR GLU ALA LEU ILE ALA GLN GLY TYR SEQRES 41 A 677 GLY ASP ALA LYS ARG VAL PHE ALA MET GLY GLY SER ALA SEQRES 42 A 677 GLY GLY LEU LEU MET GLY ALA VAL ILE ASN GLN ALA PRO SEQRES 43 A 677 GLU LEU PHE ASN GLY ILE VAL ALA GLN VAL PRO PHE VAL SEQRES 44 A 677 ASP VAL VAL THR THR MET LEU ASP GLU SER ILE PRO LEU SEQRES 45 A 677 THR THR GLY GLU TYR ASP GLU TRP GLY ASN PRO ASN GLN SEQRES 46 A 677 GLN ALA TYR TYR ASP TYR ILE LEU GLN TYR SER PRO TYR SEQRES 47 A 677 ASP GLN VAL LYS ALA GLN ASP TYR PRO HIS MET LEU VAL SEQRES 48 A 677 THR THR GLY LEU HIS ASP SER GLN VAL GLN TYR TRP GLU SEQRES 49 A 677 PRO ALA LYS TRP VAL ALA LYS LEU ARG GLU LEU LYS THR SEQRES 50 A 677 ASP ASP ARG GLN LEU LEU LEU TYR THR ASP MET ASP SER SEQRES 51 A 677 GLY HIS GLY GLY LYS SER GLY ARG PHE LYS ALA TYR GLU SEQRES 52 A 677 ASP ILE ALA LEU GLU TYR ALA PHE ILE LEU ALA LEU ALA SEQRES 53 A 677 GLU HET SPM A 701 14 HET SPM A 702 14 HET SPM A 703 14 HETNAM SPM SPERMINE FORMUL 2 SPM 3(C10 H26 N4) FORMUL 5 HOH *518(H2 O) HELIX 1 AA1 TYR A 25 ARG A 29 5 5 HELIX 2 AA2 ASP A 35 LYS A 54 1 20 HELIX 3 AA3 GLN A 56 ARG A 70 1 15 HELIX 4 AA4 GLY A 117 ALA A 121 1 5 HELIX 5 AA5 ASP A 209 ASP A 213 5 5 HELIX 6 AA6 ASP A 302 TRP A 306 5 5 HELIX 7 AA7 THR A 410 GLU A 412 5 3 HELIX 8 AA8 ASP A 438 PHE A 440 5 3 HELIX 9 AA9 ARG A 467 ASP A 472 1 6 HELIX 10 AB1 GLY A 489 ASP A 495 1 7 HELIX 11 AB2 GLY A 496 LYS A 500 5 5 HELIX 12 AB3 LYS A 501 GLN A 518 1 18 HELIX 13 AB4 SER A 532 ALA A 545 1 14 HELIX 14 AB5 ASP A 560 LEU A 566 1 7 HELIX 15 AB6 LEU A 572 GLU A 576 5 5 HELIX 16 AB7 GLN A 585 SER A 596 1 12 HELIX 17 AB8 TYR A 622 LYS A 636 1 15 HELIX 18 AB9 GLY A 657 GLU A 677 1 21 SHEET 1 AA1 2 TYR A 12 THR A 16 0 SHEET 2 AA1 2 ASP A 19 ASP A 23 -1 O ARG A 21 N ILE A 14 SHEET 1 AA2 4 TYR A 80 ARG A 82 0 SHEET 2 AA2 4 TYR A 85 ARG A 90 -1 O TYR A 87 N TYR A 80 SHEET 3 AA2 4 ILE A 99 PRO A 104 -1 O GLN A 103 N ARG A 86 SHEET 4 AA2 4 ASP A 112 ASP A 116 -1 O ASP A 112 N ARG A 102 SHEET 1 AA3 4 THR A 128 VAL A 134 0 SHEET 2 AA3 4 LYS A 140 ASP A 146 -1 O ALA A 144 N GLY A 130 SHEET 3 AA3 4 TYR A 153 ASN A 159 -1 O ASP A 154 N GLU A 145 SHEET 4 AA3 4 SER A 164 TRP A 165 -1 O SER A 164 N ASN A 159 SHEET 1 AA4 7 THR A 128 VAL A 134 0 SHEET 2 AA4 7 LYS A 140 ASP A 146 -1 O ALA A 144 N GLY A 130 SHEET 3 AA4 7 TYR A 153 ASN A 159 -1 O ASP A 154 N GLU A 145 SHEET 4 AA4 7 LEU A 170 TRP A 179 -1 O THR A 173 N TYR A 153 SHEET 5 AA4 7 THR A 185 LYS A 191 -1 O TYR A 187 N GLU A 178 SHEET 6 AA4 7 PRO A 198 VAL A 205 -1 O HIS A 204 N VAL A 186 SHEET 7 AA4 7 GLU A 214 GLU A 218 -1 O ILE A 216 N VAL A 201 SHEET 1 AA5 4 TYR A 225 LYS A 230 0 SHEET 2 AA5 4 PHE A 236 SER A 242 -1 O HIS A 240 N GLY A 227 SHEET 3 AA5 4 SER A 247 ASP A 253 -1 O LEU A 250 N ILE A 239 SHEET 4 AA5 4 GLN A 262 MET A 263 -1 O GLN A 262 N LEU A 251 SHEET 1 AA6 4 TYR A 273 TYR A 278 0 SHEET 2 AA6 4 HIS A 281 SER A 286 -1 O HIS A 281 N TYR A 278 SHEET 3 AA6 4 GLY A 294 SER A 298 -1 O SER A 298 N PHE A 282 SHEET 4 AA6 4 GLN A 307 ILE A 310 -1 O GLN A 307 N GLN A 297 SHEET 1 AA7 4 MET A 317 LEU A 323 0 SHEET 2 AA7 4 TRP A 327 SER A 334 -1 O GLU A 331 N GLU A 319 SHEET 3 AA7 4 LEU A 337 HIS A 344 -1 O ARG A 341 N VAL A 330 SHEET 4 AA7 4 VAL A 350 ARG A 352 -1 O LYS A 351 N GLN A 342 SHEET 1 AA8 4 TYR A 360 LEU A 364 0 SHEET 2 AA8 4 LEU A 374 SER A 381 -1 O SER A 380 N THR A 361 SHEET 3 AA8 4 THR A 387 ASN A 392 -1 O THR A 387 N TYR A 379 SHEET 4 AA8 4 ARG A 398 GLN A 403 -1 O VAL A 399 N GLU A 390 SHEET 1 AA9 8 TYR A 414 LYS A 422 0 SHEET 2 AA9 8 GLU A 428 ARG A 436 -1 O VAL A 429 N VAL A 421 SHEET 3 AA9 8 VAL A 476 ALA A 480 -1 O LEU A 479 N SER A 432 SHEET 4 AA9 8 LEU A 447 TYR A 450 1 N TYR A 450 O VAL A 478 SHEET 5 AA9 8 VAL A 526 GLY A 531 1 O PHE A 527 N LEU A 447 SHEET 6 AA9 8 GLY A 551 GLN A 555 1 O GLN A 555 N GLY A 530 SHEET 7 AA9 8 HIS A 608 GLY A 614 1 O LEU A 610 N ALA A 554 SHEET 8 AA9 8 LEU A 642 ASP A 647 1 O ASP A 647 N THR A 613 CRYST1 72.400 100.450 108.680 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013812 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009201 0.00000