HEADER DNA BINDING PROTEIN 19-FEB-22 7YZE TITLE CRYSTAL STRUCTURE OF THE HUMAN FOXA2 BOUND TO THE TGTTTACT SITE TITLE 2 (FORKHEAD MOTIF GTAAACA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 3-BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNF-3-BETA,HNF-3B,FORKHEAD BOX PROTEIN A2,TRANSCRIPTION COMPND 5 FACTOR 3B,TCF-3B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*TP*TP*AP*CP*TP*GP*AP*GP*A)- COMPND 9 3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*CP*TP*CP*AP*GP*TP*AP*AP*AP*CP*AP*AP*TP*CP*T)- COMPND 14 3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FOXA2, HNF3B, TCF3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.PLUTA,M.J.MACIAS REVDAT 3 31-JAN-24 7YZE 1 REMARK REVDAT 2 07-DEC-22 7YZE 1 JRNL REVDAT 1 16-NOV-22 7YZE 0 JRNL AUTH R.PLUTA,E.ARAGON,N.A.PRESCOTT,L.RUIZ,R.A.MEES,B.BAGINSKI, JRNL AUTH 2 J.R.FLOOD,P.MARTIN-MALPARTIDA,J.MASSAGUE,Y.DAVID,M.J.MACIAS JRNL TITL MOLECULAR BASIS FOR DNA RECOGNITION BY THE MATERNAL PIONEER JRNL TITL 2 TRANSCRIPTION FACTOR FOXH1. JRNL REF NAT COMMUN V. 13 7279 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36435807 JRNL DOI 10.1038/S41467-022-34925-Y REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4080 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 15058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1800 - 3.3900 1.00 3564 166 0.1707 0.1692 REMARK 3 2 3.3900 - 2.6900 0.99 3365 195 0.2485 0.2630 REMARK 3 3 2.6900 - 2.3500 1.00 3378 172 0.2941 0.3248 REMARK 3 4 2.3500 - 2.1400 0.93 3148 155 0.3312 0.3330 REMARK 3 5 2.1400 - 1.9900 0.26 873 42 0.3101 0.3434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2063 -6.2601 -32.4339 REMARK 3 T TENSOR REMARK 3 T11: 0.5382 T22: 0.7667 REMARK 3 T33: 0.5840 T12: -0.0473 REMARK 3 T13: 0.0945 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 3.1814 L22: 1.6620 REMARK 3 L33: 0.4111 L12: -2.3071 REMARK 3 L13: 1.1195 L23: -0.6660 REMARK 3 S TENSOR REMARK 3 S11: -0.1743 S12: 0.7412 S13: -0.3199 REMARK 3 S21: 0.0835 S22: -0.0672 S23: 0.5832 REMARK 3 S31: 0.1683 S32: 0.5063 S33: 0.2335 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7496 -0.8713 -14.2911 REMARK 3 T TENSOR REMARK 3 T11: 0.3740 T22: 0.4908 REMARK 3 T33: 0.3761 T12: 0.0999 REMARK 3 T13: 0.0281 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 3.8044 L22: 8.1833 REMARK 3 L33: 5.5764 L12: 0.3151 REMARK 3 L13: 0.1681 L23: 0.8318 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.1187 S13: 0.2186 REMARK 3 S21: -0.1548 S22: -0.1495 S23: 0.2442 REMARK 3 S31: -0.2475 S32: 0.0263 S33: 0.1408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9707 -2.6448 -15.8515 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.6061 REMARK 3 T33: 0.9433 T12: 0.1351 REMARK 3 T13: -0.1232 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 2.5418 L22: 3.2355 REMARK 3 L33: 7.7664 L12: 2.0178 REMARK 3 L13: -1.1891 L23: 2.7107 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: 0.4806 S13: 0.3490 REMARK 3 S21: -0.7842 S22: 0.0558 S23: 2.1429 REMARK 3 S31: -0.1561 S32: -0.6731 S33: -0.2255 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1380 -24.8765 -20.1697 REMARK 3 T TENSOR REMARK 3 T11: 1.0354 T22: 0.8000 REMARK 3 T33: 1.1644 T12: 0.3104 REMARK 3 T13: 0.0521 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 2.2151 L22: 4.3477 REMARK 3 L33: 4.3321 L12: -1.3125 REMARK 3 L13: -1.8508 L23: 0.4494 REMARK 3 S TENSOR REMARK 3 S11: -1.0097 S12: 1.5325 S13: -2.9531 REMARK 3 S21: -0.2227 S22: -0.2492 S23: -0.4174 REMARK 3 S31: 0.5638 S32: 0.5190 S33: 0.9961 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5405 -25.9856 -13.1228 REMARK 3 T TENSOR REMARK 3 T11: 1.0425 T22: 0.8542 REMARK 3 T33: 1.4119 T12: 0.3130 REMARK 3 T13: -0.0023 T23: 0.1570 REMARK 3 L TENSOR REMARK 3 L11: 4.6946 L22: 7.3002 REMARK 3 L33: 7.6726 L12: 3.2865 REMARK 3 L13: -0.0288 L23: -2.6813 REMARK 3 S TENSOR REMARK 3 S11: 1.0507 S12: -0.3496 S13: -2.0728 REMARK 3 S21: 1.3664 S22: -0.8146 S23: 1.3125 REMARK 3 S31: 0.6880 S32: 0.2078 S33: -0.2636 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9098 -12.7879 -20.8234 REMARK 3 T TENSOR REMARK 3 T11: 0.7811 T22: 0.6598 REMARK 3 T33: 0.7247 T12: 0.1434 REMARK 3 T13: -0.1478 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 8.1656 L22: 4.5867 REMARK 3 L33: 4.6623 L12: 4.7319 REMARK 3 L13: -2.1185 L23: 1.0250 REMARK 3 S TENSOR REMARK 3 S11: -0.5295 S12: 0.9771 S13: -0.7517 REMARK 3 S21: -0.3906 S22: 0.1694 S23: 0.4032 REMARK 3 S31: 0.0528 S32: -0.4969 S33: 0.4009 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0632 3.0674 -13.0126 REMARK 3 T TENSOR REMARK 3 T11: 0.6352 T22: 0.7257 REMARK 3 T33: 1.1285 T12: 0.0951 REMARK 3 T13: 0.0252 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 8.8882 L22: 4.3043 REMARK 3 L33: 8.1481 L12: 5.4056 REMARK 3 L13: 2.5360 L23: 4.3333 REMARK 3 S TENSOR REMARK 3 S11: 0.6776 S12: -0.6233 S13: 0.9677 REMARK 3 S21: 1.0878 S22: -1.9251 S23: 2.7408 REMARK 3 S31: -0.5036 S32: -0.8121 S33: 0.9981 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15071 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.985 REMARK 200 RESOLUTION RANGE LOW (A) : 46.185 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5X07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.39750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.39750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.01750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.18450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.01750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.18450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.39750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.01750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.18450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.39750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.01750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.18450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 149 REMARK 465 THR A 150 REMARK 465 TYR A 151 REMARK 465 SER A 239 REMARK 465 GLY A 240 REMARK 465 ASN A 241 REMARK 465 MET A 242 REMARK 465 PHE A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 GLY A 246 REMARK 465 CYS A 247 REMARK 465 TYR A 248 REMARK 465 LEU A 249 REMARK 465 ARG A 250 REMARK 465 ARG A 251 REMARK 465 GLN A 252 REMARK 465 LYS A 253 REMARK 465 ARG A 254 REMARK 465 PHE A 255 REMARK 465 LYS A 256 REMARK 465 CYS A 257 REMARK 465 GLU A 258 REMARK 465 LYS A 259 REMARK 465 GLN A 260 REMARK 465 LEU A 261 REMARK 465 ALA A 262 REMARK 465 LEU A 263 REMARK 465 LYS A 264 REMARK 465 GLU A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 GLY A 268 REMARK 465 ALA A 269 REMARK 465 ALA A 270 REMARK 465 GLY A 271 REMARK 465 SER A 272 REMARK 465 GLY A 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H THR A 156 HH TYR A 162 3554 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 15 O3' DC C 15 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA B 16 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 211 O REMARK 620 2 SER A 212 O 75.0 REMARK 620 3 ASN A 214 O 76.5 90.0 REMARK 620 4 PHE A 217 O 94.3 165.5 77.8 REMARK 620 5 HOH A 410 O 130.0 62.1 79.0 122.0 REMARK 620 6 HOH B 103 O 96.5 85.6 172.5 105.6 104.1 REMARK 620 N 1 2 3 4 5 DBREF 7YZE A 149 273 UNP Q9Y261 FOXA2_HUMAN 149 273 DBREF 7YZE B 1 16 PDB 7YZE 7YZE 1 16 DBREF 7YZE C 1 16 PDB 7YZE 7YZE 1 16 SEQRES 1 A 125 LYS THR TYR ARG ARG SER TYR THR HIS ALA LYS PRO PRO SEQRES 2 A 125 TYR SER TYR ILE SER LEU ILE THR MET ALA ILE GLN GLN SEQRES 3 A 125 SER PRO ASN LYS MET LEU THR LEU SER GLU ILE TYR GLN SEQRES 4 A 125 TRP ILE MET ASP LEU PHE PRO PHE TYR ARG GLN ASN GLN SEQRES 5 A 125 GLN ARG TRP GLN ASN SER ILE ARG HIS SER LEU SER PHE SEQRES 6 A 125 ASN ASP CYS PHE LEU LYS VAL PRO ARG SER PRO ASP LYS SEQRES 7 A 125 PRO GLY LYS GLY SER PHE TRP THR LEU HIS PRO ASP SER SEQRES 8 A 125 GLY ASN MET PHE GLU ASN GLY CYS TYR LEU ARG ARG GLN SEQRES 9 A 125 LYS ARG PHE LYS CYS GLU LYS GLN LEU ALA LEU LYS GLU SEQRES 10 A 125 ALA ALA GLY ALA ALA GLY SER GLY SEQRES 1 B 16 DA DG DA DT DT DG DT DT DT DA DC DT DG SEQRES 2 B 16 DA DG DA SEQRES 1 C 16 DT DC DT DC DA DG DT DA DA DA DC DA DA SEQRES 2 C 16 DT DC DT HET K A 301 1 HET SO4 A 302 5 HETNAM K POTASSIUM ION HETNAM SO4 SULFATE ION FORMUL 4 K K 1+ FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *28(H2 O) HELIX 1 AA1 SER A 163 GLN A 174 1 12 HELIX 2 AA2 LEU A 182 PHE A 193 1 12 HELIX 3 AA3 PRO A 194 GLN A 198 5 5 HELIX 4 AA4 ASN A 199 ASN A 214 1 16 SHEET 1 AA1 3 LEU A 180 THR A 181 0 SHEET 2 AA1 3 PHE A 232 LEU A 235 -1 O TRP A 233 N LEU A 180 SHEET 3 AA1 3 PHE A 217 VAL A 220 -1 N VAL A 220 O PHE A 232 LINK O LEU A 211 K K A 301 1555 1555 2.95 LINK O SER A 212 K K A 301 1555 1555 3.25 LINK O ASN A 214 K K A 301 1555 1555 3.09 LINK O PHE A 217 K K A 301 1555 1555 2.92 LINK K K A 301 O HOH A 410 1555 1555 2.64 LINK K K A 301 O HOH B 103 1555 1555 2.90 CRYST1 46.035 92.369 118.795 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021723 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008418 0.00000