HEADER OXIDOREDUCTASE 21-FEB-22 7YZT TITLE CRYSTAL STRUCTURE OF A DYE-DECOLORIZING (DYP) PEROXIDASE FROM TITLE 2 ACINETOBACTER RADIORESISTENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYP-TYPE PEROXIDASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER RADIORESISTENS; SOURCE 3 ORGANISM_TAXID: 40216; SOURCE 4 GENE: HMPREF0018_02696; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BIOCATALYSIS; DYE-DECOLORIZING; PEROXIDASE; HEME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHANG,G.CATUCCI,G.GILARDI,S.J.SADEGHI,G.DI NARDO REVDAT 2 07-FEB-24 7YZT 1 REMARK REVDAT 1 25-JAN-23 7YZT 0 JRNL AUTH G.CATUCCI,C.ZHANG,G.DI NARDO,S.J.SADEGHI,G.GILARDI JRNL TITL CRYSTAL STRUCTURE OF A DECOLORIZING PEROXIDASE (DYP) FROM JRNL TITL 2 ACINETOBACTER RADIORESISTENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.880 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 89765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1300 - 5.7500 0.99 3077 165 0.1858 0.1842 REMARK 3 2 5.7400 - 4.5600 1.00 2937 153 0.1454 0.1600 REMARK 3 3 4.5600 - 3.9900 0.99 2912 140 0.1255 0.1407 REMARK 3 4 3.9800 - 3.6200 1.00 2871 180 0.1319 0.1413 REMARK 3 5 3.6200 - 3.3600 0.99 2872 133 0.1454 0.2007 REMARK 3 6 3.3600 - 3.1600 1.00 2872 151 0.1627 0.1959 REMARK 3 7 3.1600 - 3.0000 1.00 2861 165 0.1716 0.2000 REMARK 3 8 3.0000 - 2.8700 1.00 2862 151 0.1706 0.1964 REMARK 3 9 2.8700 - 2.7600 1.00 2819 145 0.1700 0.2219 REMARK 3 10 2.7600 - 2.6700 1.00 2837 137 0.1690 0.2043 REMARK 3 11 2.6700 - 2.5800 1.00 2871 123 0.1746 0.2095 REMARK 3 12 2.5800 - 2.5100 1.00 2785 204 0.1744 0.2102 REMARK 3 13 2.5100 - 2.4400 1.00 2837 150 0.1769 0.2306 REMARK 3 14 2.4400 - 2.3900 1.00 2819 139 0.1723 0.2123 REMARK 3 15 2.3900 - 2.3300 1.00 2852 137 0.1722 0.1996 REMARK 3 16 2.3300 - 2.2800 1.00 2831 139 0.1715 0.2151 REMARK 3 17 2.2800 - 2.2400 1.00 2826 147 0.1640 0.2150 REMARK 3 18 2.2400 - 2.1900 1.00 2784 184 0.1727 0.2219 REMARK 3 19 2.1900 - 2.1500 1.00 2778 158 0.1690 0.2319 REMARK 3 20 2.1500 - 2.1200 1.00 2830 132 0.1750 0.2464 REMARK 3 21 2.1200 - 2.0800 1.00 2847 156 0.1789 0.2161 REMARK 3 22 2.0800 - 2.0500 1.00 2798 135 0.1821 0.2071 REMARK 3 23 2.0500 - 2.0200 1.00 2845 160 0.1908 0.2265 REMARK 3 24 2.0200 - 1.9900 1.00 2784 146 0.1981 0.2149 REMARK 3 25 1.9900 - 1.9700 0.99 2771 130 0.2017 0.2192 REMARK 3 26 1.9700 - 1.9400 1.00 2830 171 0.2050 0.2552 REMARK 3 27 1.9400 - 1.9200 1.00 2783 118 0.2121 0.2592 REMARK 3 28 1.9200 - 1.8900 1.00 2846 156 0.2284 0.2704 REMARK 3 29 1.8900 - 1.8700 1.00 2824 127 0.2330 0.2455 REMARK 3 30 1.8700 - 1.8500 1.00 2797 175 0.2430 0.2915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 28.7749 15.9381 4.5745 REMARK 3 T TENSOR REMARK 3 T11: 0.1090 T22: 0.1703 REMARK 3 T33: 0.1591 T12: 0.0249 REMARK 3 T13: -0.0271 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.0090 L22: 0.2245 REMARK 3 L33: 0.2385 L12: 0.0387 REMARK 3 L13: -0.0568 L23: 0.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: -0.0111 S13: -0.0133 REMARK 3 S21: 0.0186 S22: 0.0328 S23: -0.0094 REMARK 3 S31: 0.0261 S32: 0.0140 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89853 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GT2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 100 MM TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 154.37933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.18967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.18967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 154.37933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -207.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 755 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 924 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 928 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 779 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 806 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 307 REMARK 465 GLU A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 MET B 0 REMARK 465 LEU B 307 REMARK 465 GLU B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 MET C 0 REMARK 465 LEU C 307 REMARK 465 GLU C 308 REMARK 465 HIS C 309 REMARK 465 HIS C 310 REMARK 465 HIS C 311 REMARK 465 HIS C 312 REMARK 465 HIS C 313 REMARK 465 HIS C 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 1 N REMARK 470 GLY B 1 N REMARK 470 GLY C 1 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 279 O HOH B 501 2.01 REMARK 500 O ASP B 134 O HOH B 502 2.06 REMARK 500 O HOH B 827 O HOH B 845 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 -104.88 49.53 REMARK 500 PHE A 133 -135.42 47.80 REMARK 500 ASP A 288 -155.54 -159.63 REMARK 500 LYS B 23 -109.21 50.50 REMARK 500 LYS B 69 46.34 -79.20 REMARK 500 GLN B 82 67.93 -118.37 REMARK 500 PHE B 133 -137.97 49.95 REMARK 500 LYS C 23 -108.45 53.02 REMARK 500 PHE C 133 -135.88 50.32 REMARK 500 ASP C 288 -155.94 -161.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 217 NE2 REMARK 620 2 HEM A 401 NA 91.9 REMARK 620 3 HEM A 401 NB 86.5 89.9 REMARK 620 4 HEM A 401 NC 96.0 171.9 91.7 REMARK 620 5 HEM A 401 ND 99.7 90.4 173.7 87.1 REMARK 620 6 HOH A 547 O 167.1 79.7 83.7 92.7 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 217 NE2 REMARK 620 2 HEM B 401 NA 92.2 REMARK 620 3 HEM B 401 NB 83.2 89.1 REMARK 620 4 HEM B 401 NC 90.8 176.5 89.4 REMARK 620 5 HEM B 401 ND 99.1 91.3 177.7 90.1 REMARK 620 6 HOH B 730 O 166.2 82.3 84.2 94.4 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 217 NE2 REMARK 620 2 HEM C 401 NA 90.7 REMARK 620 3 HEM C 401 NB 84.9 89.5 REMARK 620 4 HEM C 401 NC 95.5 173.8 91.2 REMARK 620 5 HEM C 401 ND 99.7 89.9 175.4 89.0 REMARK 620 6 HOH C 693 O 165.0 83.6 81.2 90.4 94.2 REMARK 620 N 1 2 3 4 5 DBREF1 7YZT A 2 306 UNP A0A7U8KHV7_ACIRA DBREF2 7YZT A A0A7U8KHV7 6 310 DBREF1 7YZT B 2 306 UNP A0A7U8KHV7_ACIRA DBREF2 7YZT B A0A7U8KHV7 6 310 DBREF1 7YZT C 2 306 UNP A0A7U8KHV7_ACIRA DBREF2 7YZT C A0A7U8KHV7 6 310 SEQADV 7YZT MET A 0 UNP A0A7U8KHV INITIATING METHIONINE SEQADV 7YZT GLY A 1 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT LEU A 307 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT GLU A 308 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS A 309 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS A 310 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS A 311 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS A 312 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS A 313 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS A 314 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT MET B 0 UNP A0A7U8KHV INITIATING METHIONINE SEQADV 7YZT GLY B 1 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT LEU B 307 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT GLU B 308 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS B 309 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS B 310 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS B 311 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS B 312 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS B 313 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS B 314 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT MET C 0 UNP A0A7U8KHV INITIATING METHIONINE SEQADV 7YZT GLY C 1 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT LEU C 307 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT GLU C 308 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS C 309 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS C 310 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS C 311 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS C 312 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS C 313 UNP A0A7U8KHV EXPRESSION TAG SEQADV 7YZT HIS C 314 UNP A0A7U8KHV EXPRESSION TAG SEQRES 1 A 315 MET GLY THR ALA GLN SER VAL ILE LEU PRO LEU PRO SER SEQRES 2 A 315 ASP HIS ALA ARG PHE ILE SER LEU ARG LEU LYS ASP LEU SEQRES 3 A 315 SER VAL ALA GLU LEU LYS LYS HIS ILE ALA LEU LEU HIS SEQRES 4 A 315 SER THR ARG ASP ARG LEU ILE THR GLN HIS PRO ALA ALA SEQRES 5 A 315 GLN ILE LYS ALA ALA VAL ALA PHE GLY PRO GLU ILE TRP SEQRES 6 A 315 LEU GLN LEU TYR LYS GLU MET PRO SER GLY PHE LYS GLN SEQRES 7 A 315 LEU ALA PRO GLN GLN GLY THR PHE GLN MET PRO VAL VAL SEQRES 8 A 315 PRO ALA ASP VAL PHE ILE HIS ILE ALA SER ALA ARG ALA SEQRES 9 A 315 ASP ILE CYS PHE ALA LEU SER GLN ALA PHE PHE GLU GLY SEQRES 10 A 315 ILE LYS ASP LYS VAL GLU VAL LEU ASP GLU ARG VAL CYS SEQRES 11 A 315 PHE ARG TYR PHE ASP GLY ARG ASP ILE THR GLY PHE ILE SEQRES 12 A 315 ASP GLY THR GLU ASN PRO GLN PHE ASN ASP ASP ARG ALA SEQRES 13 A 315 GLU VAL ALA LEU LEU PRO GLU ASP SER GLY VAL PHE ALA SEQRES 14 A 315 ASP GLY SER PHE ILE PHE ALA GLN ARG TYR ALA HIS ASP SEQRES 15 A 315 LEU GLU LYS TRP LYS ARG LEU LYS VAL ASP THR GLN GLU SEQRES 16 A 315 GLN ILE MET GLY ARG THR LYS LEU GLU SER ILE GLU LEU SEQRES 17 A 315 ASP ASN GLU VAL LYS PRO GLU ASN ALA HIS ILE ALA ARG SEQRES 18 A 315 THR VAL VAL GLU ASP GLU ASN GLY GLU GLU MET GLU ILE SEQRES 19 A 315 LEU ARG HIS SER LEU PRO TYR GLY ASP GLY LYS GLY ASP SEQRES 20 A 315 GLN GLY LEU PHE PHE ILE ALA TYR THR LYS ASP LEU ASN SEQRES 21 A 315 ILE ILE ASP LEU MET LEU ASN ARG MET PHE GLY THR SER SEQRES 22 A 315 GLY ASP GLY ILE HIS ASP ARG LEU LEU HIS PHE VAL THR SEQRES 23 A 315 PRO LEU ASP GLY ALA TYR TYR PHE ALA PRO SER ALA GLU SEQRES 24 A 315 LEU LEU GLU VAL ILE LEU GLU SER LEU GLU HIS HIS HIS SEQRES 25 A 315 HIS HIS HIS SEQRES 1 B 315 MET GLY THR ALA GLN SER VAL ILE LEU PRO LEU PRO SER SEQRES 2 B 315 ASP HIS ALA ARG PHE ILE SER LEU ARG LEU LYS ASP LEU SEQRES 3 B 315 SER VAL ALA GLU LEU LYS LYS HIS ILE ALA LEU LEU HIS SEQRES 4 B 315 SER THR ARG ASP ARG LEU ILE THR GLN HIS PRO ALA ALA SEQRES 5 B 315 GLN ILE LYS ALA ALA VAL ALA PHE GLY PRO GLU ILE TRP SEQRES 6 B 315 LEU GLN LEU TYR LYS GLU MET PRO SER GLY PHE LYS GLN SEQRES 7 B 315 LEU ALA PRO GLN GLN GLY THR PHE GLN MET PRO VAL VAL SEQRES 8 B 315 PRO ALA ASP VAL PHE ILE HIS ILE ALA SER ALA ARG ALA SEQRES 9 B 315 ASP ILE CYS PHE ALA LEU SER GLN ALA PHE PHE GLU GLY SEQRES 10 B 315 ILE LYS ASP LYS VAL GLU VAL LEU ASP GLU ARG VAL CYS SEQRES 11 B 315 PHE ARG TYR PHE ASP GLY ARG ASP ILE THR GLY PHE ILE SEQRES 12 B 315 ASP GLY THR GLU ASN PRO GLN PHE ASN ASP ASP ARG ALA SEQRES 13 B 315 GLU VAL ALA LEU LEU PRO GLU ASP SER GLY VAL PHE ALA SEQRES 14 B 315 ASP GLY SER PHE ILE PHE ALA GLN ARG TYR ALA HIS ASP SEQRES 15 B 315 LEU GLU LYS TRP LYS ARG LEU LYS VAL ASP THR GLN GLU SEQRES 16 B 315 GLN ILE MET GLY ARG THR LYS LEU GLU SER ILE GLU LEU SEQRES 17 B 315 ASP ASN GLU VAL LYS PRO GLU ASN ALA HIS ILE ALA ARG SEQRES 18 B 315 THR VAL VAL GLU ASP GLU ASN GLY GLU GLU MET GLU ILE SEQRES 19 B 315 LEU ARG HIS SER LEU PRO TYR GLY ASP GLY LYS GLY ASP SEQRES 20 B 315 GLN GLY LEU PHE PHE ILE ALA TYR THR LYS ASP LEU ASN SEQRES 21 B 315 ILE ILE ASP LEU MET LEU ASN ARG MET PHE GLY THR SER SEQRES 22 B 315 GLY ASP GLY ILE HIS ASP ARG LEU LEU HIS PHE VAL THR SEQRES 23 B 315 PRO LEU ASP GLY ALA TYR TYR PHE ALA PRO SER ALA GLU SEQRES 24 B 315 LEU LEU GLU VAL ILE LEU GLU SER LEU GLU HIS HIS HIS SEQRES 25 B 315 HIS HIS HIS SEQRES 1 C 315 MET GLY THR ALA GLN SER VAL ILE LEU PRO LEU PRO SER SEQRES 2 C 315 ASP HIS ALA ARG PHE ILE SER LEU ARG LEU LYS ASP LEU SEQRES 3 C 315 SER VAL ALA GLU LEU LYS LYS HIS ILE ALA LEU LEU HIS SEQRES 4 C 315 SER THR ARG ASP ARG LEU ILE THR GLN HIS PRO ALA ALA SEQRES 5 C 315 GLN ILE LYS ALA ALA VAL ALA PHE GLY PRO GLU ILE TRP SEQRES 6 C 315 LEU GLN LEU TYR LYS GLU MET PRO SER GLY PHE LYS GLN SEQRES 7 C 315 LEU ALA PRO GLN GLN GLY THR PHE GLN MET PRO VAL VAL SEQRES 8 C 315 PRO ALA ASP VAL PHE ILE HIS ILE ALA SER ALA ARG ALA SEQRES 9 C 315 ASP ILE CYS PHE ALA LEU SER GLN ALA PHE PHE GLU GLY SEQRES 10 C 315 ILE LYS ASP LYS VAL GLU VAL LEU ASP GLU ARG VAL CYS SEQRES 11 C 315 PHE ARG TYR PHE ASP GLY ARG ASP ILE THR GLY PHE ILE SEQRES 12 C 315 ASP GLY THR GLU ASN PRO GLN PHE ASN ASP ASP ARG ALA SEQRES 13 C 315 GLU VAL ALA LEU LEU PRO GLU ASP SER GLY VAL PHE ALA SEQRES 14 C 315 ASP GLY SER PHE ILE PHE ALA GLN ARG TYR ALA HIS ASP SEQRES 15 C 315 LEU GLU LYS TRP LYS ARG LEU LYS VAL ASP THR GLN GLU SEQRES 16 C 315 GLN ILE MET GLY ARG THR LYS LEU GLU SER ILE GLU LEU SEQRES 17 C 315 ASP ASN GLU VAL LYS PRO GLU ASN ALA HIS ILE ALA ARG SEQRES 18 C 315 THR VAL VAL GLU ASP GLU ASN GLY GLU GLU MET GLU ILE SEQRES 19 C 315 LEU ARG HIS SER LEU PRO TYR GLY ASP GLY LYS GLY ASP SEQRES 20 C 315 GLN GLY LEU PHE PHE ILE ALA TYR THR LYS ASP LEU ASN SEQRES 21 C 315 ILE ILE ASP LEU MET LEU ASN ARG MET PHE GLY THR SER SEQRES 22 C 315 GLY ASP GLY ILE HIS ASP ARG LEU LEU HIS PHE VAL THR SEQRES 23 C 315 PRO LEU ASP GLY ALA TYR TYR PHE ALA PRO SER ALA GLU SEQRES 24 C 315 LEU LEU GLU VAL ILE LEU GLU SER LEU GLU HIS HIS HIS SEQRES 25 C 315 HIS HIS HIS HET HEM A 401 43 HET HEM B 401 43 HET HEM C 401 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 4 HEM 3(C34 H32 FE N4 O4) FORMUL 7 HOH *1222(H2 O) HELIX 1 AA1 SER A 26 HIS A 48 1 23 HELIX 2 AA2 GLY A 60 TYR A 68 1 9 HELIX 3 AA3 ARG A 102 GLU A 115 1 14 HELIX 4 AA4 PHE A 150 LEU A 159 1 10 HELIX 5 AA5 PRO A 161 ALA A 168 5 8 HELIX 6 AA6 ASP A 181 ARG A 187 1 7 HELIX 7 AA7 LYS A 189 GLY A 198 1 10 HELIX 8 AA8 ALA A 216 VAL A 222 1 7 HELIX 9 AA9 ASP A 257 GLY A 270 1 14 HELIX 10 AB1 ASP A 278 HIS A 282 5 5 HELIX 11 AB2 SER A 296 SER A 306 1 11 HELIX 12 AB3 SER B 26 HIS B 48 1 23 HELIX 13 AB4 GLY B 60 TYR B 68 1 9 HELIX 14 AB5 ARG B 102 GLU B 115 1 14 HELIX 15 AB6 PHE B 150 LEU B 159 1 10 HELIX 16 AB7 PRO B 161 ALA B 168 5 8 HELIX 17 AB8 ASP B 181 ARG B 187 1 7 HELIX 18 AB9 LYS B 189 GLY B 198 1 10 HELIX 19 AC1 ALA B 216 VAL B 222 1 7 HELIX 20 AC2 ASP B 257 GLY B 270 1 14 HELIX 21 AC3 ASP B 278 HIS B 282 5 5 HELIX 22 AC4 SER B 296 SER B 306 1 11 HELIX 23 AC5 SER C 26 HIS C 48 1 23 HELIX 24 AC6 GLY C 60 TYR C 68 1 9 HELIX 25 AC7 ARG C 102 GLU C 115 1 14 HELIX 26 AC8 PHE C 150 LEU C 159 1 10 HELIX 27 AC9 PRO C 161 ALA C 168 5 8 HELIX 28 AD1 ASP C 181 ARG C 187 1 7 HELIX 29 AD2 LYS C 189 GLY C 198 1 10 HELIX 30 AD3 ALA C 216 VAL C 222 1 7 HELIX 31 AD4 ASP C 257 GLY C 270 1 14 HELIX 32 AD5 ASP C 278 HIS C 282 5 5 HELIX 33 AD6 SER C 296 SER C 306 1 11 SHEET 1 AA1 4 LYS A 54 PHE A 59 0 SHEET 2 AA1 4 VAL A 94 SER A 100 -1 O HIS A 97 N ALA A 56 SHEET 3 AA1 4 HIS A 14 ARG A 21 -1 N ILE A 18 O ILE A 96 SHEET 4 AA1 4 GLU A 122 PHE A 130 -1 O ARG A 127 N PHE A 17 SHEET 1 AA2 2 GLN A 81 GLN A 82 0 SHEET 2 AA2 2 GLN A 86 MET A 87 -1 O MET A 87 N GLN A 81 SHEET 1 AA3 4 LEU A 234 ARG A 235 0 SHEET 2 AA3 4 GLN A 247 THR A 255 -1 O TYR A 254 N LEU A 234 SHEET 3 AA3 4 SER A 171 HIS A 180 -1 N GLN A 176 O PHE A 251 SHEET 4 AA3 4 VAL A 284 PRO A 286 -1 O THR A 285 N ALA A 179 SHEET 1 AA4 4 LEU A 238 GLY A 241 0 SHEET 2 AA4 4 GLN A 247 THR A 255 -1 O PHE A 250 N LEU A 238 SHEET 3 AA4 4 SER A 171 HIS A 180 -1 N GLN A 176 O PHE A 251 SHEET 4 AA4 4 ALA A 290 ALA A 294 -1 O ALA A 294 N SER A 171 SHEET 1 AA5 2 VAL A 223 GLU A 224 0 SHEET 2 AA5 2 GLU A 230 MET A 231 -1 O MET A 231 N VAL A 223 SHEET 1 AA6 4 LYS B 54 PHE B 59 0 SHEET 2 AA6 4 VAL B 94 SER B 100 -1 O PHE B 95 N ALA B 58 SHEET 3 AA6 4 HIS B 14 ARG B 21 -1 N ILE B 18 O ILE B 96 SHEET 4 AA6 4 GLU B 122 PHE B 130 -1 O ARG B 127 N PHE B 17 SHEET 1 AA7 2 GLN B 81 GLN B 82 0 SHEET 2 AA7 2 GLN B 86 MET B 87 -1 O MET B 87 N GLN B 81 SHEET 1 AA8 4 LEU B 234 ARG B 235 0 SHEET 2 AA8 4 GLN B 247 THR B 255 -1 O TYR B 254 N LEU B 234 SHEET 3 AA8 4 SER B 171 HIS B 180 -1 N TYR B 178 O LEU B 249 SHEET 4 AA8 4 VAL B 284 PRO B 286 -1 O THR B 285 N ALA B 179 SHEET 1 AA9 4 LEU B 238 GLY B 241 0 SHEET 2 AA9 4 GLN B 247 THR B 255 -1 O PHE B 250 N LEU B 238 SHEET 3 AA9 4 SER B 171 HIS B 180 -1 N TYR B 178 O LEU B 249 SHEET 4 AA9 4 ALA B 290 ALA B 294 -1 O ALA B 294 N SER B 171 SHEET 1 AB1 2 VAL B 223 GLU B 224 0 SHEET 2 AB1 2 GLU B 230 MET B 231 -1 O MET B 231 N VAL B 223 SHEET 1 AB2 4 LYS C 54 PHE C 59 0 SHEET 2 AB2 4 VAL C 94 SER C 100 -1 O PHE C 95 N ALA C 58 SHEET 3 AB2 4 HIS C 14 ARG C 21 -1 N ARG C 16 O ILE C 98 SHEET 4 AB2 4 GLU C 122 PHE C 130 -1 O GLU C 122 N ARG C 21 SHEET 1 AB3 2 GLN C 81 GLN C 82 0 SHEET 2 AB3 2 GLN C 86 MET C 87 -1 O MET C 87 N GLN C 81 SHEET 1 AB4 4 LEU C 234 ARG C 235 0 SHEET 2 AB4 4 GLN C 247 THR C 255 -1 O TYR C 254 N LEU C 234 SHEET 3 AB4 4 SER C 171 HIS C 180 -1 N HIS C 180 O GLN C 247 SHEET 4 AB4 4 VAL C 284 PRO C 286 -1 O THR C 285 N ALA C 179 SHEET 1 AB5 4 LEU C 238 GLY C 241 0 SHEET 2 AB5 4 GLN C 247 THR C 255 -1 O PHE C 250 N LEU C 238 SHEET 3 AB5 4 SER C 171 HIS C 180 -1 N HIS C 180 O GLN C 247 SHEET 4 AB5 4 ALA C 290 ALA C 294 -1 O ALA C 294 N SER C 171 SHEET 1 AB6 2 VAL C 223 GLU C 224 0 SHEET 2 AB6 2 GLU C 230 MET C 231 -1 O MET C 231 N VAL C 223 LINK NE2 HIS A 217 FE HEM A 401 1555 1555 2.19 LINK FE HEM A 401 O HOH A 547 1555 1555 2.61 LINK NE2 HIS B 217 FE HEM B 401 1555 1555 2.29 LINK FE HEM B 401 O HOH B 730 1555 1555 2.47 LINK NE2 HIS C 217 FE HEM C 401 1555 1555 2.16 LINK FE HEM C 401 O HOH C 693 1555 1555 2.61 CRYST1 88.140 88.140 231.569 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011346 0.006550 0.000000 0.00000 SCALE2 0.000000 0.013101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004318 0.00000