HEADER HYDROLASE 21-FEB-22 7Z00 TITLE CRYSTAL STRUCTURE OF VIBRIO ALKALINE PHOSPHATASE IN 1.0 M KBR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO SP. G15-21; SOURCE 3 ORGANISM_TAXID: 169049; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: LEMO21 KEYWDS ALKALINE PHOSPHATASE, AP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MARKUSSON,J.G.HJORLEIFSSON,P.KURSULA,B.ASGEIRSSON REVDAT 2 31-JAN-24 7Z00 1 REMARK REVDAT 1 02-NOV-22 7Z00 0 JRNL AUTH S.MARKUSSON,J.G.HJORLEIFSSON,P.KURSULA,B.ASGEIRSSON JRNL TITL STRUCTURAL CHARACTERIZATION OF FUNCTIONALLY IMPORTANT JRNL TITL 2 CHLORIDE BINDING SITES IN THE MARINE VIBRIO ALKALINE JRNL TITL 3 PHOSPHATASE. JRNL REF BIOCHEMISTRY V. 61 2248 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 36194497 JRNL DOI 10.1021/ACS.BIOCHEM.2C00438 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3958 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3900 - 7.1700 1.00 1264 140 0.1990 0.2260 REMARK 3 2 7.1600 - 5.6900 1.00 1270 133 0.2242 0.3015 REMARK 3 3 5.6900 - 4.9700 1.00 1276 136 0.2075 0.2210 REMARK 3 4 4.9700 - 4.5200 1.00 1253 140 0.1927 0.2328 REMARK 3 5 4.5200 - 4.1900 1.00 1261 142 0.1850 0.2330 REMARK 3 6 4.1900 - 3.9500 1.00 1251 143 0.2217 0.2466 REMARK 3 7 3.9500 - 3.7500 1.00 1288 142 0.2176 0.3200 REMARK 3 8 3.7500 - 3.5900 0.96 1216 135 0.2802 0.3664 REMARK 3 9 3.5900 - 3.4500 1.00 1252 144 0.2749 0.2814 REMARK 3 10 3.4500 - 3.3300 1.00 1246 134 0.2868 0.3617 REMARK 3 11 3.3300 - 3.2300 1.00 1276 142 0.2823 0.3000 REMARK 3 12 3.2300 - 3.1300 1.00 1280 145 0.2925 0.4228 REMARK 3 13 3.1300 - 3.0500 1.00 1275 140 0.3291 0.3847 REMARK 3 14 3.0500 - 2.9800 1.00 1225 135 0.3070 0.4294 REMARK 3 15 2.9800 - 2.9100 1.00 1279 137 0.3368 0.4026 REMARK 3 16 2.9100 - 2.8500 1.00 1253 138 0.3525 0.4195 REMARK 3 17 2.8500 - 2.7900 1.00 1269 136 0.3529 0.3852 REMARK 3 18 2.7900 - 2.7400 1.00 1260 142 0.3585 0.3785 REMARK 3 19 2.7400 - 2.6900 1.00 1273 141 0.3683 0.4364 REMARK 3 20 2.6900 - 2.6400 1.00 1248 136 0.3639 0.3949 REMARK 3 21 2.6400 - 2.6000 1.00 1270 138 0.3975 0.4261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.447 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.789 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3999 REMARK 3 ANGLE : 0.988 5411 REMARK 3 CHIRALITY : 0.039 586 REMARK 3 PLANARITY : 0.005 714 REMARK 3 DIHEDRAL : 17.835 1477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Z00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : XSCALE FEB 5, 2021 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 209590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.120 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.21 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 3E2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.4 MG/ML PROTEIN IN 24% PEG3350, 1.0 REMARK 280 M KBR AND 0.1 M TRIS PH 7.0. GROWN FROM SEED CRYSTALS GROWN IN REMARK 280 24% PEG3350, 0.4 M KBR, PH 7.0., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.62500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.06000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.62500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.06000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.62500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.06000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.62500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.06000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -18 REMARK 465 LYS B -17 REMARK 465 PRO B -16 REMARK 465 ILE B -15 REMARK 465 VAL B -14 REMARK 465 THR B -13 REMARK 465 ALA B -12 REMARK 465 VAL B -11 REMARK 465 VAL B -10 REMARK 465 THR B -9 REMARK 465 SER B -8 REMARK 465 THR B -7 REMARK 465 LEU B -6 REMARK 465 SER B -5 REMARK 465 PHE B -4 REMARK 465 ASN B -3 REMARK 465 VAL B -2 REMARK 465 LEU B -1 REMARK 465 SER B 0 REMARK 465 SER B 503 REMARK 465 ALA B 504 REMARK 465 TRP B 505 REMARK 465 SER B 506 REMARK 465 HIS B 507 REMARK 465 PRO B 508 REMARK 465 GLN B 509 REMARK 465 PHE B 510 REMARK 465 GLU B 511 REMARK 465 LYS B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 401 O HOH B 701 1.48 REMARK 500 OE2 GLU B 47 HH TYR B 299 1.56 REMARK 500 OG1 THR B 401 O HOH B 701 1.87 REMARK 500 OG SER B 278 OD2 ASP B 443 2.13 REMARK 500 O ALA B 389 ND2 ASN B 393 2.14 REMARK 500 OE1 GLU B 317 OG1 THR B 466 2.16 REMARK 500 OG SER B 65 O3 PO4 B 606 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 239 HE22 GLN B 420 6445 1.43 REMARK 500 OE2 GLU B 2 NZ LYS B 163 8545 2.03 REMARK 500 OE2 GLU B 239 NE2 GLN B 420 6445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 172 CE LYS B 172 NZ 0.207 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 172 CB - CG - CD ANGL. DEV. = 18.9 DEGREES REMARK 500 LYS B 172 CD - CE - NZ ANGL. DEV. = -41.2 DEGREES REMARK 500 LYS B 332 CB - CG - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 LYS B 332 CD - CE - NZ ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 31 52.78 -109.69 REMARK 500 LYS B 35 45.08 36.32 REMARK 500 THR B 112 -110.30 -107.36 REMARK 500 ALA B 123 30.54 -160.53 REMARK 500 SER B 149 -166.84 -177.42 REMARK 500 SER B 223 -108.90 -123.00 REMARK 500 HIS B 316 -178.20 -179.37 REMARK 500 ASP B 329 78.21 53.46 REMARK 500 PHE B 341 42.03 -96.71 REMARK 500 ASN B 414 109.96 -55.54 REMARK 500 THR B 464 -151.08 -121.37 REMARK 500 PRO B 477 122.21 -32.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 OD1 REMARK 620 2 ASP B 12 OD2 56.3 REMARK 620 3 SER B 65 OG 72.1 100.8 REMARK 620 4 ASP B 315 OD2 70.8 123.7 78.3 REMARK 620 5 HIS B 316 NE2 153.8 148.8 100.2 83.2 REMARK 620 6 PO4 B 606 O3 113.7 85.3 64.4 137.0 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 OD1 REMARK 620 2 THR B 118 OG1 61.6 REMARK 620 3 GLU B 268 OE2 73.2 60.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 45 O REMARK 620 2 GLN B 46 O 81.6 REMARK 620 3 GLY B 48 O 82.4 120.8 REMARK 620 4 SER B 485 O 101.6 172.1 53.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 273 OD1 REMARK 620 2 ASP B 273 OD2 70.2 REMARK 620 3 HIS B 277 NE2 84.2 91.3 REMARK 620 4 HIS B 465 NE2 94.2 161.1 76.1 REMARK 620 5 PO4 B 606 O2 175.0 104.8 95.6 90.6 REMARK 620 6 PO4 B 606 O3 109.5 99.1 165.0 96.2 71.4 REMARK 620 N 1 2 3 4 5 DBREF 7Z00 B -18 502 UNP Q93P54 Q93P54_9VIBR 1 521 SEQADV 7Z00 SER B 503 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 ALA B 504 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 TRP B 505 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 SER B 506 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 HIS B 507 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 PRO B 508 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 GLN B 509 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 PHE B 510 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 GLU B 511 UNP Q93P54 EXPRESSION TAG SEQADV 7Z00 LYS B 512 UNP Q93P54 EXPRESSION TAG SEQRES 1 B 531 MET LYS PRO ILE VAL THR ALA VAL VAL THR SER THR LEU SEQRES 2 B 531 SER PHE ASN VAL LEU SER ALA GLU ILE LYS ASN VAL ILE SEQRES 3 B 531 LEU MET ILE GLY ASP GLY MET GLY PRO GLN GLN VAL GLY SEQRES 4 B 531 LEU LEU GLU THR TYR ALA ASN GLN ALA PRO ASN SER ILE SEQRES 5 B 531 TYR LYS GLY ASN LYS THR ALA ILE TYR GLN LEU ALA GLN SEQRES 6 B 531 GLU GLY VAL ILE GLY SER SER LEU THR HIS PRO GLU ASP SEQRES 7 B 531 ALA ILE VAL VAL ASP SER ALA CYS SER ALA THR MET LEU SEQRES 8 B 531 ALA THR GLY ILE TYR SER SER SER GLU VAL ILE GLY ILE SEQRES 9 B 531 ASP SER GLN GLY ASN HIS VAL GLU THR VAL LEU GLU LYS SEQRES 10 B 531 ALA LYS LYS ALA GLY LYS ALA THR GLY LEU VAL SER ASP SEQRES 11 B 531 THR ARG LEU THR HIS ALA THR PRO ALA SER PHE ALA ALA SEQRES 12 B 531 HIS GLN PRO HIS ARG SER LEU GLU ASN GLN ILE ALA SER SEQRES 13 B 531 ASP MET LEU ALA THR GLY ALA ASP VAL MET LEU SER GLY SEQRES 14 B 531 GLY LEU ARG HIS TRP ILE PRO LYS SER THR ASN ASP LYS SEQRES 15 B 531 GLY GLU THR TYR LYS GLN LEU GLU LYS LEU THR GLN GLY SEQRES 16 B 531 ASP VAL TYR LEU LYS SER LYS ARG LYS ASP ASP ARG ASN SEQRES 17 B 531 LEU LEU THR GLU ALA GLU LYS ASP GLY TYR GLN LEU ALA SEQRES 18 B 531 PHE ASN ARG ASN MET LEU ASP ASP ALA LYS GLY ASP LYS SEQRES 19 B 531 LEU LEU GLY LEU PHE ALA TYR SER GLY MET ASP ASP GLY SEQRES 20 B 531 ILE ALA TYR SER ASN LYS LYS LYS SER GLY GLU ARG THR SEQRES 21 B 531 GLN PRO SER LEU LYS GLU MET THR GLN LYS ALA LEU ASN SEQRES 22 B 531 ILE LEU SER LYS ASP GLU ASP GLY PHE PHE LEU MET VAL SEQRES 23 B 531 GLU GLY GLY GLN ILE ASP TRP ALA GLY HIS SER ASN ASP SEQRES 24 B 531 ALA GLY THR MET LEU HIS GLU LEU LEU LYS PHE ASP GLU SEQRES 25 B 531 ALA ILE GLN THR VAL TYR GLU TRP ALA LYS ASP ARG GLU SEQRES 26 B 531 ASP THR ILE VAL ILE VAL THR ALA ASP HIS GLU THR GLY SEQRES 27 B 531 SER PHE GLY PHE SER TYR SER SER ASN ASP LEU PRO LYS SEQRES 28 B 531 PRO GLN LYS ARG SER GLY GLU ALA PHE ALA ASP ARG ASP SEQRES 29 B 531 TYR ALA PRO ASN PHE ASN PHE GLY ALA PHE ASP ILE LEU SEQRES 30 B 531 ASP GLY LEU TYR ASN GLN LYS GLN SER TYR TYR GLY MET SEQRES 31 B 531 ILE SER GLU PHE GLN LYS LEU ASP LYS SER LEU GLN THR SEQRES 32 B 531 PRO GLU LYS LEU ALA GLU ILE VAL ASN LYS ASN SER GLU SEQRES 33 B 531 PHE PRO ILE THR ALA GLU GLN ALA LYS ASN VAL LEU ALA SEQRES 34 B 531 SER LYS PRO ASN PRO TYR ARG LEU ALA GLN HIS LYS TYR SEQRES 35 B 531 LEU SER ALA GLU GLU VAL PRO ALA ILE ASN ASP PHE ASP SEQRES 36 B 531 ALA PHE PHE PRO TYR ASN ASP ARG GLY ASN LEU LEU ALA SEQRES 37 B 531 ARG GLU GLN ALA THR GLY GLN ASN ILE VAL TRP GLY THR SEQRES 38 B 531 GLY THR HIS THR HIS THR PRO VAL ASN VAL PHE ALA TRP SEQRES 39 B 531 GLY PRO ALA GLU LYS ILE LEU PRO VAL SER LYS ILE MET SEQRES 40 B 531 HIS HIS SER GLU LEU GLY GLU TYR ILE LYS GLN GLN VAL SEQRES 41 B 531 ASN SER ALA TRP SER HIS PRO GLN PHE GLU LYS HET ZN B 601 1 HET ZN B 602 1 HET BR B 603 1 HET MG B 604 1 HET MG B 605 1 HET PO4 B 606 5 HETNAM ZN ZINC ION HETNAM BR BROMIDE ION HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 BR BR 1- FORMUL 5 MG 2(MG 2+) FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *3(H2 O) HELIX 1 AA1 GLY B 15 ALA B 29 1 15 HELIX 2 AA2 THR B 39 GLY B 48 1 10 HELIX 3 AA3 ASP B 64 GLY B 75 1 12 HELIX 4 AA4 THR B 94 GLY B 103 1 10 HELIX 5 AA5 HIS B 116 SER B 121 1 6 HELIX 6 AA6 LEU B 131 GLY B 143 1 13 HELIX 7 AA7 GLY B 151 TRP B 155 5 5 HELIX 8 AA8 PRO B 157 LYS B 163 5 7 HELIX 9 AA9 GLY B 164 THR B 174 1 11 HELIX 10 AB1 ASN B 189 ASP B 197 1 9 HELIX 11 AB2 ASN B 204 ALA B 211 1 8 HELIX 12 AB3 ASP B 227 SER B 237 1 11 HELIX 13 AB4 SER B 244 SER B 257 1 14 HELIX 14 AB5 GLY B 270 SER B 278 1 9 HELIX 15 AB6 ASP B 280 LYS B 303 1 24 HELIX 16 AB7 ASP B 356 ASN B 363 1 8 HELIX 17 AB8 SER B 367 LYS B 377 1 11 HELIX 18 AB9 THR B 384 ASN B 395 1 12 HELIX 19 AC1 THR B 401 ALA B 410 1 10 HELIX 20 AC2 PHE B 435 PHE B 439 5 5 HELIX 21 AC3 ARG B 444 ASN B 457 1 14 HELIX 22 AC4 PRO B 477 LEU B 482 1 6 HELIX 23 AC5 PRO B 483 SER B 485 5 3 HELIX 24 AC6 HIS B 490 VAL B 501 1 12 SHEET 1 AA110 GLN B 200 ALA B 202 0 SHEET 2 AA110 LEU B 216 LEU B 219 1 O LEU B 217 N GLN B 200 SHEET 3 AA110 VAL B 146 GLY B 150 1 N MET B 147 O GLY B 218 SHEET 4 AA110 ALA B 105 ARG B 113 1 N LEU B 108 O LEU B 148 SHEET 5 AA110 PHE B 263 GLY B 269 1 O PHE B 264 N ALA B 105 SHEET 6 AA110 ASN B 5 GLY B 11 1 N ILE B 10 O VAL B 267 SHEET 7 AA110 THR B 308 THR B 313 1 O ILE B 311 N MET B 9 SHEET 8 AA110 VAL B 470 TRP B 475 -1 O PHE B 473 N VAL B 312 SHEET 9 AA110 VAL B 49 LEU B 54 -1 N GLY B 51 O VAL B 472 SHEET 10 AA110 ILE B 487 HIS B 489 1 O MET B 488 N LEU B 54 SHEET 1 AA2 2 GLU B 317 THR B 318 0 SHEET 2 AA2 2 HIS B 465 THR B 466 -1 O THR B 466 N GLU B 317 SHEET 1 AA3 2 GLY B 322 PHE B 323 0 SHEET 2 AA3 2 ILE B 458 VAL B 459 -1 O VAL B 459 N GLY B 322 SHEET 1 AA4 2 SER B 411 PRO B 413 0 SHEET 2 AA4 2 GLU B 428 PRO B 430 -1 O VAL B 429 N LYS B 412 LINK OD1 ASP B 12 ZN ZN B 602 1555 1555 2.59 LINK OD2 ASP B 12 ZN ZN B 602 1555 1555 1.85 LINK OD1 ASP B 12 MG MG B 604 1555 1555 2.57 LINK O ALA B 45 MG MG B 605 1555 4555 2.58 LINK O GLN B 46 MG MG B 605 1555 4555 2.52 LINK O GLY B 48 MG MG B 605 1555 4555 1.94 LINK OG SER B 65 ZN ZN B 602 1555 1555 1.93 LINK OG1 THR B 118 MG MG B 604 1555 1555 2.53 LINK OE2 GLU B 268 MG MG B 604 1555 1555 2.59 LINK OD1 ASP B 273 ZN ZN B 601 1555 1555 1.79 LINK OD2 ASP B 273 ZN ZN B 601 1555 1555 2.03 LINK NE2 HIS B 277 ZN ZN B 601 1555 1555 2.29 LINK OD2 ASP B 315 ZN ZN B 602 1555 1555 1.98 LINK NE2 HIS B 316 ZN ZN B 602 1555 1555 2.28 LINK NE2 HIS B 465 ZN ZN B 601 1555 1555 2.26 LINK O SER B 485 MG MG B 605 1555 1555 2.48 LINK ZN ZN B 601 O2 PO4 B 606 1555 1555 1.99 LINK ZN ZN B 601 O3 PO4 B 606 1555 1555 2.24 LINK ZN ZN B 602 O3 PO4 B 606 1555 1555 2.11 CRYST1 99.250 118.120 84.400 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011848 0.00000