HEADER OXYGEN BINDING 25-FEB-22 7Z1U TITLE BIOCHEMICAL IMPLICATIONS OF THE SUBSTITUTION OF A UNIQUE CYSTEINE TITLE 2 RESIDUE IN SUGAR BEET PHYTOGLOBIN BVPGB 1.2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SYMBIOTIC HEMOGLOBIN CLASS 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETA VULGARIS; SOURCE 3 ORGANISM_TAXID: 161934; SOURCE 4 GENE: BV9_224250_AAYD.T2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHYTOGLOBIN, GLOBIN FOLD, REDOX BALANCE, CYSTEINE SUBSTITUTION, KEYWDS 2 OXYGEN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.NYBLOM,S.CHRISTENSEN,N.LEIVA ERIKSSON,L.BULOW REVDAT 2 31-JAN-24 7Z1U 1 REMARK REVDAT 1 07-SEP-22 7Z1U 0 JRNL AUTH S.CHRISTENSEN,L.GROTH,N.LEIVA-ERIKSSON,M.NYBLOM,L.BULOW JRNL TITL OXIDATIVE IMPLICATIONS OF SUBSTITUTING A CONSERVED CYSTEINE JRNL TITL 2 RESIDUE IN SUGAR BEET PHYTOGLOBIN BVPGB 1.2. JRNL REF ANTIOXIDANTS V. 11 2022 JRNL REFN ESSN 2076-3921 JRNL PMID 36009334 JRNL DOI 10.3390/ANTIOX11081615 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5900 - 4.0700 1.00 2498 158 0.2109 0.2483 REMARK 3 2 4.0700 - 3.2300 1.00 2485 131 0.2832 0.3159 REMARK 3 3 3.2300 - 2.8200 1.00 2441 161 0.3104 0.3221 REMARK 3 4 2.8200 - 2.5700 0.98 2446 132 0.3260 0.3278 REMARK 3 5 2.5700 - 2.3800 0.99 2442 99 0.3529 0.3526 REMARK 3 6 2.3800 - 2.2400 0.98 2449 116 0.3919 0.4667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.313 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 44.824 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2436 REMARK 3 ANGLE : 0.534 3296 REMARK 3 CHIRALITY : 0.036 354 REMARK 3 PLANARITY : 0.003 397 REMARK 3 DIHEDRAL : 13.717 1434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5395 -0.2744 -23.9339 REMARK 3 T TENSOR REMARK 3 T11: 1.0346 T22: 0.3121 REMARK 3 T33: 1.0239 T12: 0.0550 REMARK 3 T13: 0.1424 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 4.0310 L22: 4.8198 REMARK 3 L33: 6.4167 L12: -1.8199 REMARK 3 L13: 0.2804 L23: -4.4034 REMARK 3 S TENSOR REMARK 3 S11: 0.3353 S12: -0.1557 S13: 0.6166 REMARK 3 S21: 1.1472 S22: 0.0027 S23: 0.6946 REMARK 3 S31: -1.0813 S32: 0.0246 S33: -0.0887 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9078 -9.9276 -24.0268 REMARK 3 T TENSOR REMARK 3 T11: 1.0296 T22: 0.7546 REMARK 3 T33: 1.4571 T12: -0.0277 REMARK 3 T13: -0.3756 T23: 0.1766 REMARK 3 L TENSOR REMARK 3 L11: 1.7751 L22: 1.6298 REMARK 3 L33: 8.0431 L12: 0.7752 REMARK 3 L13: -2.3078 L23: -3.6111 REMARK 3 S TENSOR REMARK 3 S11: -1.6815 S12: 0.4169 S13: 1.1495 REMARK 3 S21: 1.1125 S22: -1.5657 S23: -0.2818 REMARK 3 S31: -2.2713 S32: 1.5467 S33: 2.4765 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8378 -2.4332 -34.6711 REMARK 3 T TENSOR REMARK 3 T11: 0.9492 T22: 0.3197 REMARK 3 T33: 0.7994 T12: -0.0543 REMARK 3 T13: 0.0068 T23: 0.1394 REMARK 3 L TENSOR REMARK 3 L11: 6.8813 L22: 5.2814 REMARK 3 L33: 9.5489 L12: -1.6434 REMARK 3 L13: 3.2456 L23: -4.0683 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: 0.3589 S13: 0.3333 REMARK 3 S21: -0.4822 S22: 0.3217 S23: 0.5464 REMARK 3 S31: 0.3026 S32: -0.1777 S33: -0.0633 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7665 -16.4732 -34.8533 REMARK 3 T TENSOR REMARK 3 T11: 1.2796 T22: 0.2936 REMARK 3 T33: 0.7913 T12: 0.0390 REMARK 3 T13: 0.1685 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 8.2446 L22: 3.5806 REMARK 3 L33: 5.3211 L12: 0.8860 REMARK 3 L13: 2.1668 L23: -3.8751 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: 1.3616 S13: -1.6349 REMARK 3 S21: -1.8465 S22: 0.6367 S23: 0.7637 REMARK 3 S31: 1.2747 S32: 1.4646 S33: 0.1989 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1750 -7.3974 -20.1177 REMARK 3 T TENSOR REMARK 3 T11: 0.7402 T22: 0.4085 REMARK 3 T33: 0.7096 T12: 0.1227 REMARK 3 T13: 0.1432 T23: 0.1315 REMARK 3 L TENSOR REMARK 3 L11: 5.6630 L22: 7.9427 REMARK 3 L33: 5.4275 L12: -0.1032 REMARK 3 L13: -0.4400 L23: -6.4315 REMARK 3 S TENSOR REMARK 3 S11: 0.3255 S12: -0.3591 S13: -0.1930 REMARK 3 S21: 1.8629 S22: 0.0341 S23: 0.5309 REMARK 3 S31: -1.1153 S32: -0.4859 S33: -0.3449 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5610 8.1822 -16.1209 REMARK 3 T TENSOR REMARK 3 T11: 2.2981 T22: 0.2877 REMARK 3 T33: 0.8639 T12: 0.4574 REMARK 3 T13: 0.7882 T23: -0.2901 REMARK 3 L TENSOR REMARK 3 L11: 9.7680 L22: 6.2987 REMARK 3 L33: 2.2986 L12: -4.2996 REMARK 3 L13: 2.8111 L23: -3.7604 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: -1.4987 S13: 2.2064 REMARK 3 S21: 2.4517 S22: 0.1760 S23: -0.2671 REMARK 3 S31: -1.6932 S32: -0.1228 S33: -0.7512 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4900 -7.5672 -29.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.8736 T22: 0.5418 REMARK 3 T33: 1.1428 T12: -0.0013 REMARK 3 T13: -0.1861 T23: 0.2868 REMARK 3 L TENSOR REMARK 3 L11: 3.1877 L22: 9.8522 REMARK 3 L33: 7.0738 L12: -1.8777 REMARK 3 L13: 0.3581 L23: 3.0146 REMARK 3 S TENSOR REMARK 3 S11: 0.5964 S12: 0.1614 S13: -0.4036 REMARK 3 S21: -1.7600 S22: 0.4705 S23: 2.7551 REMARK 3 S31: -0.5429 S32: -1.1960 S33: -0.3641 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9671 -15.3753 -0.1050 REMARK 3 T TENSOR REMARK 3 T11: 2.2786 T22: 0.7528 REMARK 3 T33: 1.1339 T12: 0.1224 REMARK 3 T13: 0.3795 T23: 0.0603 REMARK 3 L TENSOR REMARK 3 L11: 5.0436 L22: 3.7773 REMARK 3 L33: 5.1850 L12: 0.7695 REMARK 3 L13: -1.7117 L23: -2.8493 REMARK 3 S TENSOR REMARK 3 S11: 0.9580 S12: -1.0790 S13: 0.6770 REMARK 3 S21: 3.3077 S22: 0.2650 S23: 0.6651 REMARK 3 S31: -1.1260 S32: -0.5185 S33: -0.8702 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0957 -18.0445 -8.0235 REMARK 3 T TENSOR REMARK 3 T11: 0.7166 T22: 1.0696 REMARK 3 T33: 2.4556 T12: -0.2015 REMARK 3 T13: 0.3334 T23: 0.2848 REMARK 3 L TENSOR REMARK 3 L11: 2.6085 L22: 3.0530 REMARK 3 L33: 8.5016 L12: -2.7756 REMARK 3 L13: 4.6762 L23: -5.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.1516 S12: -0.5694 S13: 2.9984 REMARK 3 S21: 1.7693 S22: 0.8456 S23: -0.0624 REMARK 3 S31: -1.7643 S32: -1.3107 S33: -1.9343 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3220 -23.0214 2.8315 REMARK 3 T TENSOR REMARK 3 T11: 2.1495 T22: 0.8668 REMARK 3 T33: 0.9020 T12: 0.0438 REMARK 3 T13: 0.3444 T23: 0.1918 REMARK 3 L TENSOR REMARK 3 L11: 2.9157 L22: 8.4956 REMARK 3 L33: 6.4010 L12: 1.0121 REMARK 3 L13: 2.8345 L23: -2.9776 REMARK 3 S TENSOR REMARK 3 S11: 1.6242 S12: -2.2327 S13: 0.8338 REMARK 3 S21: 2.2183 S22: 0.8859 S23: 1.9369 REMARK 3 S31: -2.9343 S32: -2.3202 S33: -1.5108 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6684 -31.9721 -6.5294 REMARK 3 T TENSOR REMARK 3 T11: 0.8598 T22: 0.6404 REMARK 3 T33: 1.0479 T12: -0.1858 REMARK 3 T13: -0.2188 T23: 0.2729 REMARK 3 L TENSOR REMARK 3 L11: 5.6600 L22: 2.7233 REMARK 3 L33: 2.9117 L12: -1.6938 REMARK 3 L13: -1.0005 L23: -0.5797 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: -1.9719 S13: -1.3771 REMARK 3 S21: 1.4988 S22: 1.4558 S23: 0.8462 REMARK 3 S31: 1.8408 S32: -0.5290 S33: -1.2857 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2012 -15.1364 -8.2162 REMARK 3 T TENSOR REMARK 3 T11: 0.9874 T22: 0.4138 REMARK 3 T33: 0.7240 T12: 0.1036 REMARK 3 T13: 0.0654 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 3.2383 L22: 3.5512 REMARK 3 L33: 2.8547 L12: 1.6131 REMARK 3 L13: -0.8577 L23: -2.9923 REMARK 3 S TENSOR REMARK 3 S11: 0.6859 S12: -1.1643 S13: 0.2547 REMARK 3 S21: 2.0738 S22: -0.0542 S23: 0.5863 REMARK 3 S31: -1.1592 S32: -0.9043 S33: -0.8091 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0468 -4.8718 2.8828 REMARK 3 T TENSOR REMARK 3 T11: 3.5213 T22: 0.7858 REMARK 3 T33: 1.7550 T12: -0.3298 REMARK 3 T13: 0.3581 T23: -0.3302 REMARK 3 L TENSOR REMARK 3 L11: 4.6831 L22: 3.3827 REMARK 3 L33: 4.6123 L12: 1.4809 REMARK 3 L13: 0.0172 L23: 2.9222 REMARK 3 S TENSOR REMARK 3 S11: -0.3460 S12: -0.1258 S13: -0.0648 REMARK 3 S21: 0.8848 S22: 0.1182 S23: 1.4819 REMARK 3 S31: 0.8987 S32: -0.1362 S33: 0.2591 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8584 -21.3304 -2.8675 REMARK 3 T TENSOR REMARK 3 T11: 1.4020 T22: 0.6298 REMARK 3 T33: 0.7472 T12: -0.1769 REMARK 3 T13: -0.2975 T23: 0.1186 REMARK 3 L TENSOR REMARK 3 L11: 7.5882 L22: 2.2188 REMARK 3 L33: 5.7634 L12: 1.4106 REMARK 3 L13: 0.2645 L23: 2.4465 REMARK 3 S TENSOR REMARK 3 S11: 0.1450 S12: -0.8348 S13: 0.3359 REMARK 3 S21: 2.1092 S22: -0.0402 S23: -0.8915 REMARK 3 S31: -0.4278 S32: 0.9117 S33: -0.0546 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4406 -37.9630 -15.5282 REMARK 3 T TENSOR REMARK 3 T11: 0.8777 T22: 0.8620 REMARK 3 T33: 1.1891 T12: 0.3072 REMARK 3 T13: 0.1732 T23: -0.1058 REMARK 3 L TENSOR REMARK 3 L11: 3.0261 L22: 3.8310 REMARK 3 L33: 2.8235 L12: 2.7489 REMARK 3 L13: 0.3881 L23: 2.0528 REMARK 3 S TENSOR REMARK 3 S11: -1.1340 S12: 0.2411 S13: 0.4307 REMARK 3 S21: 1.3629 S22: -0.1918 S23: -1.1871 REMARK 3 S31: 0.4624 S32: 0.4768 S33: 0.1648 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 8 THROUGH 51 OR REMARK 3 RESID 60 THROUGH 91 OR RESID 96 THROUGH REMARK 3 160 OR RESID 1163)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 8 THROUGH 160 OR REMARK 3 RESID 1163)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Z1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292119622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.242 REMARK 200 RESOLUTION RANGE LOW (A) : 60.675 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZHW.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB (SODIUM MALONATE DIBASIC REMARK 280 MONOHYDRATE, IMIDAZOLE, BORIC ACID) PH 8.0, 25 % (W/V) PEG 1500., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.96000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 SER A -6 REMARK 465 PHE A -5 REMARK 465 THR A -4 REMARK 465 ASN A -3 REMARK 465 VAL A -2 REMARK 465 ASN A -1 REMARK 465 TYR A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 VAL A 53 REMARK 465 ARG A 54 REMARK 465 ASP A 55 REMARK 465 SER A 56 REMARK 465 ASP A 57 REMARK 465 VAL A 58 REMARK 465 PRO A 59 REMARK 465 THR A 161 REMARK 465 GLN A 162 REMARK 465 PRO A 163 REMARK 465 MET B -7 REMARK 465 SER B -6 REMARK 465 PHE B -5 REMARK 465 THR B -4 REMARK 465 ASN B -3 REMARK 465 VAL B -2 REMARK 465 ASN B -1 REMARK 465 TYR B 0 REMARK 465 PRO B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 GLY B 5 REMARK 465 THR B 6 REMARK 465 VAL B 7 REMARK 465 PHE B 52 REMARK 465 VAL B 53 REMARK 465 ARG B 54 REMARK 465 ASP B 55 REMARK 465 SER B 56 REMARK 465 ASP B 57 REMARK 465 VAL B 58 REMARK 465 PRO B 59 REMARK 465 PHE B 92 REMARK 465 GLY B 93 REMARK 465 GLU B 94 REMARK 465 SER B 95 REMARK 465 GLN B 162 REMARK 465 PRO B 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 129 O HOH A 301 2.06 REMARK 500 N TRP A 133 O HOH A 301 2.16 REMARK 500 O PRO A 135 O HOH A 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 19.30 59.12 REMARK 500 ARG A 158 32.56 -97.51 REMARK 500 LEU A 159 50.79 -104.82 REMARK 500 GLN B 62 -86.36 -90.55 REMARK 500 ALA B 128 -102.66 -85.03 REMARK 500 ARG B 158 36.84 -88.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HEM A 201 NA 99.6 REMARK 620 3 HEM A 201 NB 90.2 89.4 REMARK 620 4 HEM A 201 NC 75.2 174.8 90.0 REMARK 620 5 HEM A 201 ND 81.6 90.9 171.7 88.9 REMARK 620 6 HIS A 104 NE2 157.9 94.2 72.6 90.6 115.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 69 NE2 REMARK 620 2 HEM B 201 NA 83.8 REMARK 620 3 HEM B 201 NB 92.6 89.5 REMARK 620 4 HEM B 201 NC 93.2 177.0 89.9 REMARK 620 5 HEM B 201 ND 84.3 90.3 176.9 90.1 REMARK 620 6 HIS B 104 NE2 167.8 108.2 85.8 74.8 97.3 REMARK 620 N 1 2 3 4 5 DBREF 7Z1U A -7 163 UNP V5QR23 V5QR23_BETVV 1 171 DBREF 7Z1U B -7 163 UNP V5QR23 V5QR23_BETVV 1 171 SEQADV 7Z1U ALA A 78 UNP V5QR23 CYS 86 ENGINEERED MUTATION SEQADV 7Z1U ALA B 78 UNP V5QR23 CYS 86 ENGINEERED MUTATION SEQRES 1 A 171 MET SER PHE THR ASN VAL ASN TYR PRO ALA SER ASP GLY SEQRES 2 A 171 THR VAL ILE PHE THR GLU GLU GLN GLU ALA LEU VAL VAL SEQRES 3 A 171 GLN SER TRP ASN VAL MET LYS LYS ASN SER ALA GLU LEU SEQRES 4 A 171 GLY LEU LYS LEU PHE LEU LYS ILE PHE GLU ILE ALA PRO SEQRES 5 A 171 THR ALA LYS LYS MET PHE SER PHE VAL ARG ASP SER ASP SEQRES 6 A 171 VAL PRO LEU GLU GLN ASN GLN LYS LEU LYS GLY HIS ALA SEQRES 7 A 171 MET SER VAL PHE VAL MET THR ALA LYS SER ALA ALA GLN SEQRES 8 A 171 LEU ARG LYS ALA GLY LYS VAL THR PHE GLY GLU SER SER SEQRES 9 A 171 LEU LYS HIS MET GLY SER VAL HIS LEU LYS TYR GLY VAL SEQRES 10 A 171 VAL ASP GLU HIS PHE GLU VAL THR ARG PHE ALA LEU LEU SEQRES 11 A 171 GLU THR ILE LYS GLU ALA VAL PRO GLU MET TRP SER PRO SEQRES 12 A 171 GLU MET LYS ASN ALA TRP ALA GLU ALA PHE ASN HIS LEU SEQRES 13 A 171 VAL ALA ALA ILE LYS ALA GLU MET GLN ARG LEU SER THR SEQRES 14 A 171 GLN PRO SEQRES 1 B 171 MET SER PHE THR ASN VAL ASN TYR PRO ALA SER ASP GLY SEQRES 2 B 171 THR VAL ILE PHE THR GLU GLU GLN GLU ALA LEU VAL VAL SEQRES 3 B 171 GLN SER TRP ASN VAL MET LYS LYS ASN SER ALA GLU LEU SEQRES 4 B 171 GLY LEU LYS LEU PHE LEU LYS ILE PHE GLU ILE ALA PRO SEQRES 5 B 171 THR ALA LYS LYS MET PHE SER PHE VAL ARG ASP SER ASP SEQRES 6 B 171 VAL PRO LEU GLU GLN ASN GLN LYS LEU LYS GLY HIS ALA SEQRES 7 B 171 MET SER VAL PHE VAL MET THR ALA LYS SER ALA ALA GLN SEQRES 8 B 171 LEU ARG LYS ALA GLY LYS VAL THR PHE GLY GLU SER SER SEQRES 9 B 171 LEU LYS HIS MET GLY SER VAL HIS LEU LYS TYR GLY VAL SEQRES 10 B 171 VAL ASP GLU HIS PHE GLU VAL THR ARG PHE ALA LEU LEU SEQRES 11 B 171 GLU THR ILE LYS GLU ALA VAL PRO GLU MET TRP SER PRO SEQRES 12 B 171 GLU MET LYS ASN ALA TRP ALA GLU ALA PHE ASN HIS LEU SEQRES 13 B 171 VAL ALA ALA ILE LYS ALA GLU MET GLN ARG LEU SER THR SEQRES 14 B 171 GLN PRO HET HEM A 201 43 HET HEM B 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *10(H2 O) HELIX 1 AA1 THR A 10 LYS A 25 1 16 HELIX 2 AA2 ASN A 27 ALA A 43 1 17 HELIX 3 AA3 PRO A 44 PHE A 50 5 7 HELIX 4 AA4 ASN A 63 ALA A 87 1 25 HELIX 5 AA5 SER A 96 TYR A 107 1 12 HELIX 6 AA6 VAL A 110 GLU A 127 1 18 HELIX 7 AA7 GLU A 136 GLN A 157 1 22 HELIX 8 AA8 THR B 10 LYS B 25 1 16 HELIX 9 AA9 ASN B 27 ALA B 43 1 17 HELIX 10 AB1 PRO B 44 PHE B 50 5 7 HELIX 11 AB2 GLN B 64 ALA B 87 1 24 HELIX 12 AB3 LEU B 97 TYR B 107 1 11 HELIX 13 AB4 VAL B 110 GLU B 127 1 18 HELIX 14 AB5 SER B 134 GLN B 157 1 24 LINK NE2 HIS A 69 FE HEM A 201 1555 1555 2.60 LINK NE2 HIS A 104 FE HEM A 201 1555 1555 2.65 LINK NE2 HIS B 69 FE HEM B 201 1555 1555 2.59 LINK NE2 HIS B 104 FE HEM B 201 1555 1555 2.66 CRYST1 36.850 73.920 62.830 90.00 105.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027137 0.000000 0.007297 0.00000 SCALE2 0.000000 0.013528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016481 0.00000