HEADER METAL BINDING PROTEIN 02-MAR-22 7Z3F TITLE CRYSTAL STRUCTURE OF THE CUPREDOXIN ACOP FROM ACIDITHIOBACILLUS TITLE 2 FERROOXIDANS, OXIDIZED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACOP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_TAXID: 920; SOURCE 4 GENE: DN052_11965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CUPREDOXIN, COPPER-BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.LEONE,G.SCIARA,M.ILBERT REVDAT 2 28-FEB-24 7Z3F 1 JRNL REVDAT 1 13-SEP-23 7Z3F 0 JRNL AUTH M.ROGER,P.LEONE,N.J.BLACKBURN,S.HORRELL,T.M.CHICANO,F.BIASO, JRNL AUTH 2 M.T.GIUDICI-ORTICONI,L.A.ABRIATA,G.L.HURA,M.A.HOUGH, JRNL AUTH 3 G.SCIARA,M.ILBERT JRNL TITL BEYOND THE COUPLED DISTORTION MODEL: STRUCTURAL ANALYSIS OF JRNL TITL 2 THE SINGLE DOMAIN CUPREDOXIN ACOP, A GREEN MONONUCLEAR JRNL TITL 3 COPPER CENTRE WITH ORIGINAL FEATURES. JRNL REF DALTON TRANS V. 53 1794 2024 JRNL REFN ESSN 1477-9234 JRNL PMID 38170898 JRNL DOI 10.1039/D3DT03372D REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2396 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2093 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.511 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2190 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1962 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2970 ; 1.689 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4524 ; 1.402 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 6.854 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;32.156 ;23.063 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 319 ;11.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.944 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2518 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 536 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 43 180 B 43 180 4002 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2827 -25.2112 -9.5791 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0351 REMARK 3 T33: 0.0055 T12: 0.0219 REMARK 3 T13: 0.0065 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.9226 L22: 0.6522 REMARK 3 L33: 1.7505 L12: 0.2628 REMARK 3 L13: -0.3408 L23: -0.1116 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.0415 S13: -0.0266 REMARK 3 S21: 0.0146 S22: 0.0202 S23: -0.0315 REMARK 3 S31: 0.0360 S32: 0.1100 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5253 -38.5016 -12.3060 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0939 REMARK 3 T33: 0.0479 T12: -0.0419 REMARK 3 T13: -0.0380 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.8317 L22: 2.5552 REMARK 3 L33: 1.4061 L12: -0.2291 REMARK 3 L13: 0.0119 L23: -0.4988 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.0624 S13: -0.1090 REMARK 3 S21: -0.2576 S22: 0.0109 S23: 0.2997 REMARK 3 S31: 0.2498 S32: -0.2436 S33: -0.0389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7Z3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292121291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7Z3B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM POTASSIUM ACETATE, 10MM REMARK 280 POTASSIUM CHLORIDE, 50MM MES, 50MM TRIS, 50MM HEPES, 34-44% REMARK 280 PEG3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.45100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.73850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.73850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.22550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.73850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.73850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.67650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.73850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.73850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.22550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.73850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.73850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.67650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.45100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 13 REMARK 465 SER A 14 REMARK 465 TYR A 15 REMARK 465 TYR A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 LEU A 23 REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 THR A 26 REMARK 465 SER A 27 REMARK 465 LEU A 28 REMARK 465 TYR A 29 REMARK 465 LYS A 30 REMARK 465 LYS A 31 REMARK 465 ALA A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 ASN A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 GLN A 39 REMARK 465 VAL A 40 REMARK 465 ILE A 41 REMARK 465 ASN A 42 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 MET B 13 REMARK 465 SER B 14 REMARK 465 TYR B 15 REMARK 465 TYR B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 LEU B 23 REMARK 465 GLU B 24 REMARK 465 SER B 25 REMARK 465 THR B 26 REMARK 465 SER B 27 REMARK 465 LEU B 28 REMARK 465 TYR B 29 REMARK 465 LYS B 30 REMARK 465 LYS B 31 REMARK 465 ALA B 32 REMARK 465 GLY B 33 REMARK 465 SER B 34 REMARK 465 ASN B 35 REMARK 465 PRO B 36 REMARK 465 SER B 37 REMARK 465 GLY B 38 REMARK 465 GLN B 39 REMARK 465 VAL B 40 REMARK 465 ILE B 41 REMARK 465 ASN B 42 REMARK 465 SER B 95 REMARK 465 ARG B 96 REMARK 465 ASP B 97 REMARK 465 ASN B 98 REMARK 465 GLY B 99 REMARK 465 PHE B 100 REMARK 465 PRO B 101 REMARK 465 LYS B 102 REMARK 465 SER B 103 REMARK 465 GLN B 104 REMARK 465 ALA B 105 REMARK 465 ILE B 106 REMARK 465 GLN B 181 REMARK 465 GLY B 182 REMARK 465 SER B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 317 O HOH B 344 2.12 REMARK 500 O1 GOL A 207 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 92 95.64 66.98 REMARK 500 SER B 77 123.35 -35.90 REMARK 500 THR B 92 97.10 71.85 REMARK 500 SER B 122 129.45 -170.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 51 OE1 REMARK 620 2 GLU A 51 OE2 45.2 REMARK 620 3 HIS A 85 O 88.1 107.3 REMARK 620 4 VAL A 134 O 169.8 126.2 90.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 ND1 REMARK 620 2 CYS A 159 SG 144.6 REMARK 620 3 HIS A 166 ND1 97.7 104.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 51 OE1 REMARK 620 2 GLU B 51 OE2 45.2 REMARK 620 3 HIS B 85 O 84.7 103.3 REMARK 620 4 VAL B 134 O 163.7 122.1 90.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 85 ND1 REMARK 620 2 CYS B 159 SG 147.7 REMARK 620 3 HIS B 166 ND1 96.2 106.3 REMARK 620 N 1 2 DBREF1 7Z3F A 35 183 UNP A0A2W1KFF4_ACIFR DBREF2 7Z3F A A0A2W1KFF4 35 183 DBREF1 7Z3F B 35 183 UNP A0A2W1KFF4_ACIFR DBREF2 7Z3F B A0A2W1KFF4 35 183 SEQADV 7Z3F MET A 13 UNP A0A2W1KFF INITIATING METHIONINE SEQADV 7Z3F SER A 14 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F TYR A 15 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F TYR A 16 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS A 17 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS A 18 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS A 19 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS A 20 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS A 21 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS A 22 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LEU A 23 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F GLU A 24 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F SER A 25 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F THR A 26 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F SER A 27 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LEU A 28 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F TYR A 29 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LYS A 30 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LYS A 31 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F ALA A 32 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F GLY A 33 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F SER A 34 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F MET B 13 UNP A0A2W1KFF INITIATING METHIONINE SEQADV 7Z3F SER B 14 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F TYR B 15 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F TYR B 16 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS B 17 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS B 18 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS B 19 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS B 20 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS B 21 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F HIS B 22 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LEU B 23 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F GLU B 24 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F SER B 25 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F THR B 26 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F SER B 27 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LEU B 28 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F TYR B 29 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LYS B 30 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F LYS B 31 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F ALA B 32 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F GLY B 33 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3F SER B 34 UNP A0A2W1KFF EXPRESSION TAG SEQRES 1 A 171 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 171 THR SER LEU TYR LYS LYS ALA GLY SER ASN PRO SER GLY SEQRES 3 A 171 GLN VAL ILE ASN GLY VAL HIS HIS TYR THR ILE ASP GLU SEQRES 4 A 171 PHE ASN TYR TYR TYR LYS PRO ASP ARG MET THR TRP HIS SEQRES 5 A 171 VAL GLY GLU LYS VAL GLU LEU THR ILE ASP ASN ARG SER SEQRES 6 A 171 GLN SER ALA PRO PRO ILE ALA HIS GLN PHE SER ILE GLY SEQRES 7 A 171 ARG THR LEU VAL SER ARG ASP ASN GLY PHE PRO LYS SER SEQRES 8 A 171 GLN ALA ILE ALA VAL GLY TRP LYS ASP ASN PHE PHE ASP SEQRES 9 A 171 GLY VAL PRO ILE THR SER GLY GLY GLN THR GLY PRO VAL SEQRES 10 A 171 PRO ALA PHE SER VAL SER LEU ASN GLY GLY GLN LYS TYR SEQRES 11 A 171 THR PHE SER PHE VAL VAL PRO ASN LYS PRO GLY LYS TRP SEQRES 12 A 171 GLU TYR GLY CYS PHE LEU GLN THR GLY GLN HIS PHE MET SEQRES 13 A 171 ASN GLY MET HIS GLY ILE LEU ASP ILE LEU PRO ALA GLN SEQRES 14 A 171 GLY SER SEQRES 1 B 171 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 B 171 THR SER LEU TYR LYS LYS ALA GLY SER ASN PRO SER GLY SEQRES 3 B 171 GLN VAL ILE ASN GLY VAL HIS HIS TYR THR ILE ASP GLU SEQRES 4 B 171 PHE ASN TYR TYR TYR LYS PRO ASP ARG MET THR TRP HIS SEQRES 5 B 171 VAL GLY GLU LYS VAL GLU LEU THR ILE ASP ASN ARG SER SEQRES 6 B 171 GLN SER ALA PRO PRO ILE ALA HIS GLN PHE SER ILE GLY SEQRES 7 B 171 ARG THR LEU VAL SER ARG ASP ASN GLY PHE PRO LYS SER SEQRES 8 B 171 GLN ALA ILE ALA VAL GLY TRP LYS ASP ASN PHE PHE ASP SEQRES 9 B 171 GLY VAL PRO ILE THR SER GLY GLY GLN THR GLY PRO VAL SEQRES 10 B 171 PRO ALA PHE SER VAL SER LEU ASN GLY GLY GLN LYS TYR SEQRES 11 B 171 THR PHE SER PHE VAL VAL PRO ASN LYS PRO GLY LYS TRP SEQRES 12 B 171 GLU TYR GLY CYS PHE LEU GLN THR GLY GLN HIS PHE MET SEQRES 13 B 171 ASN GLY MET HIS GLY ILE LEU ASP ILE LEU PRO ALA GLN SEQRES 14 B 171 GLY SER HET CU A 201 1 HET ACT A 202 4 HET ACT A 203 4 HET NA A 204 1 HET CL A 205 1 HET GOL A 206 6 HET GOL A 207 6 HET CU B 201 1 HET ACT B 202 4 HET ACT B 203 4 HET NA B 204 1 HET CL B 205 1 HETNAM CU COPPER (II) ION HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CU 2(CU 2+) FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 6 NA 2(NA 1+) FORMUL 7 CL 2(CL 1-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 15 HOH *123(H2 O) HELIX 1 AA1 LEU A 161 THR A 163 5 3 HELIX 2 AA2 GLY A 164 ASN A 169 1 6 HELIX 3 AA3 LEU B 161 THR B 163 5 3 HELIX 4 AA4 GLY B 164 ASN B 169 1 6 SHEET 1 AA1 4 TYR A 55 LYS A 57 0 SHEET 2 AA1 4 HIS A 45 PHE A 52 -1 N ASP A 50 O LYS A 57 SHEET 3 AA1 4 LYS A 68 ASN A 75 1 O ASP A 74 N GLU A 51 SHEET 4 AA1 4 LYS A 141 VAL A 147 -1 O PHE A 144 N LEU A 71 SHEET 1 AA2 5 ARG A 60 HIS A 64 0 SHEET 2 AA2 5 HIS A 172 LEU A 178 1 O LEU A 178 N TRP A 63 SHEET 3 AA2 5 GLY A 153 GLY A 158 -1 N TRP A 155 O LEU A 175 SHEET 4 AA2 5 HIS A 85 SER A 95 -1 N GLY A 90 O GLU A 156 SHEET 5 AA2 5 ALA A 107 ASN A 113 -1 O VAL A 108 N VAL A 94 SHEET 1 AA3 5 ARG A 60 HIS A 64 0 SHEET 2 AA3 5 HIS A 172 LEU A 178 1 O LEU A 178 N TRP A 63 SHEET 3 AA3 5 GLY A 153 GLY A 158 -1 N TRP A 155 O LEU A 175 SHEET 4 AA3 5 HIS A 85 SER A 95 -1 N GLY A 90 O GLU A 156 SHEET 5 AA3 5 VAL A 134 LEU A 136 -1 O VAL A 134 N PHE A 87 SHEET 1 AA4 2 PRO A 119 SER A 122 0 SHEET 2 AA4 2 GLN A 125 PRO A 128 -1 O GLN A 125 N SER A 122 SHEET 1 AA5 4 TYR B 55 LYS B 57 0 SHEET 2 AA5 4 VAL B 44 PHE B 52 -1 N ASP B 50 O LYS B 57 SHEET 3 AA5 4 LYS B 68 ASN B 75 1 O ASP B 74 N GLU B 51 SHEET 4 AA5 4 LYS B 141 VAL B 147 -1 O PHE B 146 N VAL B 69 SHEET 1 AA6 5 ARG B 60 HIS B 64 0 SHEET 2 AA6 5 HIS B 172 LEU B 178 1 O LEU B 178 N TRP B 63 SHEET 3 AA6 5 GLY B 153 GLY B 158 -1 N TRP B 155 O LEU B 175 SHEET 4 AA6 5 HIS B 85 LEU B 93 -1 N GLY B 90 O GLU B 156 SHEET 5 AA6 5 TRP B 110 ASN B 113 -1 O LYS B 111 N THR B 92 SHEET 1 AA7 5 ARG B 60 HIS B 64 0 SHEET 2 AA7 5 HIS B 172 LEU B 178 1 O LEU B 178 N TRP B 63 SHEET 3 AA7 5 GLY B 153 GLY B 158 -1 N TRP B 155 O LEU B 175 SHEET 4 AA7 5 HIS B 85 LEU B 93 -1 N GLY B 90 O GLU B 156 SHEET 5 AA7 5 VAL B 134 LEU B 136 -1 O VAL B 134 N PHE B 87 SHEET 1 AA8 2 ILE B 120 SER B 122 0 SHEET 2 AA8 2 GLN B 125 GLY B 127 -1 O GLY B 127 N ILE B 120 LINK OE1 GLU A 51 NA NA A 204 1555 1555 3.07 LINK OE2 GLU A 51 NA NA A 204 1555 1555 2.51 LINK ND1 HIS A 85 CU CU A 201 1555 1555 2.03 LINK O HIS A 85 NA NA A 204 1555 1555 2.77 LINK O VAL A 134 NA NA A 204 1555 1555 2.81 LINK SG CYS A 159 CU CU A 201 1555 1555 2.34 LINK ND1 HIS A 166 CU CU A 201 1555 1555 2.17 LINK OE1 GLU B 51 NA NA B 204 1555 1555 3.04 LINK OE2 GLU B 51 NA NA B 204 1555 1555 2.51 LINK ND1 HIS B 85 CU CU B 201 1555 1555 2.05 LINK O HIS B 85 NA NA B 204 1555 1555 2.87 LINK O VAL B 134 NA NA B 204 1555 1555 2.77 LINK SG CYS B 159 CU CU B 201 1555 1555 2.21 LINK ND1 HIS B 166 CU CU B 201 1555 1555 2.19 CISPEP 1 ASN A 53 TYR A 54 0 -2.12 CISPEP 2 LYS A 57 PRO A 58 0 -1.40 CISPEP 3 ALA A 80 PRO A 81 0 -4.37 CISPEP 4 ASN B 53 TYR B 54 0 -3.54 CISPEP 5 LYS B 57 PRO B 58 0 -7.57 CISPEP 6 ALA B 80 PRO B 81 0 5.49 CRYST1 73.477 73.477 112.902 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008857 0.00000