HEADER HYDROLASE 10-MAR-22 7Z64 TITLE A GH18 FROM HALOALKALIPHILIC BACTERIUM UNVEILS ENVIRONMENT-DEPENDENT TITLE 2 VARIATIONS IN THE CATALYTIC MACHINERY OF CHITINASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE, GH18 FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHITINIVIBRIO ALKALIPHILUS ACHT1; SOURCE 3 ORGANISM_TAXID: 1313304; SOURCE 4 GENE: CALK_0774; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHITINASE, CHITIN, CHITOOLIGOSACCHARIDES, SUBSTRATE ASSISTED KEYWDS 2 CATALYSIS., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MADHUPRAKASH,B.DALHUS,A.K.ROHR,B.BISSARO,G.VAAJE-KOLSTAD,M.SORLIE, AUTHOR 2 V.G.EIJSINK REVDAT 1 17-JAN-24 7Z64 0 JRNL AUTH J.MADHUPRAKASH,B.DALHUS,A.K.ROHR,B.BISSARO,G.VAAJE-KOLSTAD, JRNL AUTH 2 M.SORLIE,V.G.H.EIJSINK JRNL TITL A GH18 FROM HALOALKALIPHILIC BACTERIUM UNVEILS JRNL TITL 2 ENVIRONMENT-DEPENDENT VARIATIONS IN THE CATALYTIC MACHINERY JRNL TITL 3 OF CHITINASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 192382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 9653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1100.1180 - 4.0696 0.97 6204 342 0.1302 0.1513 REMARK 3 2 4.0696 - 3.2301 0.98 6070 348 0.1183 0.1366 REMARK 3 3 3.2301 - 2.8218 0.98 6167 310 0.1205 0.1419 REMARK 3 4 2.8218 - 2.5637 0.99 6148 320 0.1114 0.1287 REMARK 3 5 2.5637 - 2.3800 0.99 6127 339 0.1061 0.1179 REMARK 3 6 2.3800 - 2.2396 1.00 6209 298 0.1051 0.1197 REMARK 3 7 2.2396 - 2.1275 0.98 6073 318 0.1101 0.1289 REMARK 3 8 2.1275 - 2.0348 0.99 6133 310 0.1185 0.1255 REMARK 3 9 2.0348 - 1.9565 0.99 6138 319 0.1216 0.1391 REMARK 3 10 1.9565 - 1.8890 1.00 6132 302 0.1236 0.1457 REMARK 3 11 1.8890 - 1.8299 1.00 6172 321 0.1264 0.1533 REMARK 3 12 1.8299 - 1.7776 1.00 6136 341 0.1340 0.1609 REMARK 3 13 1.7776 - 1.7308 1.00 6139 334 0.1403 0.1728 REMARK 3 14 1.7308 - 1.6886 1.00 6183 300 0.1468 0.1651 REMARK 3 15 1.6886 - 1.6502 1.00 6084 344 0.1564 0.1661 REMARK 3 16 1.6502 - 1.6151 1.00 6154 342 0.1623 0.1781 REMARK 3 17 1.6151 - 1.5828 0.99 6145 307 0.1757 0.1868 REMARK 3 18 1.5828 - 1.5529 0.98 6027 314 0.1858 0.2214 REMARK 3 19 1.5529 - 1.5251 0.99 6066 353 0.1951 0.2043 REMARK 3 20 1.5251 - 1.4993 0.98 6061 307 0.2165 0.2384 REMARK 3 21 1.4993 - 1.4751 0.99 6103 316 0.2276 0.2243 REMARK 3 22 1.4751 - 1.4524 0.99 6114 319 0.2432 0.2587 REMARK 3 23 1.4524 - 1.4310 0.99 6079 313 0.2619 0.2802 REMARK 3 24 1.4310 - 1.4109 0.99 6110 302 0.2700 0.2764 REMARK 3 25 1.4109 - 1.3918 0.99 6098 341 0.2863 0.3142 REMARK 3 26 1.3918 - 1.3737 0.98 6011 344 0.3019 0.3077 REMARK 3 27 1.3737 - 1.3566 0.98 6002 342 0.3132 0.3310 REMARK 3 28 1.3566 - 1.3402 0.96 5954 315 0.3271 0.3329 REMARK 3 29 1.3402 - 1.3246 0.96 5897 289 0.3373 0.3112 REMARK 3 30 1.3246 - 1.3100 0.94 5793 303 0.3463 0.3764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4739 REMARK 3 ANGLE : 1.094 6480 REMARK 3 CHIRALITY : 0.075 716 REMARK 3 PLANARITY : 0.007 824 REMARK 3 DIHEDRAL : 14.719 1650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8200 2.8064 35.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.0993 REMARK 3 T33: 0.1081 T12: -0.0391 REMARK 3 T13: 0.0176 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.7779 L22: 1.2432 REMARK 3 L33: 1.2587 L12: -0.3908 REMARK 3 L13: -0.6386 L23: 0.1942 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.0018 S13: -0.1018 REMARK 3 S21: 0.0879 S22: -0.0005 S23: 0.1272 REMARK 3 S31: 0.1790 S32: -0.1388 S33: 0.0645 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9304 13.1268 48.4957 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.1224 REMARK 3 T33: 0.1147 T12: -0.0365 REMARK 3 T13: 0.0365 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.3387 L22: 3.6227 REMARK 3 L33: 1.5093 L12: -1.6314 REMARK 3 L13: -0.1916 L23: 0.2951 REMARK 3 S TENSOR REMARK 3 S11: -0.0626 S12: -0.1006 S13: -0.0332 REMARK 3 S21: 0.2869 S22: 0.0030 S23: 0.1478 REMARK 3 S31: 0.1068 S32: -0.1220 S33: 0.0589 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1687 19.3989 51.3657 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.1059 REMARK 3 T33: 0.1019 T12: -0.0193 REMARK 3 T13: 0.0151 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 9.4874 L22: 5.7249 REMARK 3 L33: 0.8489 L12: -7.3526 REMARK 3 L13: -0.7875 L23: 0.7490 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.2236 S13: 0.0840 REMARK 3 S21: 0.3931 S22: 0.0573 S23: -0.0409 REMARK 3 S31: -0.0540 S32: -0.0424 S33: -0.0225 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5246 17.2798 28.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.0795 REMARK 3 T33: 0.0998 T12: -0.0049 REMARK 3 T13: 0.0060 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.5788 L22: 0.5740 REMARK 3 L33: 1.4615 L12: 0.0465 REMARK 3 L13: -0.3096 L23: 0.0688 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.0192 S13: 0.0460 REMARK 3 S21: 0.0640 S22: -0.0046 S23: 0.0073 REMARK 3 S31: -0.1143 S32: -0.0205 S33: -0.0332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9387 44.5182 1.6549 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0716 REMARK 3 T33: 0.1221 T12: 0.0096 REMARK 3 T13: -0.0208 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.9760 L22: 0.6958 REMARK 3 L33: 4.4783 L12: -0.1210 REMARK 3 L13: -1.7171 L23: -0.2258 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: -0.0236 S13: 0.1278 REMARK 3 S21: 0.0177 S22: 0.0016 S23: 0.0140 REMARK 3 S31: -0.0742 S32: 0.0514 S33: -0.0473 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0167 46.2694 6.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0936 REMARK 3 T33: 0.1264 T12: 0.0058 REMARK 3 T13: -0.0107 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.7096 L22: 2.4567 REMARK 3 L33: 2.8990 L12: 0.0241 REMARK 3 L13: -0.1885 L23: -1.7923 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0796 S13: 0.1253 REMARK 3 S21: 0.1585 S22: -0.0160 S23: -0.0357 REMARK 3 S31: -0.1789 S32: 0.0371 S33: 0.0045 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2819 35.4554 8.1210 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.1161 REMARK 3 T33: 0.1145 T12: -0.0075 REMARK 3 T13: -0.0114 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.6701 L22: 3.2858 REMARK 3 L33: 1.0049 L12: -0.2726 REMARK 3 L13: 0.0066 L23: -1.3297 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.0615 S13: 0.0473 REMARK 3 S21: 0.1252 S22: 0.0589 S23: 0.1681 REMARK 3 S31: -0.0225 S32: -0.1166 S33: -0.0308 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2477 29.8959 2.4411 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.1116 REMARK 3 T33: 0.1484 T12: -0.0335 REMARK 3 T13: -0.0092 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.4703 L22: 7.1871 REMARK 3 L33: 5.4763 L12: -0.6038 REMARK 3 L13: 0.4389 L23: -5.6105 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.0303 S13: -0.0077 REMARK 3 S21: -0.0043 S22: 0.0746 S23: 0.3359 REMARK 3 S31: 0.0558 S32: -0.1818 S33: -0.0581 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3539 30.4297 -5.5896 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0790 REMARK 3 T33: 0.0890 T12: 0.0035 REMARK 3 T13: -0.0101 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.7199 L22: 0.5319 REMARK 3 L33: 0.9407 L12: 0.1941 REMARK 3 L13: -0.3817 L23: -0.1093 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.0153 S13: -0.0373 REMARK 3 S21: -0.0623 S22: -0.0061 S23: -0.0139 REMARK 3 S31: 0.0916 S32: 0.0081 S33: 0.0509 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Z64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292121539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 192384 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 100.118 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NATIVE STRUCTURE (PDB DEPOSIT 1292121539) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M KBR, 30% W/V PEG-MME 2K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.21000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 283 O HOH A 401 1.55 REMARK 500 O HOH B 474 O HOH B 561 2.01 REMARK 500 OE1 GLU B 36 O HOH B 401 2.02 REMARK 500 O HOH A 438 O HOH A 712 2.03 REMARK 500 O HOH A 695 O HOH A 699 2.04 REMARK 500 O HOH A 651 O HOH A 691 2.06 REMARK 500 NE2 GLN A 283 O HOH A 401 2.08 REMARK 500 O HOH B 576 O HOH B 721 2.10 REMARK 500 O HOH A 599 O HOH A 697 2.10 REMARK 500 O HOH A 484 O HOH A 534 2.11 REMARK 500 O HOH B 549 O HOH B 663 2.12 REMARK 500 O HOH B 774 O HOH B 792 2.12 REMARK 500 O HOH A 706 O HOH A 715 2.12 REMARK 500 O HOH B 718 O HOH B 746 2.14 REMARK 500 O HOH B 686 O HOH B 716 2.16 REMARK 500 O HOH B 585 O HOH B 683 2.16 REMARK 500 O HOH A 713 O HOH A 721 2.17 REMARK 500 O HOH A 640 O HOH A 662 2.17 REMARK 500 O HOH A 437 O HOH A 542 2.17 REMARK 500 O HOH B 774 O HOH B 821 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 609 O HOH B 757 2555 1.88 REMARK 500 O HOH A 411 O HOH A 654 2646 2.03 REMARK 500 O HOH B 448 O HOH B 744 2545 2.03 REMARK 500 O HOH A 654 O HOH A 683 2656 2.07 REMARK 500 O HOH A 521 O HOH A 610 2656 2.07 REMARK 500 O HOH A 758 O HOH A 761 2646 2.09 REMARK 500 O HOH A 419 O HOH A 481 2656 2.10 REMARK 500 O HOH A 437 O HOH A 685 2656 2.12 REMARK 500 O HOH A 675 O HOH B 590 2645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 189 -166.48 -100.16 REMARK 500 TYR A 213 -128.11 51.84 REMARK 500 ALA A 236 68.96 -166.48 REMARK 500 TYR B 213 -127.95 50.89 REMARK 500 ALA B 236 65.77 -164.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 839 DISTANCE = 6.46 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 187 O REMARK 620 2 TRP A 189 O 86.1 REMARK 620 3 ASP A 194 OD2 90.2 88.0 REMARK 620 4 SER A 196 OG 102.6 167.2 82.7 REMARK 620 5 HOH A 445 O 166.0 84.5 79.1 85.1 REMARK 620 6 HOH A 690 O 81.6 107.0 162.3 83.8 111.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 187 O REMARK 620 2 TRP B 189 O 86.7 REMARK 620 3 ASP B 194 OD2 92.6 83.0 REMARK 620 4 SER B 196 OG 105.6 161.8 83.0 REMARK 620 5 HOH B 473 O 167.9 84.8 77.9 80.9 REMARK 620 N 1 2 3 4 DBREF 7Z64 A 22 298 UNP U7D706 U7D706_9BACT 22 298 DBREF 7Z64 B 22 298 UNP U7D706 U7D706_9BACT 22 298 SEQADV 7Z64 MET A 0 UNP U7D706 INITIATING METHIONINE SEQADV 7Z64 GLN A 148 UNP U7D706 GLU 148 CONFLICT SEQADV 7Z64 MET B 0 UNP U7D706 INITIATING METHIONINE SEQADV 7Z64 GLN B 148 UNP U7D706 GLU 148 CONFLICT SEQRES 1 A 278 MET VAL ILE SER TRP ILE PRO PRO TYR ASN VAL PRO VAL SEQRES 2 A 278 SER PHE GLU ASN LEU GLU LYS SER PHE ASP GLY TYR GLY SEQRES 3 A 278 PRO ALA ASP GLY LEU SER HIS ILE ALA PRO GLN PHE TRP SEQRES 4 A 278 VAL PRO ASP GLY ASN GLY GLY ILE SER TYR VAL THR ARG SEQRES 5 A 278 ASP ASP TYR SER MET ASP TYR MET ASN ASP ASP SER VAL SEQRES 6 A 278 LYS VAL ILE ARG ASP TRP GLY ASN GLN TYR GLY ILE LYS SEQRES 7 A 278 THR MET LEU CYS ILE TYR ASN GLY GLU HIS GLY TRP ASP SEQRES 8 A 278 TRP SER LEU VAL SER THR SER ILE SER ALA ALA ASN ARG SEQRES 9 A 278 GLN SER PHE VAL ASP ALA ILE VAL THR GLU MET LYS ARG SEQRES 10 A 278 LEU ASN LEU HIS GLY VAL GLU VAL ASP LEU GLN GLY PRO SEQRES 11 A 278 ASN ALA ASP SER PRO THR ASP THR GLU ASN PHE LEU LEU SEQRES 12 A 278 PHE MET GLU LYS LEU SER ASP THR LEU SER SER LEU GLY SEQRES 13 A 278 LYS ASP LEU THR ILE ALA THR PHE ALA SER ARG GLU TRP SEQRES 14 A 278 ASP HIS ILE PRO ASP ALA SER HIS TRP PRO GLU LEU LEU SEQRES 15 A 278 PRO LEU VAL ASP GLY ILE THR SER MET GLY TYR GLU GLU SEQRES 16 A 278 THR GLY ILE ASN ALA THR GLY ASP LEU SER TYR ALA GLY SEQRES 17 A 278 GLN LYS SER MET ALA ALA GLY ALA PRO GLU LYS LEU MET SEQRES 18 A 278 LEU GLY MET PRO ASP HIS LEU ASP SER TRP GLN GLY SER SEQRES 19 A 278 SER ALA LEU GLN GLN VAL GLU TRP ALA GLN ASP ASN GLY SEQRES 20 A 278 VAL GLY VAL ALA LEU TRP ASP MET GLN LEU ARG ASN GLU SEQRES 21 A 278 ALA TRP GLN ARG ARG ASP ILE TRP LYS ALA LEU SER GLU SEQRES 22 A 278 ILE ARG GLY PRO LEU SEQRES 1 B 278 MET VAL ILE SER TRP ILE PRO PRO TYR ASN VAL PRO VAL SEQRES 2 B 278 SER PHE GLU ASN LEU GLU LYS SER PHE ASP GLY TYR GLY SEQRES 3 B 278 PRO ALA ASP GLY LEU SER HIS ILE ALA PRO GLN PHE TRP SEQRES 4 B 278 VAL PRO ASP GLY ASN GLY GLY ILE SER TYR VAL THR ARG SEQRES 5 B 278 ASP ASP TYR SER MET ASP TYR MET ASN ASP ASP SER VAL SEQRES 6 B 278 LYS VAL ILE ARG ASP TRP GLY ASN GLN TYR GLY ILE LYS SEQRES 7 B 278 THR MET LEU CYS ILE TYR ASN GLY GLU HIS GLY TRP ASP SEQRES 8 B 278 TRP SER LEU VAL SER THR SER ILE SER ALA ALA ASN ARG SEQRES 9 B 278 GLN SER PHE VAL ASP ALA ILE VAL THR GLU MET LYS ARG SEQRES 10 B 278 LEU ASN LEU HIS GLY VAL GLU VAL ASP LEU GLN GLY PRO SEQRES 11 B 278 ASN ALA ASP SER PRO THR ASP THR GLU ASN PHE LEU LEU SEQRES 12 B 278 PHE MET GLU LYS LEU SER ASP THR LEU SER SER LEU GLY SEQRES 13 B 278 LYS ASP LEU THR ILE ALA THR PHE ALA SER ARG GLU TRP SEQRES 14 B 278 ASP HIS ILE PRO ASP ALA SER HIS TRP PRO GLU LEU LEU SEQRES 15 B 278 PRO LEU VAL ASP GLY ILE THR SER MET GLY TYR GLU GLU SEQRES 16 B 278 THR GLY ILE ASN ALA THR GLY ASP LEU SER TYR ALA GLY SEQRES 17 B 278 GLN LYS SER MET ALA ALA GLY ALA PRO GLU LYS LEU MET SEQRES 18 B 278 LEU GLY MET PRO ASP HIS LEU ASP SER TRP GLN GLY SER SEQRES 19 B 278 SER ALA LEU GLN GLN VAL GLU TRP ALA GLN ASP ASN GLY SEQRES 20 B 278 VAL GLY VAL ALA LEU TRP ASP MET GLN LEU ARG ASN GLU SEQRES 21 B 278 ALA TRP GLN ARG ARG ASP ILE TRP LYS ALA LEU SER GLU SEQRES 22 B 278 ILE ARG GLY PRO LEU HET NAG C 1 26 HET NAG C 2 25 HET NAG C 3 25 HET NAG C 4 25 HET NAG C 5 25 HET NAG C 6 25 HET NAG D 1 26 HET NAG D 2 25 HET NAG D 3 25 HET NAG D 4 25 HET NAG D 5 25 HET NAG D 6 25 HET EDO A 301 8 HET EDO A 302 8 HET EDO A 303 8 HET NA A 304 1 HET EDO B 301 8 HET EDO B 302 8 HET EDO B 303 8 HET NA B 304 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 8 NA 2(NA 1+) FORMUL 13 HOH *848(H2 O) HELIX 1 AA1 ASN A 30 GLU A 39 1 10 HELIX 2 AA2 GLY A 46 LEU A 51 1 6 HELIX 3 AA3 SER A 76 MET A 80 5 5 HELIX 4 AA4 ASN A 81 GLN A 94 1 14 HELIX 5 AA5 ASP A 111 ILE A 119 1 9 HELIX 6 AA6 ASN A 123 LEU A 138 1 16 HELIX 7 AA7 SER A 154 LEU A 175 1 22 HELIX 8 AA8 ASP A 194 SER A 196 5 3 HELIX 9 AA9 HIS A 197 LEU A 202 1 6 HELIX 10 AB1 PRO A 203 VAL A 205 5 3 HELIX 11 AB2 GLY A 212 THR A 216 5 5 HELIX 12 AB3 THR A 221 LEU A 224 5 4 HELIX 13 AB4 SER A 225 ALA A 233 1 9 HELIX 14 AB5 ALA A 236 GLU A 238 5 3 HELIX 15 AB6 ALA A 256 GLY A 267 1 12 HELIX 16 AB7 ASN A 279 GLN A 283 5 5 HELIX 17 AB8 ARG A 284 GLY A 296 1 13 HELIX 18 AB9 ASN B 30 GLU B 39 1 10 HELIX 19 AC1 GLY B 46 LEU B 51 1 6 HELIX 20 AC2 SER B 76 MET B 80 5 5 HELIX 21 AC3 ASN B 81 GLN B 94 1 14 HELIX 22 AC4 ASP B 111 THR B 117 1 7 HELIX 23 AC5 ASN B 123 LEU B 138 1 16 HELIX 24 AC6 SER B 154 LEU B 175 1 22 HELIX 25 AC7 ASP B 194 SER B 196 5 3 HELIX 26 AC8 HIS B 197 LEU B 202 1 6 HELIX 27 AC9 PRO B 203 VAL B 205 5 3 HELIX 28 AD1 GLY B 212 THR B 216 5 5 HELIX 29 AD2 THR B 221 LEU B 224 5 4 HELIX 30 AD3 SER B 225 ALA B 233 1 9 HELIX 31 AD4 ALA B 236 GLU B 238 5 3 HELIX 32 AD5 ALA B 256 ASN B 266 1 11 HELIX 33 AD6 ASN B 279 GLN B 283 5 5 HELIX 34 AD7 ARG B 284 GLY B 296 1 13 SHEET 1 AA1 9 VAL A 22 ILE A 26 0 SHEET 2 AA1 9 HIS A 53 PRO A 56 1 O ALA A 55 N SER A 24 SHEET 3 AA1 9 LYS A 98 TYR A 104 1 O MET A 100 N ILE A 54 SHEET 4 AA1 9 GLY A 142 ASP A 146 1 O ASP A 146 N ILE A 103 SHEET 5 AA1 9 ASP A 178 THR A 183 1 O THR A 180 N VAL A 145 SHEET 6 AA1 9 GLY A 207 SER A 210 1 O THR A 209 N ILE A 181 SHEET 7 AA1 9 LEU A 240 PRO A 245 1 O MET A 241 N SER A 210 SHEET 8 AA1 9 GLY A 269 TRP A 273 1 O GLY A 269 N LEU A 240 SHEET 9 AA1 9 VAL A 22 ILE A 26 1 N ILE A 23 O LEU A 272 SHEET 1 AA2 2 TRP A 59 PRO A 61 0 SHEET 2 AA2 2 ILE A 67 TYR A 69 -1 O SER A 68 N VAL A 60 SHEET 1 AA3 2 SER A 250 TRP A 251 0 SHEET 2 AA3 2 SER A 254 SER A 255 -1 O SER A 254 N TRP A 251 SHEET 1 AA410 ILE B 67 TYR B 69 0 SHEET 2 AA410 HIS B 53 PRO B 61 -1 N VAL B 60 O SER B 68 SHEET 3 AA410 LYS B 98 TYR B 104 1 O MET B 100 N ILE B 54 SHEET 4 AA410 GLY B 142 ASP B 146 1 O ASP B 146 N ILE B 103 SHEET 5 AA410 ASP B 178 THR B 183 1 O THR B 180 N VAL B 145 SHEET 6 AA410 GLY B 207 SER B 210 1 O THR B 209 N THR B 183 SHEET 7 AA410 LEU B 240 PRO B 245 1 O MET B 241 N SER B 210 SHEET 8 AA410 GLY B 269 TRP B 273 1 O GLY B 269 N LEU B 240 SHEET 9 AA410 VAL B 22 ILE B 26 1 N ILE B 23 O LEU B 272 SHEET 10 AA410 HIS B 53 PRO B 61 1 O GLN B 57 N ILE B 26 SHEET 1 AA5 2 SER B 250 TRP B 251 0 SHEET 2 AA5 2 SER B 254 SER B 255 -1 O SER B 254 N TRP B 251 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.42 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.44 LINK O4 NAG C 4 C1 NAG C 5 1555 1555 1.41 LINK O4 NAG C 5 C1 NAG C 6 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 NAG D 3 1555 1555 1.43 LINK O4 NAG D 3 C1 NAG D 4 1555 1555 1.45 LINK O4 NAG D 4 C1 NAG D 5 1555 1555 1.42 LINK O4 NAG D 5 C1 NAG D 6 1555 1555 1.43 LINK O ARG A 187 NA NA A 304 1555 1555 2.63 LINK O TRP A 189 NA NA A 304 1555 1555 2.60 LINK OD2 ASP A 194 NA NA A 304 1555 1555 2.73 LINK OG SER A 196 NA NA A 304 1555 1555 3.16 LINK NA NA A 304 O HOH A 445 1555 1555 2.68 LINK NA NA A 304 O HOH A 690 1555 1555 2.60 LINK O ARG B 187 NA NA B 304 1555 1555 2.64 LINK O TRP B 189 NA NA B 304 1555 1555 2.55 LINK OD2 ASP B 194 NA NA B 304 1555 1555 2.68 LINK OG SER B 196 NA NA B 304 1555 1555 3.20 LINK NA NA B 304 O HOH B 473 1555 1555 2.67 CISPEP 1 ILE A 192 PRO A 193 0 -12.20 CISPEP 2 TRP A 273 ASP A 274 0 -0.01 CISPEP 3 ILE B 192 PRO B 193 0 -14.05 CISPEP 4 TRP B 273 ASP B 274 0 -1.10 CRYST1 65.970 62.420 102.650 90.00 102.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015158 0.000000 0.003431 0.00000 SCALE2 0.000000 0.016021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009988 0.00000