HEADER TRANSFERASE 14-MAR-22 7Z6U
TITLE PIM1 IN COMPLEX WITH (E)-4-((6-AMINO-2-OXOINDOLIN-3-YLIDENE)METHYL)
TITLE 2 BENZOIC ACID AND PIMTIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ISOFORM 1 OF SERINE/THREONINE-PROTEIN KINASE PIM-1;
COMPND 3 CHAIN: A;
COMPND 4 EC: 2.7.11.1;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: PIMTIDE;
COMPND 9 CHAIN: D;
COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PIM1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLIC-SGC;
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 12 ORGANISM_TAXID: 32630
KEYWDS SERINE KINASE, KINASE, COMPLEX, PIM1, PIM, PIM-1, INHIBITOR,
KEYWDS 2 TUMORIGENISIS, CANCER, PIMTIDE, PROTO ONCOGEN, ATP, PHOSPHORYLATION,
KEYWDS 3 APOPTOSIS, CELL CYCLE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.M.M.HOCHBAN,A.HEINE,W.E.DIEDERICH
REVDAT 3 23-OCT-24 7Z6U 1 REMARK
REVDAT 2 07-FEB-24 7Z6U 1 REMARK
REVDAT 1 01-FEB-23 7Z6U 0
JRNL AUTH L.HEYDER,P.M.M.HOCHBAN,C.TAYLOR,F.CHEVILLARD,C.SIEFKER,
JRNL AUTH 2 C.IKING,H.BORCHARDT,A.AIGNER,G.KLEBE,A.HEINE,P.KOLB,
JRNL AUTH 3 W.E.DIEDERICH
JRNL TITL POSE, DUPLICATE, THEN ELABORATE: STEPS TOWARDS INCREASED
JRNL TITL 2 AFFINITY FOR INHIBITORS TARGETING THE SPECIFICITY SURFACE OF
JRNL TITL 3 THE PIM-1 KINASE.
JRNL REF EUR.J.MED.CHEM. V. 245 14914 2023
JRNL REFN ISSN 0223-5234
JRNL PMID 36410167
JRNL DOI 10.1016/J.EJMECH.2022.114914
REMARK 2
REMARK 2 RESOLUTION. 2.28 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.16_3549
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.19
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 19978
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.163
REMARK 3 R VALUE (WORKING SET) : 0.162
REMARK 3 FREE R VALUE : 0.191
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 999
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 36.1900 - 4.3500 1.00 2762 145 0.1644 0.1758
REMARK 3 2 4.3500 - 3.4600 1.00 2729 144 0.1486 0.1676
REMARK 3 3 3.4600 - 3.0200 1.00 2720 143 0.1627 0.2059
REMARK 3 4 3.0200 - 2.7400 1.00 2701 142 0.1647 0.2047
REMARK 3 5 2.7400 - 2.5500 1.00 2723 143 0.1743 0.2263
REMARK 3 6 2.5500 - 2.4000 1.00 2683 142 0.1719 0.2264
REMARK 3 7 2.4000 - 2.2800 0.99 2661 140 0.1748 0.2348
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.264
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.959
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 42.56
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.77
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 2265
REMARK 3 ANGLE : 0.805 3074
REMARK 3 CHIRALITY : 0.052 330
REMARK 3 PLANARITY : 0.005 417
REMARK 3 DIHEDRAL : 20.536 1333
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 10 )
REMARK 3 ORIGIN FOR THE GROUP (A): 124.6906 194.1728 -16.4802
REMARK 3 T TENSOR
REMARK 3 T11: 0.4318 T22: 0.5533
REMARK 3 T33: 0.5310 T12: 0.0035
REMARK 3 T13: -0.0914 T23: 0.0284
REMARK 3 L TENSOR
REMARK 3 L11: 0.0413 L22: 0.0175
REMARK 3 L33: 0.0100 L12: 0.0014
REMARK 3 L13: 0.0061 L23: 0.0064
REMARK 3 S TENSOR
REMARK 3 S11: -0.0538 S12: 0.3554 S13: -0.2221
REMARK 3 S21: -0.3480 S22: 0.1349 S23: 0.2617
REMARK 3 S31: 0.1263 S32: -0.1450 S33: 0.0008
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 50 )
REMARK 3 ORIGIN FOR THE GROUP (A): 110.8340 209.7548 -0.5881
REMARK 3 T TENSOR
REMARK 3 T11: 0.7952 T22: 0.7978
REMARK 3 T33: 0.5874 T12: 0.3530
REMARK 3 T13: 0.0716 T23: -0.0370
REMARK 3 L TENSOR
REMARK 3 L11: 1.1142 L22: 0.4013
REMARK 3 L33: 0.1002 L12: 0.1444
REMARK 3 L13: 0.1414 L23: 0.1963
REMARK 3 S TENSOR
REMARK 3 S11: -0.2436 S12: -0.0307 S13: 0.5413
REMARK 3 S21: -0.4646 S22: -0.5966 S23: 0.1339
REMARK 3 S31: -0.0764 S32: -0.0608 S33: -0.2189
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 96 )
REMARK 3 ORIGIN FOR THE GROUP (A): 114.3364 201.1620 5.5392
REMARK 3 T TENSOR
REMARK 3 T11: 0.4674 T22: 0.4259
REMARK 3 T33: 0.4675 T12: 0.0830
REMARK 3 T13: 0.0466 T23: 0.0008
REMARK 3 L TENSOR
REMARK 3 L11: 0.5504 L22: 0.1877
REMARK 3 L33: 0.2336 L12: -0.1878
REMARK 3 L13: -0.1425 L23: -0.1072
REMARK 3 S TENSOR
REMARK 3 S11: -0.0571 S12: -0.6135 S13: -0.1733
REMARK 3 S21: 0.0045 S22: 0.0987 S23: 0.3431
REMARK 3 S31: -0.1090 S32: -0.4068 S33: 0.0216
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 140 )
REMARK 3 ORIGIN FOR THE GROUP (A): 122.2295 204.8807 -0.7808
REMARK 3 T TENSOR
REMARK 3 T11: 0.4212 T22: 0.3878
REMARK 3 T33: 0.3973 T12: 0.0640
REMARK 3 T13: 0.0178 T23: 0.0113
REMARK 3 L TENSOR
REMARK 3 L11: 0.7051 L22: 0.2448
REMARK 3 L33: 0.7469 L12: -0.2910
REMARK 3 L13: 0.4795 L23: 0.0380
REMARK 3 S TENSOR
REMARK 3 S11: 0.1478 S12: 0.1098 S13: 0.6013
REMARK 3 S21: -0.1452 S22: 0.1110 S23: 0.1610
REMARK 3 S31: -0.5204 S32: -0.3296 S33: 0.0178
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 305 )
REMARK 3 ORIGIN FOR THE GROUP (A): 135.4755 192.8798 -4.6687
REMARK 3 T TENSOR
REMARK 3 T11: 0.3506 T22: 0.2956
REMARK 3 T33: 0.3374 T12: 0.0155
REMARK 3 T13: -0.0168 T23: -0.0240
REMARK 3 L TENSOR
REMARK 3 L11: 1.0975 L22: 0.7396
REMARK 3 L33: 2.2496 L12: -0.2096
REMARK 3 L13: -0.2175 L23: -0.3344
REMARK 3 S TENSOR
REMARK 3 S11: 0.0317 S12: 0.0876 S13: -0.0525
REMARK 3 S21: -0.0240 S22: 0.0094 S23: 0.0239
REMARK 3 S31: 0.1294 S32: 0.1778 S33: 0.0000
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7Z6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-22.
REMARK 100 THE DEPOSITION ID IS D_1292120078.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 29-MAY-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.8-7.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL
REMARK 200 OPTICS : SAGITALLY BENDED SI111-CRYSTAL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.02
REMARK 200 DATA SCALING SOFTWARE : XDS 1.02
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19985
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280
REMARK 200 RESOLUTION RANGE LOW (A) : 48.899
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 11.40
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.05900
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9
REMARK 200 DATA REDUNDANCY IN SHELL : 11.60
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.46000
REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.280
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5NDT
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.50
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-PROPANE (PH 7.0), 10%
REMARK 280 ETHYLENE GLYCOL, 0.3% DMSO, 20% PEG3350, 200 MM MGOAC, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.37800
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.68900
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.03350
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.34450
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.72250
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 LEU A 2
REMARK 465 LEU A 3
REMARK 465 SER A 4
REMARK 465 LYS A 5
REMARK 465 ILE A 6
REMARK 465 ASN A 7
REMARK 465 SER A 8
REMARK 465 LEU A 9
REMARK 465 ALA A 10
REMARK 465 HIS A 11
REMARK 465 LEU A 12
REMARK 465 ARG A 13
REMARK 465 ALA A 14
REMARK 465 ALA A 15
REMARK 465 PRO A 16
REMARK 465 CYS A 17
REMARK 465 ASN A 18
REMARK 465 ASP A 19
REMARK 465 LEU A 20
REMARK 465 HIS A 21
REMARK 465 ALA A 22
REMARK 465 THR A 23
REMARK 465 LYS A 24
REMARK 465 LEU A 25
REMARK 465 ALA A 26
REMARK 465 PRO A 27
REMARK 465 GLY A 28
REMARK 465 LYS A 29
REMARK 465 GLU A 30
REMARK 465 LYS A 31
REMARK 465 GLU A 32
REMARK 465 GLY A 47
REMARK 465 PRO A 81
REMARK 465 ASN A 82
REMARK 465 GLY A 83
REMARK 465 GLY A 99
REMARK 465 SER A 306
REMARK 465 LEU A 307
REMARK 465 SER A 308
REMARK 465 PRO A 309
REMARK 465 GLY A 310
REMARK 465 PRO A 311
REMARK 465 SER A 312
REMARK 465 LYS A 313
REMARK 465 ALA D 1
REMARK 465 PRO D 11
REMARK 465 PRO D 12
REMARK 465 THR D 13
REMARK 465 ALA D 14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PRO A 33 CG CD
REMARK 470 LEU A 34 CG CD1 CD2
REMARK 470 GLU A 35 CG CD OE1 OE2
REMARK 470 SER A 36 OG
REMARK 470 GLN A 39 CG CD OE1 NE2
REMARK 470 LEU A 43 CD1
REMARK 470 SER A 46 OG
REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ILE A 56 CG2 CD1
REMARK 470 VAL A 58 CG1
REMARK 470 SER A 59 OG
REMARK 470 LEU A 62 CD2
REMARK 470 GLU A 70 OE2
REMARK 470 ASP A 72 OD1
REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2
REMARK 470 SER A 75 OG
REMARK 470 ASP A 76 OD1
REMARK 470 GLU A 79 CG CD OE1 OE2
REMARK 470 LEU A 80 CG CD1 CD2
REMARK 470 THR A 84 OG1 CG2
REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 94 CD CE NZ
REMARK 470 SER A 98 OG
REMARK 470 SER A 101 OG
REMARK 470 ARG A 105 NE CZ NH1 NH2
REMARK 470 PHE A 110 CE1 CZ
REMARK 470 ARG A 179 CZ NH1 NH2
REMARK 470 LYS A 183 NZ
REMARK 470 ASP A 202 OD1 OD2
REMARK 470 ARG A 214 CZ NH1 NH2
REMARK 470 ARG A 217 CD NE CZ NH1 NH2
REMARK 470 GLU A 246 OE1
REMARK 470 ILE A 249 CD1
REMARK 470 GLN A 252 CG CD OE1 NE2
REMARK 470 GLU A 262 OE1
REMARK 470 ARG A 274 CD NE CZ NH1 NH2
REMARK 470 LEU A 295 CD1 CD2
REMARK 470 GLN A 297 CG CD OE1 NE2
REMARK 470 LYS D 3 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 60 18.16 -145.39
REMARK 500 SER A 75 -71.29 -74.63
REMARK 500 SER A 97 20.38 -79.46
REMARK 500 ASP A 167 45.66 -141.21
REMARK 500 ASP A 186 81.97 53.69
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 7QB2 RELATED DB: PDB
REMARK 900 7QB2 CONTAINS THE SAME PROTEIN AND COFACTOR COMPLEXED WITH ANOTHER
REMARK 900 INHIBITOR
REMARK 900 RELATED ID: 7QFM RELATED DB: PDB
REMARK 900 7QFM CONTAINS THE SAME PROTEIN AND COFACTOR COMPLEXED WITH ANOTHER
REMARK 900 INHIBITOR
DBREF 7Z6U A 1 313 UNP P11309-1 PIM1-1_HUMAN 1 313
DBREF 7Z6U D 1 14 PDB 7Z6U 7Z6U 1 14
SEQADV 7Z6U GLY A 250 UNP P11309-1 ARG 250 ENGINEERED MUTATION
SEQRES 1 A 313 MET LEU LEU SER LYS ILE ASN SER LEU ALA HIS LEU ARG
SEQRES 2 A 313 ALA ALA PRO CYS ASN ASP LEU HIS ALA THR LYS LEU ALA
SEQRES 3 A 313 PRO GLY LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN
SEQRES 4 A 313 VAL GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL
SEQRES 5 A 313 TYR SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA
SEQRES 6 A 313 ILE LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY
SEQRES 7 A 313 GLU LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL
SEQRES 8 A 313 LEU LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE
SEQRES 9 A 313 ARG LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL
SEQRES 10 A 313 LEU ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE
SEQRES 11 A 313 ASP PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU
SEQRES 12 A 313 ALA ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG
SEQRES 13 A 313 HIS CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS
SEQRES 14 A 313 ASP GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU
SEQRES 15 A 313 LYS LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP
SEQRES 16 A 313 THR VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER
SEQRES 17 A 313 PRO PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG
SEQRES 18 A 313 SER ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP
SEQRES 19 A 313 MET VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU
SEQRES 20 A 313 ILE ILE GLY GLY GLN VAL PHE PHE ARG GLN ARG VAL SER
SEQRES 21 A 313 SEP GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU
SEQRES 22 A 313 ARG PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN
SEQRES 23 A 313 HIS PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR
SEQRES 24 A 313 ALA GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER
SEQRES 25 A 313 LYS
SEQRES 1 D 14 ALA ARG LYS ARG ARG ARG HIS PRO SER GLY PRO PRO THR
SEQRES 2 D 14 ALA
MODRES 7Z6U SEP A 261 SER MODIFIED RESIDUE
HET SEP A 261 10
HET GOL A 401 6
HET IJB A 402 21
HETNAM SEP PHOSPHOSERINE
HETNAM GOL GLYCEROL
HETNAM IJB 4-[(~{E})-(6-AZANYL-2-OXIDANYLIDENE-1~{H}-INDOL-3-
HETNAM 2 IJB YLIDENE)METHYL]BENZOIC ACID
HETSYN SEP PHOSPHONOSERINE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 1 SEP C3 H8 N O6 P
FORMUL 3 GOL C3 H8 O3
FORMUL 4 IJB C16 H12 N2 O3
FORMUL 5 HOH *94(H2 O)
HELIX 1 AA1 ASP A 72 ILE A 74 5 3
HELIX 2 AA2 MET A 88 SER A 97 1 10
HELIX 3 AA3 LEU A 129 GLY A 137 1 9
HELIX 4 AA4 GLN A 140 CYS A 161 1 22
HELIX 5 AA5 LYS A 169 GLU A 171 5 3
HELIX 6 AA6 THR A 204 SER A 208 5 5
HELIX 7 AA7 PRO A 209 HIS A 216 1 8
HELIX 8 AA8 HIS A 219 GLY A 238 1 20
HELIX 9 AA9 HIS A 244 GLY A 251 1 8
HELIX 10 AB1 SER A 260 LEU A 271 1 12
HELIX 11 AB2 ARG A 274 ARG A 278 5 5
HELIX 12 AB3 THR A 280 HIS A 287 1 8
HELIX 13 AB4 PRO A 288 GLN A 291 5 4
HELIX 14 AB5 LEU A 295 LEU A 304 1 10
SHEET 1 AA1 5 TYR A 38 LEU A 43 0
SHEET 2 AA1 5 SER A 51 ARG A 57 -1 O SER A 54 N PRO A 42
SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O ILE A 66 N TYR A 53
SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67
SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N LEU A 107 O ILE A 119
SHEET 1 AA2 2 TRP A 77 GLY A 78 0
SHEET 2 AA2 2 VAL A 86 PRO A 87 -1 O VAL A 86 N GLY A 78
SHEET 1 AA3 3 VAL A 126 ASP A 128 0
SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127
SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176
SHEET 1 AA4 2 VAL A 163 LEU A 164 0
SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164
LINK C SER A 260 N SEP A 261 1555 1555 1.33
LINK C SEP A 261 N GLU A 262 1555 1555 1.33
CISPEP 1 GLU A 124 PRO A 125 0 -2.40
CRYST1 97.797 97.797 80.067 90.00 90.00 120.00 P 65 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010225 0.005904 0.000000 0.00000
SCALE2 0.000000 0.011807 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012490 0.00000