HEADER TRANSFERASE 15-MAR-22 7Z74 TITLE PI3KC2A CORE IN COMPLEX WITH PITCOIN2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4-PHOSPHATE 3-KINASE C2 DOMAIN- COMPND 3 CONTAINING SUBUNIT ALPHA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PI3K-C2-ALPHA,PTDINS-3-KINASE C2 SUBUNIT ALPHA,CPK-M, COMPND 6 PHOSPHOINOSITIDE 3-KINASE-C2-ALPHA,P170; COMPND 7 EC: 2.7.1.137,2.7.1.153,2.7.1.154,2.7.1.137,2.7.1.153,2.7.1.154, COMPND 8 2.7.1.137,2.7.1.153,2.7.1.154; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIK3C2A, CPK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PI3KC2 ALPHA, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.T.LO,Y.ROSKE,O.DAUMKE,V.HAUCKE REVDAT 4 31-JAN-24 7Z74 1 REMARK REVDAT 3 11-JAN-23 7Z74 1 JRNL REVDAT 2 28-SEP-22 7Z74 1 JRNL REVDAT 1 31-AUG-22 7Z74 0 JRNL AUTH W.T.LO,H.BELABED,M.KUCUKDISLI,J.METAG,Y.ROSKE,P.PROKOFEVA, JRNL AUTH 2 Y.OHASHI,A.HORATSCHECK,D.CIRILLO,M.KRAUSS,C.SCHMIED, JRNL AUTH 3 M.NEUENSCHWANDER,J.P.VON KRIES,G.MEDARD,B.KUSTER,O.PERISIC, JRNL AUTH 4 R.L.WILLIAMS,O.DAUMKE,B.PAYRASTRE,S.SEVERIN,M.NAZARE, JRNL AUTH 5 V.HAUCKE JRNL TITL DEVELOPMENT OF SELECTIVE INHIBITORS OF PHOSPHATIDYLINOSITOL JRNL TITL 2 3-KINASE C2 ALPHA. JRNL REF NAT.CHEM.BIOL. V. 19 18 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 36109648 JRNL DOI 10.1038/S41589-022-01118-Z REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 40955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2600 - 6.1600 0.99 2769 146 0.1909 0.2414 REMARK 3 2 6.1500 - 4.8900 1.00 2656 139 0.1957 0.2571 REMARK 3 3 4.8900 - 4.2700 0.99 2619 138 0.1631 0.1834 REMARK 3 4 4.2700 - 3.8800 1.00 2611 138 0.1785 0.2185 REMARK 3 5 3.8800 - 3.6000 1.00 2595 136 0.2060 0.2668 REMARK 3 6 3.6000 - 3.3900 1.00 2585 136 0.2364 0.2516 REMARK 3 7 3.3900 - 3.2200 1.00 2596 137 0.2651 0.3282 REMARK 3 8 3.2200 - 3.0800 1.00 2582 136 0.2845 0.3355 REMARK 3 9 3.0800 - 2.9600 1.00 2548 134 0.3006 0.3933 REMARK 3 10 2.9600 - 2.8600 1.00 2585 136 0.3420 0.4258 REMARK 3 11 2.8600 - 2.7700 1.00 2559 135 0.3388 0.3635 REMARK 3 12 2.7700 - 2.6900 1.00 2561 135 0.3661 0.3603 REMARK 3 13 2.6900 - 2.6200 1.00 2565 135 0.3729 0.4113 REMARK 3 14 2.6200 - 2.5600 1.00 2508 132 0.4133 0.4170 REMARK 3 15 2.5600 - 2.5000 0.99 2568 135 0.4291 0.4578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4776 -1.4694 -15.7735 REMARK 3 T TENSOR REMARK 3 T11: 0.6270 T22: 0.8213 REMARK 3 T33: 0.6357 T12: -0.0210 REMARK 3 T13: -0.0941 T23: -0.1390 REMARK 3 L TENSOR REMARK 3 L11: 0.8893 L22: 2.8416 REMARK 3 L33: 3.8202 L12: -0.1404 REMARK 3 L13: -0.8409 L23: 1.9079 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: -0.2193 S13: -0.0800 REMARK 3 S21: 0.1070 S22: 0.2092 S23: -0.4085 REMARK 3 S31: -0.0182 S32: 0.8081 S33: -0.4334 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0426 -16.0390 -48.8184 REMARK 3 T TENSOR REMARK 3 T11: 0.5728 T22: 0.5297 REMARK 3 T33: 0.4596 T12: -0.0077 REMARK 3 T13: 0.0443 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.7997 L22: 1.5815 REMARK 3 L33: 2.9854 L12: 0.1451 REMARK 3 L13: 0.5410 L23: 1.3863 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.0879 S13: -0.1268 REMARK 3 S21: -0.0857 S22: 0.1840 S23: -0.0998 REMARK 3 S31: 0.0422 S32: 0.1267 S33: -0.1431 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 570 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7279 0.0692 -56.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.9850 T22: 0.8261 REMARK 3 T33: 0.5597 T12: -0.0601 REMARK 3 T13: 0.2101 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.6113 L22: 3.2644 REMARK 3 L33: 1.8814 L12: 0.5215 REMARK 3 L13: 0.0043 L23: 1.9673 REMARK 3 S TENSOR REMARK 3 S11: 0.1582 S12: 0.1916 S13: 0.2011 REMARK 3 S21: -0.5590 S22: 0.1990 S23: -0.4534 REMARK 3 S31: -0.6918 S32: 0.3510 S33: -0.2992 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 571 THROUGH 795 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3258 -8.6008 -25.2712 REMARK 3 T TENSOR REMARK 3 T11: 0.5934 T22: 0.5875 REMARK 3 T33: 0.4399 T12: -0.0706 REMARK 3 T13: -0.1063 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.6227 L22: 1.6269 REMARK 3 L33: 2.7316 L12: -0.1266 REMARK 3 L13: -0.9114 L23: 0.1614 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: -0.1830 S13: -0.1841 REMARK 3 S21: 0.1260 S22: 0.1065 S23: 0.1070 REMARK 3 S31: 0.3821 S32: -0.1654 S33: -0.1341 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 796 THROUGH 864 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0803 13.7001 -15.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.6841 T22: 0.7326 REMARK 3 T33: 0.6256 T12: 0.0194 REMARK 3 T13: 0.1130 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.5571 L22: 3.7557 REMARK 3 L33: 3.5104 L12: 0.7367 REMARK 3 L13: -0.6968 L23: -0.3365 REMARK 3 S TENSOR REMARK 3 S11: 0.2620 S12: -0.4216 S13: 0.3943 REMARK 3 S21: 0.5800 S22: -0.1161 S23: 0.7488 REMARK 3 S31: -0.4145 S32: -0.5402 S33: 0.0599 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 865 THROUGH 1006 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4135 16.7523 -31.7212 REMARK 3 T TENSOR REMARK 3 T11: 0.7756 T22: 0.6201 REMARK 3 T33: 0.5290 T12: 0.0131 REMARK 3 T13: -0.0214 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.0157 L22: 3.8657 REMARK 3 L33: 3.0126 L12: -0.9212 REMARK 3 L13: -0.6319 L23: 2.0604 REMARK 3 S TENSOR REMARK 3 S11: 0.3332 S12: 0.1849 S13: 0.1482 REMARK 3 S21: -0.7571 S22: -0.3308 S23: 0.3502 REMARK 3 S31: -0.7754 S32: -0.5135 S33: 0.0279 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Z74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292121706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41035 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BI4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1MTRIS, 8-6% PEG3350, 0.2-0.1M REMARK 280 MGSO4, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.15450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.95800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.57550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.95800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.15450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.57550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 42 REMARK 465 ASN A 43 REMARK 465 MET A 44 REMARK 465 CYS A 45 REMARK 465 GLY A 46 REMARK 465 GLU A 47 REMARK 465 ASN A 48 REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 465 GLY A 269 REMARK 465 SER A 270 REMARK 465 VAL A 271 REMARK 465 MET A 272 REMARK 465 THR A 273 REMARK 465 ARG A 274 REMARK 465 HIS A 275 REMARK 465 SER A 276 REMARK 465 ALA A 277 REMARK 465 GLY A 278 REMARK 465 ALA A 279 REMARK 465 GLY A 280 REMARK 465 SER A 281 REMARK 465 GLY A 282 REMARK 465 ALA A 283 REMARK 465 SER A 284 REMARK 465 THR A 285 REMARK 465 GLY A 286 REMARK 465 CYS A 287 REMARK 465 PRO A 288 REMARK 465 ARG A 289 REMARK 465 GLY A 290 REMARK 465 SER A 291 REMARK 465 SER A 389 REMARK 465 SER A 390 REMARK 465 GLY A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ASP A 395 REMARK 465 SER A 396 REMARK 465 ASN A 397 REMARK 465 LYS A 398 REMARK 465 GLN A 399 REMARK 465 ARG A 400 REMARK 465 LYS A 401 REMARK 465 SER A 433 REMARK 465 HIS A 434 REMARK 465 THR A 435 REMARK 465 ASN A 436 REMARK 465 SER A 437 REMARK 465 ILE A 438 REMARK 465 PRO A 439 REMARK 465 GLY A 440 REMARK 465 ALA A 441 REMARK 465 ILE A 442 REMARK 465 PRO A 443 REMARK 465 LYS A 444 REMARK 465 LYS A 445 REMARK 465 SER A 446 REMARK 465 TYR A 447 REMARK 465 VAL A 448 REMARK 465 MET A 449 REMARK 465 GLN A 478 REMARK 465 GLN A 479 REMARK 465 GLN A 895 REMARK 465 MET A 896 REMARK 465 PHE A 897 REMARK 465 GLY A 898 REMARK 465 SER A 899 REMARK 465 PHE A 900 REMARK 465 LYS A 901 REMARK 465 ARG A 902 REMARK 465 ASP A 903 REMARK 465 ARG A 904 REMARK 465 PHE A 1007 REMARK 465 ILE A 1008 REMARK 465 HIS A 1009 REMARK 465 ASN A 1010 REMARK 465 LEU A 1011 REMARK 465 ALA A 1012 REMARK 465 GLN A 1013 REMARK 465 LEU A 1014 REMARK 465 ARG A 1015 REMARK 465 PHE A 1016 REMARK 465 SER A 1017 REMARK 465 GLY A 1018 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 LEU A 89 CG CD1 CD2 REMARK 470 ASN A 158 CG OD1 ND2 REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 ASP A 480 CG OD1 OD2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 LEU A 482 CG CD1 CD2 REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 THR A 545 CG2 REMARK 470 GLU A 662 CG CD OE1 OE2 REMARK 470 ARG A 689 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 889 CG CD CE NZ REMARK 470 GLN A 979 CG CD OE1 NE2 REMARK 470 ARG A 991 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 994 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 839 C SER A 839 O 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 366 43.70 -81.49 REMARK 500 THR A 484 61.09 -118.30 REMARK 500 ASP A 488 -11.90 75.33 REMARK 500 ASN A 525 2.68 -65.58 REMARK 500 PRO A 715 2.38 -64.56 REMARK 500 GLN A 977 70.36 44.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1274 DISTANCE = 6.50 ANGSTROMS DBREF 7Z74 A 1 158 UNP Q61194 P3C2A_MOUSE 375 532 DBREF 7Z74 A 271 275 UNP Q61194 P3C2A_MOUSE 545 549 DBREF 7Z74 A 284 1018 UNP Q61194 P3C2A_MOUSE 666 1400 SEQADV 7Z74 GLY A 1 UNP Q61194 PHE 375 ENGINEERED MUTATION SEQADV 7Z74 ALA A 2 UNP Q61194 GLU 376 ENGINEERED MUTATION SEQADV 7Z74 GLY A 267 UNP Q61194 LINKER SEQADV 7Z74 SER A 268 UNP Q61194 LINKER SEQADV 7Z74 GLY A 269 UNP Q61194 LINKER SEQADV 7Z74 SER A 270 UNP Q61194 LINKER SEQADV 7Z74 SER A 276 UNP Q61194 LINKER SEQADV 7Z74 ALA A 277 UNP Q61194 LINKER SEQADV 7Z74 GLY A 278 UNP Q61194 LINKER SEQADV 7Z74 ALA A 279 UNP Q61194 LINKER SEQADV 7Z74 GLY A 280 UNP Q61194 LINKER SEQADV 7Z74 SER A 281 UNP Q61194 LINKER SEQADV 7Z74 GLY A 282 UNP Q61194 LINKER SEQADV 7Z74 ALA A 283 UNP Q61194 LINKER SEQADV 7Z74 GLY A 286 UNP Q61194 ALA 668 CONFLICT SEQADV 7Z74 ALA A 353 UNP Q61194 PHE 735 CONFLICT SEQADV 7Z74 ALA A 354 UNP Q61194 PHE 736 CONFLICT SEQADV 7Z74 ALA A 427 UNP Q61194 LEU 809 ENGINEERED MUTATION SEQRES 1 A 910 GLY ALA VAL GLN ASN ASP GLU VAL ALA ALA PHE CYS GLN SEQRES 2 A 910 SER ILE MET LYS LEU LYS THR LYS PHE PRO TYR THR ASP SEQRES 3 A 910 HIS CYS THR ASN PRO GLY TYR LEU LEU SER PRO VAL THR SEQRES 4 A 910 VAL GLN ARG ASN MET CYS GLY GLU ASN ALA SER VAL LYS SEQRES 5 A 910 VAL SER ILE GLU ILE GLU GLY LEU GLN LEU PRO VAL THR SEQRES 6 A 910 PHE THR CYS ASP VAL SER SER THR VAL GLU ILE ILE ILE SEQRES 7 A 910 MET GLN ALA LEU CYS TRP VAL HIS ASP ASP LEU ASN GLN SEQRES 8 A 910 VAL ASP VAL GLY SER TYR ILE LEU LYS VAL CYS GLY GLN SEQRES 9 A 910 GLU GLU VAL LEU GLN ASN ASN HIS CYS LEU GLY SER HIS SEQRES 10 A 910 GLU HIS ILE GLN ASN CYS ARG LYS TRP ASP THR GLU ILE SEQRES 11 A 910 LYS LEU GLN LEU LEU THR LEU SER ALA MET CYS GLN ASN SEQRES 12 A 910 LEU ALA ARG THR ALA GLU ASP ASP GLU ALA PRO VAL ASP SEQRES 13 A 910 LEU ASN GLY SER GLY SER VAL MET THR ARG HIS SER ALA SEQRES 14 A 910 GLY ALA GLY SER GLY ALA SER THR GLY CYS PRO ARG GLY SEQRES 15 A 910 SER ARG ASN ILE LYS GLU ALA TRP THR ALA THR GLU GLN SEQRES 16 A 910 LEU GLN PHE THR VAL TYR ALA ALA HIS GLY ILE SER SER SEQRES 17 A 910 ASN TRP VAL SER ASN TYR GLU LYS TYR TYR LEU ILE CYS SEQRES 18 A 910 SER LEU SER HIS ASN GLY LYS ASP LEU PHE LYS PRO ILE SEQRES 19 A 910 GLN SER LYS LYS VAL GLY THR TYR LYS ASN ALA ALA TYR SEQRES 20 A 910 LEU ILE LYS TRP ASP GLU LEU ILE ILE PHE PRO ILE GLN SEQRES 21 A 910 ILE SER GLN LEU PRO LEU GLU SER VAL LEU HIS LEU THR SEQRES 22 A 910 LEU PHE GLY VAL LEU ASN GLN SER SER GLY SER SER PRO SEQRES 23 A 910 ASP SER ASN LYS GLN ARG LYS GLY PRO GLU ALA LEU GLY SEQRES 24 A 910 LYS VAL SER LEU THR LEU PHE ASP PHE LYS ARG PHE LEU SEQRES 25 A 910 THR CYS GLY THR LYS LEU ALA TYR LEU TRP THR SER SER SEQRES 26 A 910 HIS THR ASN SER ILE PRO GLY ALA ILE PRO LYS LYS SER SEQRES 27 A 910 TYR VAL MET GLU ARG ILE VAL LEU GLN VAL ASP PHE PRO SEQRES 28 A 910 SER PRO ALA PHE ASP ILE ILE TYR THR SER PRO GLN ILE SEQRES 29 A 910 ASP ARG ASN ILE ILE GLN GLN ASP LYS LEU GLU THR LEU SEQRES 30 A 910 GLU SER ASP ILE LYS GLY LYS LEU LEU ASP ILE ILE HIS SEQRES 31 A 910 ARG ASP SER SER PHE GLY LEU SER LYS GLU ASP LYS VAL SEQRES 32 A 910 PHE LEU TRP GLU ASN ARG TYR TYR CYS LEU LYS HIS PRO SEQRES 33 A 910 ASN CYS LEU PRO LYS ILE LEU ALA SER ALA PRO ASN TRP SEQRES 34 A 910 LYS TRP ALA ASN LEU ALA LYS THR TYR SER LEU LEU HIS SEQRES 35 A 910 GLN TRP PRO PRO LEU CYS PRO LEU ALA ALA LEU GLU LEU SEQRES 36 A 910 LEU ASP ALA LYS PHE ALA ASP GLN GLU VAL ARG SER LEU SEQRES 37 A 910 ALA VAL SER TRP MET GLU ALA ILE SER ASP ASP GLU LEU SEQRES 38 A 910 ALA ASP LEU LEU PRO GLN PHE VAL GLN ALA LEU LYS TYR SEQRES 39 A 910 GLU ILE TYR LEU ASN SER SER LEU VAL ARG PHE LEU LEU SEQRES 40 A 910 SER ARG ALA LEU GLY ASN ILE GLN ILE ALA HIS SER LEU SEQRES 41 A 910 TYR TRP LEU LEU LYS ASP ALA LEU HIS ASP THR HIS PHE SEQRES 42 A 910 GLY SER ARG TYR GLU HIS VAL LEU GLY ALA LEU LEU SER SEQRES 43 A 910 VAL GLY GLY LYS GLY LEU ARG GLU GLU LEU SER LYS GLN SEQRES 44 A 910 MET LYS LEU VAL GLN LEU LEU GLY GLY VAL ALA GLU LYS SEQRES 45 A 910 VAL ARG GLN ALA SER GLY SER THR ARG GLN VAL VAL LEU SEQRES 46 A 910 GLN LYS SER MET GLU ARG VAL GLN SER PHE PHE LEU ARG SEQRES 47 A 910 ASN LYS CYS ARG LEU PRO LEU LYS PRO SER LEU VAL ALA SEQRES 48 A 910 LYS GLU LEU ASN ILE LYS SER CYS SER PHE PHE SER SER SEQRES 49 A 910 ASN ALA MET PRO LEU LYS VAL THR MET VAL ASN ALA ASP SEQRES 50 A 910 PRO LEU GLY GLU GLU ILE ASN VAL MET PHE LYS VAL GLY SEQRES 51 A 910 GLU ASP LEU ARG GLN ASP MET LEU ALA LEU GLN MET ILE SEQRES 52 A 910 LYS ILE MET ASP LYS ILE TRP LEU LYS GLU GLY LEU ASP SEQRES 53 A 910 LEU ARG MET VAL ILE PHE ARG CYS LEU SER THR GLY ARG SEQRES 54 A 910 ASP ARG GLY MET VAL GLU LEU VAL PRO ALA SER ASP THR SEQRES 55 A 910 LEU ARG LYS ILE GLN VAL GLU TYR GLY VAL THR GLY SER SEQRES 56 A 910 PHE LYS ASP LYS PRO LEU ALA GLU TRP LEU ARG LYS TYR SEQRES 57 A 910 ASN PRO SER GLU GLU GLU TYR GLU LYS ALA SER GLU ASN SEQRES 58 A 910 PHE ILE TYR SER CYS ALA GLY CYS CYS VAL ALA THR TYR SEQRES 59 A 910 VAL LEU GLY ILE CYS ASP ARG HIS ASN ASP ASN ILE MET SEQRES 60 A 910 LEU ARG SER THR GLY HIS MET PHE HIS ILE ASP PHE GLY SEQRES 61 A 910 LYS PHE LEU GLY HIS ALA GLN MET PHE GLY SER PHE LYS SEQRES 62 A 910 ARG ASP ARG ALA PRO PHE VAL LEU THR SER ASP MET ALA SEQRES 63 A 910 TYR VAL ILE ASN GLY GLY GLU LYS PRO THR ILE ARG PHE SEQRES 64 A 910 GLN LEU PHE VAL ASP LEU CYS CYS GLN ALA TYR ASN LEU SEQRES 65 A 910 ILE ARG LYS GLN THR ASN LEU PHE LEU ASN LEU LEU SER SEQRES 66 A 910 LEU MET ILE PRO SER GLY LEU PRO GLU LEU THR SER ILE SEQRES 67 A 910 GLN ASP LEU LYS TYR VAL ARG ASP ALA LEU GLN PRO GLN SEQRES 68 A 910 THR THR ASP ALA GLU ALA THR ILE PHE PHE THR ARG LEU SEQRES 69 A 910 ILE GLU SER SER LEU GLY SER ILE ALA THR LYS PHE ASN SEQRES 70 A 910 PHE PHE ILE HIS ASN LEU ALA GLN LEU ARG PHE SER GLY HET IKC A1101 36 HET EDO A1102 4 HET EDO A1103 4 HET EDO A1104 4 HET EDO A1105 4 HET EDO A1106 4 HETNAM IKC ~{N}-[4-(3-HYDROXYPHENYL)-1,3-THIAZOL-2-YL]-2-[4- HETNAM 2 IKC OXIDANYLIDENE-3-(2-PHENYLETHYL)PTERIDIN-2-YL]SULFANYL- HETNAM 3 IKC ETHANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 IKC C25 H20 N6 O3 S2 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *74(H2 O) HELIX 1 AA1 VAL A 3 LYS A 21 1 19 HELIX 2 AA2 THR A 73 HIS A 86 1 14 HELIX 3 AA3 HIS A 117 ASP A 127 1 11 HELIX 4 AA4 THR A 147 ALA A 153 1 7 HELIX 5 AA5 TRP A 298 ALA A 300 5 3 HELIX 6 AA6 SER A 315 ASN A 321 1 7 HELIX 7 AA7 SER A 370 LEU A 372 5 3 HELIX 8 AA8 ASP A 488 HIS A 498 1 11 HELIX 9 AA9 SER A 506 ASN A 516 1 11 HELIX 10 AB1 ARG A 517 CYS A 520 5 4 HELIX 11 AB2 HIS A 523 ASN A 525 5 3 HELIX 12 AB3 CYS A 526 SER A 533 1 8 HELIX 13 AB4 LYS A 538 GLN A 551 1 14 HELIX 14 AB5 CYS A 556 LEU A 561 1 6 HELIX 15 AB6 GLU A 562 ASP A 565 5 4 HELIX 16 AB7 ASP A 570 GLU A 582 1 13 HELIX 17 AB8 SER A 585 LEU A 600 1 16 HELIX 18 AB9 LYS A 601 GLU A 603 5 3 HELIX 19 AC1 SER A 608 ASN A 621 1 14 HELIX 20 AC2 ASN A 621 LEU A 636 1 16 HELIX 21 AC3 PHE A 641 GLY A 657 1 17 HELIX 22 AC4 GLY A 657 ALA A 684 1 28 HELIX 23 AC5 GLY A 686 ASN A 707 1 22 HELIX 24 AC6 ILE A 724 CYS A 727 5 4 HELIX 25 AC7 ASP A 760 GLU A 781 1 22 HELIX 26 AC8 LEU A 811 VAL A 820 1 10 HELIX 27 AC9 LYS A 827 ASN A 837 1 11 HELIX 28 AD1 SER A 839 GLY A 865 1 27 HELIX 29 AD2 THR A 910 GLY A 919 1 10 HELIX 30 AD3 THR A 924 GLN A 944 1 21 HELIX 31 AD4 GLN A 944 ILE A 956 1 13 HELIX 32 AD5 PRO A 957 GLY A 959 5 3 HELIX 33 AD6 SER A 965 GLN A 977 1 13 HELIX 34 AD7 THR A 981 GLY A 998 1 18 HELIX 35 AD8 SER A 999 PHE A 1004 5 6 SHEET 1 AA1 2 LEU A 34 LEU A 35 0 SHEET 2 AA1 2 GLU A 106 VAL A 107 1 O VAL A 107 N LEU A 34 SHEET 1 AA2 4 VAL A 64 ASP A 69 0 SHEET 2 AA2 4 SER A 50 GLU A 56 -1 N VAL A 51 O CYS A 68 SHEET 3 AA2 4 ILE A 130 LEU A 135 1 O LEU A 132 N SER A 54 SHEET 4 AA2 4 ILE A 98 VAL A 101 -1 N ILE A 98 O LEU A 135 SHEET 1 AA3 2 ILE A 294 GLU A 296 0 SHEET 2 AA3 2 ASP A 464 ILE A 466 1 O ASP A 464 N LYS A 295 SHEET 1 AA4 5 THR A 349 TYR A 350 0 SHEET 2 AA4 5 ALA A 353 GLN A 368 -1 O LEU A 356 N TYR A 350 SHEET 3 AA4 5 GLN A 303 HIS A 312 -1 N TYR A 309 O TRP A 359 SHEET 4 AA4 5 ARG A 451 PHE A 458 -1 O VAL A 453 N HIS A 312 SHEET 5 AA4 5 GLY A 423 TRP A 430 -1 N LYS A 425 O VAL A 456 SHEET 1 AA5 4 LYS A 336 GLN A 343 0 SHEET 2 AA5 4 TYR A 322 HIS A 333 -1 N CYS A 329 O ILE A 342 SHEET 3 AA5 4 VAL A 377 LEU A 386 -1 O HIS A 379 N SER A 330 SHEET 4 AA5 4 GLU A 404 THR A 412 -1 O LEU A 406 N LEU A 382 SHEET 1 AA6 4 CYS A 709 ARG A 710 0 SHEET 2 AA6 4 VAL A 718 LEU A 722 -1 O ALA A 719 N CYS A 709 SHEET 3 AA6 4 LEU A 737 ASN A 743 -1 O VAL A 742 N GLU A 721 SHEET 4 AA6 4 SER A 728 PHE A 729 -1 N SER A 728 O LYS A 738 SHEET 1 AA7 6 CYS A 709 ARG A 710 0 SHEET 2 AA7 6 VAL A 718 LEU A 722 -1 O ALA A 719 N CYS A 709 SHEET 3 AA7 6 LEU A 737 ASN A 743 -1 O VAL A 742 N GLU A 721 SHEET 4 AA7 6 ILE A 751 VAL A 757 -1 O PHE A 755 N LEU A 737 SHEET 5 AA7 6 ARG A 799 GLU A 803 -1 O VAL A 802 N MET A 754 SHEET 6 AA7 6 CYS A 792 GLY A 796 -1 N LEU A 793 O MET A 801 SHEET 1 AA8 3 SER A 808 THR A 810 0 SHEET 2 AA8 3 ILE A 874 ARG A 877 -1 O LEU A 876 N ASP A 809 SHEET 3 AA8 3 MET A 882 HIS A 884 -1 O PHE A 883 N MET A 875 CRYST1 56.309 135.151 151.916 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006583 0.00000