HEADER VIRAL PROTEIN 18-MAR-22 7Z8O
TITLE CRYSTAL STRUCTURE OF SARS-COV-2 S RBD IN COMPLEX WITH A STAPLED
TITLE 2 PEPTIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SPIKE PROTEIN S1;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: STAPLED PEPTIDE;
COMPND 7 CHAIN: B;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS
SOURCE 3 2;
SOURCE 4 ORGANISM_TAXID: 2697049;
SOURCE 5 GENE: S, 2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 11 ORGANISM_TAXID: 32630
KEYWDS SRBD, STAPLED PEPTIDE, VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.BREAR,L.CHEN,K.GAYNOR,M.HARMAN,R.DODS,M.HYVONEN
REVDAT 2 07-FEB-24 7Z8O 1 REMARK
REVDAT 1 28-JUN-23 7Z8O 0
JRNL AUTH K.U.GAYNOR,M.VAYSBURD,M.A.J.HARMAN,A.ALBECKA,P.JEFFREY,
JRNL AUTH 2 P.BESWICK,G.PAPA,L.CHEN,D.MALLERY,B.MCGUINNESS,
JRNL AUTH 3 K.VAN RIETSCHOTEN,S.STANWAY,P.BREAR,A.LULLA,K.CIAZYNSKA,
JRNL AUTH 4 V.T.CHANG,J.SHARP,M.NEARY,H.BOX,J.HERRIOTT,E.KIJAK,L.TATHAM,
JRNL AUTH 5 E.G.BENTLEY,P.SHARMA,A.KIRBY,X.HAN,J.P.STEWART,A.OWEN,
JRNL AUTH 6 J.A.G.BRIGGS,M.HYVONEN,M.J.SKYNNER,L.C.JAMES
JRNL TITL MULTIVALENT BICYCLIC PEPTIDES ARE AN EFFECTIVE ANTIVIRAL
JRNL TITL 2 MODALITY THAT CAN POTENTLY INHIBIT SARS-COV-2.
JRNL REF NAT COMMUN V. 14 3583 2023
JRNL REFN ESSN 2041-1723
JRNL PMID 37328472
JRNL DOI 10.1038/S41467-023-39158-1
REMARK 2
REMARK 2 RESOLUTION. 0.96 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0267
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.96
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.20
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2
REMARK 3 NUMBER OF REFLECTIONS : 116468
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.153
REMARK 3 R VALUE (WORKING SET) : 0.152
REMARK 3 FREE R VALUE : 0.169
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 6131
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.96
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.99
REMARK 3 REFLECTION IN BIN (WORKING SET) : 6854
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.06
REMARK 3 BIN R VALUE (WORKING SET) : 0.4030
REMARK 3 BIN FREE R VALUE SET COUNT : 365
REMARK 3 BIN FREE R VALUE : 0.4420
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1640
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 27
REMARK 3 SOLVENT ATOMS : 340
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.86
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.03000
REMARK 3 B22 (A**2) : 0.03000
REMARK 3 B33 (A**2) : -0.06000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.022
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.798
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1854 ; 0.019 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 1672 ; 0.004 ; 0.015
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2543 ; 2.117 ; 1.655
REMARK 3 BOND ANGLES OTHERS (DEGREES): 3845 ; 1.668 ; 1.602
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 236 ; 7.055 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;33.191 ;21.856
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;11.456 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.084 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 231 ; 0.120 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2247 ; 0.013 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 479 ; 0.004 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3525 ;14.993 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4
REMARK 4 7Z8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-22.
REMARK 100 THE DEPOSITION ID IS D_1292121680.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-FEB-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.8
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123986
REMARK 200 RESOLUTION RANGE HIGH (A) : 0.960
REMARK 200 RESOLUTION RANGE LOW (A) : 46.200
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : 18.70
REMARK 200 R MERGE (I) : 0.06100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.96
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.98
REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4
REMARK 200 DATA REDUNDANCY IN SHELL : 6.20
REMARK 200 R MERGE FOR SHELL (I) : 1.62700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 7CH5
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.92
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 22 %V/V PEGSB, 0.1 M NA PHOS CIT 5.5
REMARK 280 PH, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.08150
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.35900
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.84600
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.35900
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.08150
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.84600
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 11040 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 330
REMARK 465 SER A 331
REMARK 465 GLY A 332
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A 377 80.14 -150.66
REMARK 500 ASN A 422 -54.14 -127.66
REMARK 500
REMARK 500 REMARK: NULL
DBREF 7Z8O A 333 527 UNP P0DTC2 SPIKE_SARS2 333 527
DBREF 7Z8O B 259 279 PDB 7Z8O 7Z8O 259 279
SEQADV 7Z8O GLY A 330 UNP P0DTC2 EXPRESSION TAG
SEQADV 7Z8O SER A 331 UNP P0DTC2 EXPRESSION TAG
SEQADV 7Z8O GLY A 332 UNP P0DTC2 EXPRESSION TAG
SEQRES 1 A 198 GLY SER GLY THR ASN LEU CYS PRO PHE GLY GLU VAL PHE
SEQRES 2 A 198 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG
SEQRES 3 A 198 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU
SEQRES 4 A 198 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY
SEQRES 5 A 198 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN
SEQRES 6 A 198 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL
SEQRES 7 A 198 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP
SEQRES 8 A 198 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL
SEQRES 9 A 198 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY
SEQRES 10 A 198 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER
SEQRES 11 A 198 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE
SEQRES 12 A 198 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY
SEQRES 13 A 198 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN
SEQRES 14 A 198 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL
SEQRES 15 A 198 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL
SEQRES 16 A 198 CYS GLY PRO
SEQRES 1 B 14 ACE CYS PRO TYR VAL ALA GLY 4J5 DAL THR CYS LEU 0JY
SEQRES 2 B 14 CY3
HET ACE B 259 3
HET 4J5 B 273 10
HET DAL B 274 5
HET 0JY B 278 9
HET CY3 B 279 7
HET GOL A 601 6
HET GOL B 301 6
HET GOL B 302 6
HET KZ0 B 303 9
HETNAM ACE ACETYL GROUP
HETNAM 4J5 AMINO{[(3S)-3-AMINO-3-CARBOXYPROPYL]AMINO}METHANIMINIUM
HETNAM DAL D-ALANINE
HETNAM 0JY 4-METHYL-L-LEUCINE
HETNAM CY3 2-AMINO-3-MERCAPTO-PROPIONAMIDE
HETNAM GOL GLYCEROL
HETNAM KZ0 2,4,6-TRIS(CHLOROMETHYL)-1,3,5-TRIAZINE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
HETSYN KZ0 CHEMICAL CROSSLINKER
FORMUL 2 ACE C2 H4 O
FORMUL 2 4J5 C5 H13 N4 O2 1+
FORMUL 2 DAL C3 H7 N O2
FORMUL 2 0JY C7 H15 N O2
FORMUL 2 CY3 C3 H8 N2 O S
FORMUL 3 GOL 3(C3 H8 O3)
FORMUL 6 KZ0 C6 H6 CL3 N3
FORMUL 7 HOH *340(H2 O)
HELIX 1 AA1 PRO A 337 ASN A 343 1 7
HELIX 2 AA2 SER A 349 TRP A 353 5 5
HELIX 3 AA3 ASP A 364 ASN A 370 1 7
HELIX 4 AA4 SER A 383 ASP A 389 5 7
HELIX 5 AA5 ASP A 405 ILE A 410 5 6
HELIX 6 AA6 GLY A 416 ASN A 422 1 7
HELIX 7 AA7 SER A 438 SER A 443 1 6
HELIX 8 AA8 GLY A 502 TYR A 505 5 4
HELIX 9 AA9 4J5 B 273 LEU B 277 5 5
SHEET 1 AA1 5 ASN A 354 ILE A 358 0
SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358
SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398
SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N CYS A 432 O LEU A 513
SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431
SHEET 1 AA2 3 CYS A 361 VAL A 362 0
SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361
SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524
SHEET 1 AA3 2 LEU A 452 ARG A 454 0
SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453
SHEET 1 AA4 2 TYR A 473 GLN A 474 0
SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473
SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.07
SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.08
SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.09
SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.07
LINK C ACE B 259 N CYS B 260 1555 1555 1.43
LINK SG CYS B 260 C5 KZ0 B 303 1555 1555 1.84
LINK C GLY B 265 N 4J5 B 273 1555 1555 1.33
LINK C 4J5 B 273 N DAL B 274 1555 1555 1.34
LINK C DAL B 274 N THR B 275 1555 1555 1.34
LINK SG CYS B 276 C KZ0 B 303 1555 1555 1.86
LINK C LEU B 277 N 0JY B 278 1555 1555 1.35
LINK C 0JY B 278 N CY3 B 279 1555 1555 1.34
LINK SG CY3 B 279 C4 KZ0 B 303 1555 1555 1.87
CRYST1 44.163 55.692 82.718 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022643 0.000000 0.000000 0.00000
SCALE2 0.000000 0.017956 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012089 0.00000