HEADER RNA BINDING PROTEIN 19-MAR-22 7Z93 TITLE CRYSTAL STRUCTURE OF YTHDF2 WITH COMPOUND YLI_DF_022 COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING FAMILY PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-14,HIGH-GLUCOSE-REGULATED PROTEIN COMPND 5 8,RENAL CARCINOMA ANTIGEN NY-REN-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YTHDF2, HGRG8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPITRANSCRIPTOMIC READER, M6A READER, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.NAI,Y.LI,A.CAFLISCH REVDAT 3 31-JAN-24 7Z93 1 REMARK REVDAT 2 28-SEP-22 7Z93 1 JRNL REVDAT 1 30-MAR-22 7Z93 0 JRNL AUTH F.NAI,R.NACHAWATI,F.ZALESAK,X.WANG,Y.LI,A.CAFLISCH JRNL TITL FRAGMENT LIGANDS OF THE M 6 A-RNA READER YTHDF2. JRNL REF ACS MED.CHEM.LETT. V. 13 1500 2022 JRNL REFN ISSN 1948-5875 JRNL PMID 36110386 JRNL DOI 10.1021/ACSMEDCHEMLETT.2C00303 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 58455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0900 - 5.4300 1.00 2653 143 0.2051 0.1970 REMARK 3 2 5.4200 - 4.3100 1.00 2672 141 0.1614 0.2040 REMARK 3 3 4.3000 - 3.7600 1.00 2622 137 0.1602 0.1873 REMARK 3 4 3.7600 - 3.4200 1.00 2659 144 0.1823 0.1657 REMARK 3 5 3.4200 - 3.1700 1.00 2652 140 0.2034 0.2426 REMARK 3 6 3.1700 - 2.9900 1.00 2644 139 0.2355 0.2355 REMARK 3 7 2.9900 - 2.8400 1.00 2655 140 0.2230 0.3247 REMARK 3 8 2.8400 - 2.7100 1.00 2662 141 0.2461 0.2596 REMARK 3 9 2.7100 - 2.6100 1.00 2658 140 0.2521 0.2951 REMARK 3 10 2.6100 - 2.5200 1.00 2623 139 0.2474 0.2852 REMARK 3 11 2.5200 - 2.4400 1.00 2631 139 0.2526 0.2800 REMARK 3 12 2.4400 - 2.3700 1.00 2631 140 0.2314 0.3104 REMARK 3 13 2.3700 - 2.3100 0.99 2675 139 0.2349 0.2853 REMARK 3 14 2.3100 - 2.2500 1.00 2644 140 0.2418 0.3138 REMARK 3 15 2.2500 - 2.2000 1.00 2680 141 0.2380 0.3213 REMARK 3 16 2.2000 - 2.1500 0.99 2620 139 0.2426 0.3263 REMARK 3 17 2.1500 - 2.1100 1.00 2642 138 0.2613 0.3232 REMARK 3 18 2.1100 - 2.0700 0.99 2625 139 0.2598 0.2538 REMARK 3 19 2.0700 - 2.0300 0.99 2677 138 0.2642 0.3185 REMARK 3 20 2.0300 - 2.0000 0.99 2588 137 0.2672 0.3372 REMARK 3 21 2.0000 - 1.9700 0.99 2612 136 0.2891 0.3388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.785 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2478 REMARK 3 ANGLE : 0.877 3363 REMARK 3 CHIRALITY : 0.063 348 REMARK 3 PLANARITY : 0.008 428 REMARK 3 DIHEDRAL : 6.861 330 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Z93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292121805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 44.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.670 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.05 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC PH 5.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.80667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.90333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.85500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.95167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.75833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 386 REMARK 465 GLY A 387 REMARK 465 SER A 388 REMARK 465 SER A 389 REMARK 465 TYR A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 SER A 397 REMARK 465 SER A 398 REMARK 465 GLY A 399 REMARK 465 LYS A 490 REMARK 465 HIS A 549 REMARK 465 THR A 550 REMARK 465 THR A 551 REMARK 465 SER A 552 REMARK 465 MET B 386 REMARK 465 GLY B 387 REMARK 465 SER B 388 REMARK 465 SER B 389 REMARK 465 TYR B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 SER B 397 REMARK 465 SER B 398 REMARK 465 GLY B 399 REMARK 465 HIS B 549 REMARK 465 THR B 550 REMARK 465 THR B 551 REMARK 465 SER B 552 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 400 OE1 OE2 REMARK 470 GLN A 405 CG CD OE1 NE2 REMARK 470 HIS A 406 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 407 CG SD CE REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 GLU A 436 CD OE1 OE2 REMARK 470 LYS A 440 CE NZ REMARK 470 LYS A 452 CD CE NZ REMARK 470 ASP A 489 OD1 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 ARG A 498 CD NE CZ NH1 NH2 REMARK 470 LYS A 503 CE NZ REMARK 470 ARG A 527 CZ NH1 NH2 REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 GLU B 400 CG CD OE1 OE2 REMARK 470 ASN B 401 CG OD1 ND2 REMARK 470 LEU B 402 CG CD1 CD2 REMARK 470 GLN B 405 CD OE1 NE2 REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 ARG B 425 NH1 REMARK 470 GLU B 436 CG CD OE1 OE2 REMARK 470 HIS B 437 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 440 CD CE NZ REMARK 470 ARG B 447 NH1 REMARK 470 ASN B 450 CG OD1 ND2 REMARK 470 LYS B 452 CG CD CE NZ REMARK 470 LYS B 490 CD CE NZ REMARK 470 LYS B 492 CD CE NZ REMARK 470 ARG B 498 NE CZ NH1 NH2 REMARK 470 ARG B 527 NE CZ NH1 NH2 REMARK 470 LYS B 538 CD CE NZ REMARK 470 LYS B 542 NZ REMARK 470 LYS B 548 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 434 -168.27 -112.72 REMARK 500 MET B 407 59.73 -140.28 REMARK 500 SER B 434 -167.75 -105.30 REMARK 500 LYS B 490 10.46 -65.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 7Z93 A 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552 DBREF 7Z93 B 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552 SEQADV 7Z93 MET A 386 UNP Q9Y5A9 INITIATING METHIONINE SEQADV 7Z93 GLY A 387 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER A 388 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER A 389 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 TYR A 390 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS A 391 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS A 392 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS A 393 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS A 394 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS A 395 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS A 396 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER A 397 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER A 398 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 GLY A 399 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 GLU A 400 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 ASN A 401 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 LEU A 402 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 TYR A 403 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 PHE A 404 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 GLN A 405 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS A 406 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 MET A 407 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 MET B 386 UNP Q9Y5A9 INITIATING METHIONINE SEQADV 7Z93 GLY B 387 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER B 388 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER B 389 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 TYR B 390 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS B 391 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS B 392 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS B 393 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS B 394 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS B 395 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS B 396 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER B 397 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 SER B 398 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 GLY B 399 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 GLU B 400 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 ASN B 401 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 LEU B 402 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 TYR B 403 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 PHE B 404 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 GLN B 405 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 HIS B 406 UNP Q9Y5A9 EXPRESSION TAG SEQADV 7Z93 MET B 407 UNP Q9Y5A9 EXPRESSION TAG SEQRES 1 A 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG SEQRES 3 A 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS SEQRES 4 A 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS SEQRES 5 A 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN SEQRES 6 A 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY SEQRES 7 A 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA SEQRES 8 A 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP SEQRES 9 A 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL SEQRES 10 A 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU SEQRES 11 A 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP SEQRES 12 A 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU SEQRES 13 A 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER SEQRES 1 B 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 B 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG SEQRES 3 B 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS SEQRES 4 B 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS SEQRES 5 B 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN SEQRES 6 B 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY SEQRES 7 B 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA SEQRES 8 B 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP SEQRES 9 B 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL SEQRES 10 B 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU SEQRES 11 B 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP SEQRES 12 B 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU SEQRES 13 B 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER HET CL A 601 1 HET SO4 A 602 5 HET SO4 A 603 5 HET CL A 604 1 HET SO4 A 605 5 HET IHF A 606 11 HET SO4 B 601 5 HET SO4 B 602 5 HET SO4 B 603 5 HET IHF B 604 11 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM IHF 5-AZANYL-6-ETHYL-1H-PYRIMIDINE-2,4-DIONE FORMUL 3 CL 2(CL 1-) FORMUL 4 SO4 6(O4 S 2-) FORMUL 8 IHF 2(C6 H9 N3 O2) FORMUL 13 HOH *82(H2 O) HELIX 1 AA1 TYR A 403 MET A 407 5 5 HELIX 2 AA2 SER A 419 ASN A 430 1 12 HELIX 3 AA3 THR A 435 ASN A 450 1 16 HELIX 4 AA4 SER A 508 LEU A 510 5 3 HELIX 5 AA5 PRO A 522 SER A 526 5 5 HELIX 6 AA6 PRO A 533 TYR A 547 1 15 HELIX 7 AA7 SER B 419 ASN B 430 1 12 HELIX 8 AA8 THR B 435 ASN B 450 1 16 HELIX 9 AA9 SER B 508 LEU B 510 5 3 HELIX 10 AB1 PRO B 522 SER B 526 5 5 HELIX 11 AB2 PRO B 533 TYR B 547 1 15 SHEET 1 AA1 6 ILE A 431 TRP A 432 0 SHEET 2 AA1 6 PHE A 495 PRO A 506 -1 O PHE A 495 N TRP A 432 SHEET 3 AA1 6 HIS A 466 MET A 473 -1 N VAL A 470 O PHE A 501 SHEET 4 AA1 6 VAL A 455 VAL A 461 -1 N LEU A 457 O ALA A 471 SHEET 5 AA1 6 ARG A 411 SER A 417 1 N ILE A 415 O LEU A 458 SHEET 6 AA1 6 GLU A 531 VAL A 532 -1 O VAL A 532 N VAL A 412 SHEET 1 AA2 6 ILE B 431 TRP B 432 0 SHEET 2 AA2 6 PHE B 495 PRO B 506 -1 O PHE B 495 N TRP B 432 SHEET 3 AA2 6 HIS B 466 MET B 473 -1 N VAL B 470 O ILE B 500 SHEET 4 AA2 6 VAL B 455 VAL B 461 -1 N LEU B 457 O ALA B 471 SHEET 5 AA2 6 ARG B 411 SER B 417 1 N ILE B 415 O LEU B 458 SHEET 6 AA2 6 GLU B 531 VAL B 532 -1 O VAL B 532 N VAL B 412 CRYST1 80.640 80.640 113.710 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012401 0.007160 0.000000 0.00000 SCALE2 0.000000 0.014319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008794 0.00000 TER 1189 LYS A 548 TER 2371 LYS B 548 HETATM 2372 CL CL A 601 38.135 -4.939 -8.908 1.00 70.53 CL HETATM 2373 S SO4 A 602 40.447 11.259 4.628 1.00 52.34 S HETATM 2374 O1 SO4 A 602 40.834 10.080 3.869 1.00 41.97 O HETATM 2375 O2 SO4 A 602 40.003 12.270 3.666 1.00 49.13 O HETATM 2376 O3 SO4 A 602 39.333 10.963 5.541 1.00 42.50 O HETATM 2377 O4 SO4 A 602 41.597 11.727 5.403 1.00 51.95 O HETATM 2378 S SO4 A 603 30.126 23.812 -10.174 1.00 67.44 S HETATM 2379 O1 SO4 A 603 30.836 23.471 -11.408 1.00 58.95 O HETATM 2380 O2 SO4 A 603 29.540 25.137 -10.340 1.00 67.34 O HETATM 2381 O3 SO4 A 603 31.058 23.824 -9.041 1.00 58.59 O HETATM 2382 O4 SO4 A 603 29.046 22.855 -9.916 1.00 51.38 O HETATM 2383 CL CL A 604 43.367 15.510 1.218 1.00 74.72 CL HETATM 2384 S SO4 A 605 32.280 10.550 9.377 1.00 46.39 S HETATM 2385 O1 SO4 A 605 33.421 10.250 8.518 1.00 45.99 O HETATM 2386 O2 SO4 A 605 31.145 10.939 8.551 1.00 45.11 O HETATM 2387 O3 SO4 A 605 32.620 11.628 10.309 1.00 60.19 O HETATM 2388 O4 SO4 A 605 31.909 9.378 10.177 1.00 56.03 O HETATM 2389 C01 IHF A 606 29.991 -1.217 10.113 1.00 34.91 C HETATM 2390 C02 IHF A 606 30.645 -0.530 8.912 1.00 36.46 C HETATM 2391 C03 IHF A 606 30.739 0.964 9.184 1.00 34.86 C HETATM 2392 C04 IHF A 606 32.001 1.547 9.747 1.00 31.40 C HETATM 2393 C06 IHF A 606 32.067 3.011 10.051 1.00 36.83 C HETATM 2394 C09 IHF A 606 29.665 3.269 9.160 1.00 35.09 C HETATM 2395 N05 IHF A 606 33.140 0.710 10.066 1.00 37.65 N HETATM 2396 N08 IHF A 606 30.905 3.838 9.743 1.00 36.82 N HETATM 2397 N11 IHF A 606 29.592 1.808 8.867 1.00 31.46 N HETATM 2398 O07 IHF A 606 33.055 3.494 10.532 1.00 26.16 O HETATM 2399 O10 IHF A 606 28.747 3.993 8.945 1.00 30.32 O HETATM 2400 S SO4 B 601 38.546 7.504 18.707 1.00 55.21 S HETATM 2401 O1 SO4 B 601 39.388 7.458 17.499 1.00 41.85 O HETATM 2402 O2 SO4 B 601 37.127 7.622 18.376 1.00 39.72 O HETATM 2403 O3 SO4 B 601 38.688 6.277 19.502 1.00 46.81 O HETATM 2404 O4 SO4 B 601 38.987 8.640 19.541 1.00 47.72 O HETATM 2405 S SO4 B 602 48.772 21.159 32.689 1.00 71.74 S HETATM 2406 O1 SO4 B 602 50.177 20.990 32.292 1.00 63.05 O HETATM 2407 O2 SO4 B 602 47.966 21.542 31.529 1.00 63.82 O HETATM 2408 O3 SO4 B 602 48.263 19.895 33.211 1.00 66.68 O HETATM 2409 O4 SO4 B 602 48.667 22.168 33.749 1.00 62.97 O HETATM 2410 S SO4 B 603 47.052 8.370 12.316 1.00 71.94 S HETATM 2411 O1 SO4 B 603 48.272 7.668 11.891 1.00 62.39 O HETATM 2412 O2 SO4 B 603 45.913 7.923 11.502 1.00 67.11 O HETATM 2413 O3 SO4 B 603 46.771 8.072 13.732 1.00 33.87 O HETATM 2414 O4 SO4 B 603 47.245 9.811 12.111 1.00 60.43 O HETATM 2415 C01 IHF B 604 50.211 -3.365 11.680 1.00 26.09 C HETATM 2416 C02 IHF B 604 49.322 -2.897 12.826 1.00 24.68 C HETATM 2417 C03 IHF B 604 49.004 -1.415 12.677 1.00 22.29 C HETATM 2418 C04 IHF B 604 47.642 -0.932 12.300 1.00 23.00 C HETATM 2419 C06 IHF B 604 47.392 0.530 12.145 1.00 27.57 C HETATM 2420 C09 IHF B 604 49.830 0.987 12.743 1.00 26.89 C HETATM 2421 N05 IHF B 604 46.543 -1.852 12.058 1.00 22.09 N HETATM 2422 N08 IHF B 604 48.474 1.464 12.380 1.00 26.57 N HETATM 2423 N11 IHF B 604 50.079 -0.468 12.888 1.00 28.10 N HETATM 2424 O07 IHF B 604 46.310 0.925 11.831 1.00 26.98 O HETATM 2425 O10 IHF B 604 50.710 1.760 12.907 1.00 28.19 O HETATM 2426 O HOH A 701 15.860 7.263 -5.308 1.00 38.97 O HETATM 2427 O HOH A 702 13.276 -6.285 11.333 1.00 48.10 O HETATM 2428 O HOH A 703 34.084 19.517 -11.437 1.00 33.99 O HETATM 2429 O HOH A 704 26.522 7.825 9.080 1.00 33.97 O HETATM 2430 O HOH A 705 21.750 -8.234 3.679 1.00 41.27 O HETATM 2431 O HOH A 706 41.030 -3.199 4.356 1.00 39.14 O HETATM 2432 O HOH A 707 19.880 10.788 -9.982 1.00 38.12 O HETATM 2433 O HOH A 708 14.132 -1.308 4.860 1.00 36.81 O HETATM 2434 O HOH A 709 25.216 -6.144 9.914 1.00 32.77 O HETATM 2435 O HOH A 710 20.744 1.023 11.994 1.00 31.49 O HETATM 2436 O HOH A 711 41.920 1.968 2.940 1.00 35.29 O HETATM 2437 O HOH A 712 33.091 -0.867 13.090 1.00 37.29 O HETATM 2438 O HOH A 713 33.245 -8.422 -3.303 1.00 32.03 O HETATM 2439 O HOH A 714 38.197 -9.046 1.667 1.00 31.45 O HETATM 2440 O HOH A 715 29.766 15.661 4.208 1.00 25.10 O HETATM 2441 O HOH A 716 32.942 7.073 9.564 1.00 33.66 O HETATM 2442 O HOH A 717 23.410 11.233 -6.179 1.00 31.72 O HETATM 2443 O HOH A 718 24.113 -8.450 10.885 1.00 32.46 O HETATM 2444 O HOH A 719 41.351 -0.516 -2.444 1.00 33.36 O HETATM 2445 O HOH A 720 19.113 0.438 -7.628 1.00 34.48 O HETATM 2446 O HOH A 721 41.849 -4.687 8.233 1.00 37.19 O HETATM 2447 O HOH A 722 20.478 14.357 -1.102 1.00 29.66 O HETATM 2448 O HOH A 723 21.744 -0.217 -6.900 1.00 31.23 O HETATM 2449 O HOH A 724 31.923 17.509 4.785 1.00 33.96 O HETATM 2450 O HOH A 725 24.824 17.848 1.814 1.00 30.59 O HETATM 2451 O HOH A 726 28.462 3.818 6.278 1.00 24.05 O HETATM 2452 O HOH A 727 38.766 -1.987 13.263 1.00 29.46 O HETATM 2453 O HOH A 728 22.923 16.761 -11.440 1.00 40.87 O HETATM 2454 O HOH A 729 40.304 3.950 2.088 1.00 31.41 O HETATM 2455 O HOH A 730 39.323 1.235 13.394 1.00 27.87 O HETATM 2456 O HOH A 731 32.191 17.209 0.312 1.00 30.96 O HETATM 2457 O HOH A 732 44.082 2.824 6.790 1.00 43.03 O HETATM 2458 O HOH A 733 34.186 -8.299 12.556 1.00 31.71 O HETATM 2459 O HOH A 734 23.187 1.298 12.605 1.00 31.82 O HETATM 2460 O HOH A 735 28.634 -4.902 14.790 1.00 31.37 O HETATM 2461 O HOH A 736 22.501 -5.297 14.141 1.00 37.09 O HETATM 2462 O HOH A 737 21.375 -12.091 11.127 1.00 32.25 O HETATM 2463 O HOH A 738 31.109 -8.370 -5.679 1.00 35.10 O HETATM 2464 O HOH A 739 15.546 -5.525 -0.871 1.00 39.81 O HETATM 2465 O HOH A 740 22.017 15.352 -9.105 1.00 29.89 O HETATM 2466 O HOH A 741 22.817 7.891 13.722 1.00 39.31 O HETATM 2467 O HOH A 742 33.994 1.669 13.256 1.00 28.87 O HETATM 2468 O HOH A 743 26.812 7.320 -13.603 1.00 39.35 O HETATM 2469 O HOH B 701 64.669 2.813 13.622 1.00 38.71 O HETATM 2470 O HOH B 702 35.390 11.331 22.515 1.00 43.74 O HETATM 2471 O HOH B 703 53.327 -6.370 5.389 1.00 36.49 O HETATM 2472 O HOH B 704 59.688 -8.940 17.409 1.00 36.90 O HETATM 2473 O HOH B 705 51.837 21.917 21.635 1.00 40.20 O HETATM 2474 O HOH B 706 57.022 10.074 27.364 1.00 31.35 O HETATM 2475 O HOH B 707 40.155 -4.286 25.170 1.00 37.56 O HETATM 2476 O HOH B 708 55.272 -7.703 11.562 1.00 28.74 O HETATM 2477 O HOH B 709 40.000 0.718 21.298 1.00 24.37 O HETATM 2478 O HOH B 710 56.662 -9.817 10.133 1.00 35.15 O HETATM 2479 O HOH B 711 51.152 -7.222 6.849 1.00 32.47 O HETATM 2480 O HOH B 712 52.226 6.228 12.543 1.00 31.53 O HETATM 2481 O HOH B 713 46.814 -11.116 10.051 1.00 29.23 O HETATM 2482 O HOH B 714 51.326 1.981 15.419 1.00 25.65 O HETATM 2483 O HOH B 715 66.123 -1.185 14.750 1.00 39.92 O HETATM 2484 O HOH B 716 46.458 -4.282 8.630 1.00 34.91 O HETATM 2485 O HOH B 717 55.631 -0.113 8.600 1.00 31.12 O HETATM 2486 O HOH B 718 36.079 1.890 14.899 1.00 33.33 O HETATM 2487 O HOH B 719 45.599 -9.196 11.596 1.00 32.80 O HETATM 2488 O HOH B 720 60.234 -1.102 27.648 1.00 34.88 O HETATM 2489 O HOH B 721 46.414 14.596 22.205 1.00 33.46 O HETATM 2490 O HOH B 722 58.565 0.063 9.008 1.00 33.91 O HETATM 2491 O HOH B 723 38.623 11.519 19.623 1.00 39.08 O HETATM 2492 O HOH B 724 48.586 13.552 17.950 1.00 26.18 O HETATM 2493 O HOH B 725 56.902 -11.534 21.213 1.00 40.60 O HETATM 2494 O HOH B 726 54.883 13.103 19.988 1.00 37.94 O HETATM 2495 O HOH B 727 56.203 15.278 21.686 1.00 35.68 O HETATM 2496 O HOH B 728 45.559 16.378 33.744 1.00 40.38 O HETATM 2497 O HOH B 729 45.507 17.596 31.677 1.00 32.75 O HETATM 2498 O HOH B 730 58.493 13.912 22.177 1.00 29.93 O HETATM 2499 O HOH B 731 44.509 -2.895 8.215 1.00 41.55 O HETATM 2500 O HOH B 732 41.744 -4.609 35.496 1.00 41.84 O HETATM 2501 O HOH B 733 44.948 -1.107 9.704 1.00 30.98 O HETATM 2502 O HOH B 734 59.927 -13.082 10.031 1.00 31.24 O HETATM 2503 O HOH B 735 33.265 7.588 26.059 1.00 33.92 O HETATM 2504 O HOH B 736 57.835 14.326 30.228 1.00 30.54 O HETATM 2505 O HOH B 737 46.617 -5.123 1.317 1.00 44.77 O HETATM 2506 O HOH B 738 41.492 2.469 43.218 1.00 53.36 O HETATM 2507 O HOH B 739 55.051 -3.747 35.867 1.00 46.16 O CONECT 2373 2374 2375 2376 2377 CONECT 2374 2373 CONECT 2375 2373 CONECT 2376 2373 CONECT 2377 2373 CONECT 2378 2379 2380 2381 2382 CONECT 2379 2378 CONECT 2380 2378 CONECT 2381 2378 CONECT 2382 2378 CONECT 2384 2385 2386 2387 2388 CONECT 2385 2384 CONECT 2386 2384 CONECT 2387 2384 CONECT 2388 2384 CONECT 2389 2390 CONECT 2390 2389 2391 CONECT 2391 2390 2392 2397 CONECT 2392 2391 2393 2395 CONECT 2393 2392 2396 2398 CONECT 2394 2396 2397 2399 CONECT 2395 2392 CONECT 2396 2393 2394 CONECT 2397 2391 2394 CONECT 2398 2393 CONECT 2399 2394 CONECT 2400 2401 2402 2403 2404 CONECT 2401 2400 CONECT 2402 2400 CONECT 2403 2400 CONECT 2404 2400 CONECT 2405 2406 2407 2408 2409 CONECT 2406 2405 CONECT 2407 2405 CONECT 2408 2405 CONECT 2409 2405 CONECT 2410 2411 2412 2413 2414 CONECT 2411 2410 CONECT 2412 2410 CONECT 2413 2410 CONECT 2414 2410 CONECT 2415 2416 CONECT 2416 2415 2417 CONECT 2417 2416 2418 2423 CONECT 2418 2417 2419 2421 CONECT 2419 2418 2422 2424 CONECT 2420 2422 2423 2425 CONECT 2421 2418 CONECT 2422 2419 2420 CONECT 2423 2417 2420 CONECT 2424 2419 CONECT 2425 2420 MASTER 327 0 10 11 12 0 0 6 2464 2 52 26 END