HEADER IMMUNE SYSTEM 22-MAR-22 7ZAK TITLE CRYSTAL STRUCTURE OF HLA-DP (DPA1*02:01-DPB1*01:01) IN COMPLEX WITH A TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS II HLA-DP ALPHA CHAIN (DPA1*02:01); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MHC CLASS II HLA-DP BETA CHAIN (DPB1*01:01); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SYNTHETIC PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: HLA-DPA1; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER S2; SOURCE 8 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1963; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HLA-DPB1; SOURCE 13 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER S2; SOURCE 16 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1963; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 9606 KEYWDS HLA CLASS II, HUMAN LEUKOCYTE ANTIGEN CLASS II, MHC CLASS II, MAJOR KEYWDS 2 HISTOCOMPATIBILITY COMPLEX CLASS II, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.RACLE,P.GUILLAUME,A.LARABI,K.LAU,F.POJER,D.GFELLER REVDAT 5 07-FEB-24 7ZAK 1 REMARK REVDAT 4 21-JUN-23 7ZAK 1 JRNL REVDAT 3 19-APR-23 7ZAK 1 JRNL REVDAT 2 12-APR-23 7ZAK 1 JRNL REVDAT 1 29-MAR-23 7ZAK 0 JRNL AUTH J.RACLE,P.GUILLAUME,J.SCHMIDT,J.MICHAUX,A.LARABI,K.LAU, JRNL AUTH 2 M.A.S.PEREZ,G.CROCE,R.GENOLET,G.COUKOS,V.ZOETE,F.POJER, JRNL AUTH 3 M.BASSANI-STERNBERG,A.HARARI,D.GFELLER JRNL TITL MACHINE LEARNING PREDICTIONS OF MHC-II SPECIFICITIES REVEAL JRNL TITL 2 ALTERNATIVE BINDING MODE OF CLASS II EPITOPES. JRNL REF IMMUNITY V. 56 1359 2023 JRNL REFN ISSN 1074-7613 JRNL PMID 37023751 JRNL DOI 10.1016/J.IMMUNI.2023.03.009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1100 - 4.5300 1.00 2858 150 0.2056 0.1877 REMARK 3 2 4.5300 - 3.6000 1.00 2720 144 0.1804 0.2135 REMARK 3 3 3.6000 - 3.1400 1.00 2703 142 0.1824 0.2130 REMARK 3 4 3.1400 - 2.8500 1.00 2676 140 0.1998 0.2478 REMARK 3 5 2.8500 - 2.6500 1.00 2682 142 0.1963 0.2180 REMARK 3 6 2.6500 - 2.4900 1.00 2657 139 0.2000 0.2119 REMARK 3 7 2.4900 - 2.3700 1.00 2638 139 0.2083 0.2551 REMARK 3 8 2.3700 - 2.2700 1.00 2648 140 0.2006 0.2397 REMARK 3 9 2.2700 - 2.1800 1.00 2656 140 0.2061 0.2398 REMARK 3 10 2.1800 - 2.1000 1.00 2614 136 0.2135 0.2827 REMARK 3 11 2.1000 - 2.0400 1.00 2651 140 0.2087 0.2112 REMARK 3 12 2.0400 - 1.9800 1.00 2620 138 0.2108 0.2778 REMARK 3 13 1.9800 - 1.9300 1.00 2641 139 0.2095 0.2298 REMARK 3 14 1.9300 - 1.8800 1.00 2626 139 0.2196 0.2715 REMARK 3 15 1.8800 - 1.8400 1.00 2611 137 0.2328 0.2697 REMARK 3 16 1.8400 - 1.8000 1.00 2622 138 0.2700 0.2851 REMARK 3 17 1.8000 - 1.7600 1.00 2631 139 0.2811 0.3507 REMARK 3 18 1.7600 - 1.7300 1.00 2620 138 0.2871 0.3362 REMARK 3 19 1.7300 - 1.7000 1.00 2606 137 0.2767 0.3105 REMARK 3 20 1.7000 - 1.6700 1.00 2629 138 0.2904 0.3204 REMARK 3 21 1.6700 - 1.6400 1.00 2582 136 0.3035 0.3430 REMARK 3 22 1.6400 - 1.6200 0.94 2506 132 0.3360 0.3248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.217 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3244 REMARK 3 ANGLE : 1.046 4397 REMARK 3 CHIRALITY : 0.072 466 REMARK 3 PLANARITY : 0.009 573 REMARK 3 DIHEDRAL : 8.307 442 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292121632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 48.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M SODIUM CACODYLATE, PH 6.5, 15 % W/V PEG 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.98850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.34100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.98850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.34100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -4 REMARK 465 SER A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 182 REMARK 465 PRO A 183 REMARK 465 ILE A 184 REMARK 465 GLN A 185 REMARK 465 MET A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 188 REMARK 465 THR A 189 REMARK 465 THR A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 SER A 193 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 GLY A 196 REMARK 465 HIS A 197 REMARK 465 GLY A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 THR A 201 REMARK 465 THR A 202 REMARK 465 ALA A 203 REMARK 465 PRO A 204 REMARK 465 SER A 205 REMARK 465 ALA A 206 REMARK 465 GLN A 207 REMARK 465 LEU A 208 REMARK 465 GLU A 209 REMARK 465 LYS A 210 REMARK 465 GLU A 211 REMARK 465 LEU A 212 REMARK 465 GLN A 213 REMARK 465 ALA A 214 REMARK 465 LEU A 215 REMARK 465 GLU A 216 REMARK 465 LYS A 217 REMARK 465 GLU A 218 REMARK 465 ASN A 219 REMARK 465 ALA A 220 REMARK 465 GLN A 221 REMARK 465 LEU A 222 REMARK 465 GLU A 223 REMARK 465 TRP A 224 REMARK 465 GLU A 225 REMARK 465 LEU A 226 REMARK 465 GLN A 227 REMARK 465 ALA A 228 REMARK 465 LEU A 229 REMARK 465 GLU A 230 REMARK 465 LYS A 231 REMARK 465 GLU A 232 REMARK 465 LEU A 233 REMARK 465 ALA A 234 REMARK 465 GLN A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 GLY A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 GLY A 248 REMARK 465 GLY A 249 REMARK 465 GLY A 250 REMARK 465 SER A 251 REMARK 465 GLY A 252 REMARK 465 GLY A 253 REMARK 465 GLY A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 LEU B -1 REMARK 465 GLU B 0 REMARK 465 ARG B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 103 REMARK 465 LYS B 104 REMARK 465 GLY B 105 REMARK 465 PRO B 106 REMARK 465 LEU B 107 REMARK 465 GLN B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 GLN B 189 REMARK 465 SER B 190 REMARK 465 ASP B 191 REMARK 465 SER B 192 REMARK 465 ALA B 193 REMARK 465 GLN B 194 REMARK 465 SER B 195 REMARK 465 LYS B 196 REMARK 465 GLY B 197 REMARK 465 SER B 198 REMARK 465 GLY B 199 REMARK 465 GLY B 200 REMARK 465 GLY B 201 REMARK 465 SER B 202 REMARK 465 GLY B 203 REMARK 465 GLY B 204 REMARK 465 SER B 205 REMARK 465 THR B 206 REMARK 465 THR B 207 REMARK 465 ALA B 208 REMARK 465 PRO B 209 REMARK 465 SER B 210 REMARK 465 ALA B 211 REMARK 465 GLN B 212 REMARK 465 LEU B 213 REMARK 465 LYS B 214 REMARK 465 LYS B 215 REMARK 465 LYS B 216 REMARK 465 LEU B 217 REMARK 465 GLN B 218 REMARK 465 ALA B 219 REMARK 465 LEU B 220 REMARK 465 LYS B 221 REMARK 465 LYS B 222 REMARK 465 LYS B 223 REMARK 465 ASN B 224 REMARK 465 ALA B 225 REMARK 465 GLN B 226 REMARK 465 LEU B 227 REMARK 465 LYS B 228 REMARK 465 TRP B 229 REMARK 465 LYS B 230 REMARK 465 LEU B 231 REMARK 465 GLN B 232 REMARK 465 ALA B 233 REMARK 465 LEU B 234 REMARK 465 LYS B 235 REMARK 465 LYS B 236 REMARK 465 LYS B 237 REMARK 465 LEU B 238 REMARK 465 ALA B 239 REMARK 465 GLN B 240 REMARK 465 GLY B 241 REMARK 465 GLY B 242 REMARK 465 SER B 243 REMARK 465 GLY B 244 REMARK 465 GLY B 245 REMARK 465 GLY B 246 REMARK 465 LEU B 247 REMARK 465 ASN B 248 REMARK 465 ASP B 249 REMARK 465 ILE B 250 REMARK 465 PHE B 251 REMARK 465 GLU B 252 REMARK 465 ALA B 253 REMARK 465 GLN B 254 REMARK 465 LYS B 255 REMARK 465 ILE B 256 REMARK 465 GLU B 257 REMARK 465 TRP B 258 REMARK 465 HIS B 259 REMARK 465 GLU B 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 31 -108.44 55.97 REMARK 500 VAL B 87 -75.03 -136.91 REMARK 500 ASN C 2 -173.06 -57.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZAK A -4 263 PDB 7ZAK 7ZAK -4 263 DBREF 7ZAK B -1 260 PDB 7ZAK 7ZAK -1 260 DBREF 7ZAK C 1 15 PDB 7ZAK 7ZAK 1 15 SEQRES 1 A 268 ARG SER ALA GLY ALA ILE LYS ALA ASP HIS VAL SER THR SEQRES 2 A 268 TYR ALA ALA PHE VAL GLN THR HIS ARG PRO THR GLY GLU SEQRES 3 A 268 PHE MET PHE GLU PHE ASP GLU ASP GLU GLN PHE TYR VAL SEQRES 4 A 268 ASP LEU ASP LYS LYS GLU THR VAL TRP HIS LEU GLU GLU SEQRES 5 A 268 PHE GLY ARG ALA PHE SER PHE GLU ALA GLN GLY GLY LEU SEQRES 6 A 268 ALA ASN ILE ALA ILE LEU ASN ASN ASN LEU ASN THR LEU SEQRES 7 A 268 ILE GLN ARG SER ASN HIS THR GLN ALA ALA ASN ASP PRO SEQRES 8 A 268 PRO GLU VAL THR VAL PHE PRO LYS GLU PRO VAL GLU LEU SEQRES 9 A 268 GLY GLN PRO ASN THR LEU ILE CYS HIS ILE ASP ARG PHE SEQRES 10 A 268 PHE PRO PRO VAL LEU ASN VAL THR TRP LEU CYS ASN GLY SEQRES 11 A 268 GLU PRO VAL THR GLU GLY VAL ALA GLU SER LEU PHE LEU SEQRES 12 A 268 PRO ARG THR ASP TYR SER PHE HIS LYS PHE HIS TYR LEU SEQRES 13 A 268 THR PHE VAL PRO SER ALA GLU ASP VAL TYR ASP CYS ARG SEQRES 14 A 268 VAL GLU HIS TRP GLY LEU ASP GLN PRO LEU LEU LYS HIS SEQRES 15 A 268 TRP GLU ALA GLN GLU PRO ILE GLN MET PRO GLU THR THR SEQRES 16 A 268 GLU GLY SER GLY GLY GLY HIS GLY GLY SER THR THR ALA SEQRES 17 A 268 PRO SER ALA GLN LEU GLU LYS GLU LEU GLN ALA LEU GLU SEQRES 18 A 268 LYS GLU ASN ALA GLN LEU GLU TRP GLU LEU GLN ALA LEU SEQRES 19 A 268 GLU LYS GLU LEU ALA GLN GLY GLY SER GLY GLY GLY HIS SEQRES 20 A 268 HIS HIS HIS HIS HIS GLY GLY GLY SER GLY GLY GLY SER SEQRES 21 A 268 GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 262 LEU GLU ARG ALA THR PRO GLU ASN TYR VAL TYR GLN GLY SEQRES 2 B 262 ARG GLN GLU CYS TYR ALA PHE ASN GLY THR GLN ARG PHE SEQRES 3 B 262 LEU GLU ARG TYR ILE TYR ASN ARG GLU GLU TYR ALA ARG SEQRES 4 B 262 PHE ASP SER ASP VAL GLY GLU PHE ARG ALA VAL THR GLU SEQRES 5 B 262 LEU GLY ARG PRO ALA ALA GLU TYR TRP ASN SER GLN LYS SEQRES 6 B 262 ASP ILE LEU GLU GLU LYS ARG ALA VAL PRO ASP ARG VAL SEQRES 7 B 262 CYS ARG HIS ASN TYR GLU LEU ASP GLU ALA VAL THR LEU SEQRES 8 B 262 GLN ARG ARG VAL GLN PRO LYS VAL ASN VAL SER PRO SER SEQRES 9 B 262 LYS LYS GLY PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SEQRES 10 B 262 HIS VAL THR ASP PHE TYR PRO GLY SER ILE GLN VAL ARG SEQRES 11 B 262 TRP PHE LEU ASN GLY GLN GLU GLU THR ALA GLY VAL VAL SEQRES 12 B 262 SER THR ASN LEU ILE ARG ASN GLY ASP TRP THR PHE GLN SEQRES 13 B 262 ILE LEU VAL MET LEU GLU MET THR PRO GLN GLN GLY ASP SEQRES 14 B 262 VAL TYR ILE CYS GLN VAL GLU HIS THR SER LEU ASP SER SEQRES 15 B 262 PRO VAL THR VAL GLU TRP LYS ALA GLN SER ASP SER ALA SEQRES 16 B 262 GLN SER LYS GLY SER GLY GLY GLY SER GLY GLY SER THR SEQRES 17 B 262 THR ALA PRO SER ALA GLN LEU LYS LYS LYS LEU GLN ALA SEQRES 18 B 262 LEU LYS LYS LYS ASN ALA GLN LEU LYS TRP LYS LEU GLN SEQRES 19 B 262 ALA LEU LYS LYS LYS LEU ALA GLN GLY GLY SER GLY GLY SEQRES 20 B 262 GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE GLU TRP SEQRES 21 B 262 HIS GLU SEQRES 1 C 15 LYS ASN LEU GLU LYS TYR LYS GLY LYS PHE VAL ARG GLU SEQRES 2 C 15 ILE ASP HET NAG A 301 14 HET GOL A 302 14 HET GOL A 303 14 HET GOL A 304 14 HET GOL A 305 14 HET MG A 306 1 HET NAG B 301 14 HET GOL B 302 14 HET GOL B 303 14 HET GOL B 304 14 HET GOL B 305 14 HET GOL B 306 14 HET GOL B 307 14 HET MG B 308 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 GOL 10(C3 H8 O3) FORMUL 9 MG 2(MG 2+) FORMUL 18 HOH *237(H2 O) HELIX 1 AA1 LEU A 45 ALA A 51 1 7 HELIX 2 AA2 GLU A 55 SER A 77 1 23 HELIX 3 AA3 THR B 49 LEU B 51 5 3 HELIX 4 AA4 GLY B 52 SER B 61 1 10 HELIX 5 AA5 GLN B 62 VAL B 76 1 15 HELIX 6 AA6 VAL B 76 VAL B 87 1 12 HELIX 7 AA7 THR B 88 ARG B 91 5 4 SHEET 1 AA1 8 GLU A 40 TRP A 43 0 SHEET 2 AA1 8 ASP A 29 ASP A 35 -1 N ASP A 35 O GLU A 40 SHEET 3 AA1 8 GLY A 20 PHE A 26 -1 N PHE A 24 O PHE A 32 SHEET 4 AA1 8 HIS A 5 GLN A 14 -1 N THR A 8 O GLU A 25 SHEET 5 AA1 8 VAL B 8 PHE B 18 -1 O TYR B 9 N VAL A 13 SHEET 6 AA1 8 THR B 21 TYR B 30 -1 O ARG B 23 N TYR B 16 SHEET 7 AA1 8 GLU B 33 ASP B 39 -1 O GLU B 33 N TYR B 30 SHEET 8 AA1 8 PHE B 45 ALA B 47 -1 O ARG B 46 N ARG B 37 SHEET 1 AA2 2 PHE A 52 SER A 53 0 SHEET 2 AA2 2 LEU C 3 GLU C 4 1 O LEU C 3 N SER A 53 SHEET 1 AA3 4 GLU A 88 PRO A 93 0 SHEET 2 AA3 4 ASN A 103 PHE A 112 -1 O HIS A 108 N THR A 90 SHEET 3 AA3 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 AA3 4 VAL A 132 GLU A 134 -1 N ALA A 133 O TYR A 150 SHEET 1 AA4 4 GLU A 88 PRO A 93 0 SHEET 2 AA4 4 ASN A 103 PHE A 112 -1 O HIS A 108 N THR A 90 SHEET 3 AA4 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 AA4 4 LEU A 138 PRO A 139 -1 N LEU A 138 O HIS A 146 SHEET 1 AA5 4 GLU A 126 VAL A 128 0 SHEET 2 AA5 4 ASN A 118 CYS A 123 -1 N CYS A 123 O GLU A 126 SHEET 3 AA5 4 VAL A 160 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 AA5 4 LEU A 174 GLU A 179 -1 O LEU A 174 N VAL A 165 SHEET 1 AA6 4 LYS B 96 PRO B 101 0 SHEET 2 AA6 4 LEU B 112 PHE B 120 -1 O HIS B 116 N ASN B 98 SHEET 3 AA6 4 PHE B 153 GLU B 160 -1 O VAL B 157 N CYS B 115 SHEET 4 AA6 4 VAL B 140 SER B 142 -1 N VAL B 141 O MET B 158 SHEET 1 AA7 4 LYS B 96 PRO B 101 0 SHEET 2 AA7 4 LEU B 112 PHE B 120 -1 O HIS B 116 N ASN B 98 SHEET 3 AA7 4 PHE B 153 GLU B 160 -1 O VAL B 157 N CYS B 115 SHEET 4 AA7 4 ILE B 146 ARG B 147 -1 N ILE B 146 O GLN B 154 SHEET 1 AA8 4 GLN B 134 GLU B 136 0 SHEET 2 AA8 4 GLN B 126 LEU B 131 -1 N TRP B 129 O GLU B 136 SHEET 3 AA8 4 VAL B 168 GLU B 174 -1 O GLN B 172 N ARG B 128 SHEET 4 AA8 4 VAL B 182 LYS B 187 -1 O VAL B 182 N VAL B 173 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.07 SSBOND 2 CYS B 15 CYS B 77 1555 1555 2.09 SSBOND 3 CYS B 115 CYS B 171 1555 1555 2.02 LINK ND2 ASN A 118 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN B 19 C1 NAG B 301 1555 1555 1.44 LINK MG MG A 306 O HOH A 486 1555 1555 2.47 LINK OE2 GLU B 44 MG MG B 308 1555 3545 2.95 CISPEP 1 ARG A 17 PRO A 18 0 -0.94 CISPEP 2 PHE A 113 PRO A 114 0 -1.68 CISPEP 3 TYR B 121 PRO B 122 0 0.51 CRYST1 54.000 82.682 105.977 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009436 0.00000