HEADER SIGNALING PROTEIN 22-MAR-22 7ZAV TITLE GPC3-UNC5D OCTAMER STRUCTURE AND ROLE IN CELL MIGRATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYPICAN-3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GPC3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022 KEYWDS GLYCOPROTEIN, MIGRATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.AKKERMANS,C.DELLOYE-BOURGEOIS,C.PEREGRINA,M.CARRASQUERO,M.KOKOLAKI, AUTHOR 2 M.BERBEIRA-SANTANA,M.CHAVENT,F.REYNAUD,R.RITU,J.AGIRRE,M.AKSU, AUTHOR 3 E.WHITE,E.LOWE,D.BEN AMAR,S.ZABALLA,J.HUO,I.PAKOS,P.MCCUBBIN, AUTHOR 4 D.COMOLETTI,R.OWENS,C.ROBINSON,V.CASTELLANI,D.DEL TORO,E.SEIRADAKE REVDAT 2 31-JAN-24 7ZAV 1 REMARK REVDAT 1 02-NOV-22 7ZAV 0 JRNL AUTH O.AKKERMANS,C.DELLOYE-BOURGEOIS,C.PEREGRINA, JRNL AUTH 2 M.CARRASQUERO-ORDAZ,M.KOKOLAKI,M.BERBEIRA-SANTANA,M.CHAVENT, JRNL AUTH 3 F.REYNAUD,R.RAJ,J.AGIRRE,M.AKSU,E.S.WHITE,E.LOWE,D.BEN AMAR, JRNL AUTH 4 S.ZABALLA,J.HUO,I.PAKOS,P.T.N.MCCUBBIN,D.COMOLETTI, JRNL AUTH 5 R.J.OWENS,C.V.ROBINSON,V.CASTELLANI,D.DEL TORO,E.SEIRADAKE JRNL TITL GPC3-UNC5 RECEPTOR COMPLEX STRUCTURE AND ROLE IN CELL JRNL TITL 2 MIGRATION. JRNL REF CELL V. 185 3931 2022 JRNL REFN ISSN 1097-4172 JRNL PMID 36240740 JRNL DOI 10.1016/J.CELL.2022.09.025 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 68 352 2012 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9400 - 4.6000 1.00 2973 160 0.1858 0.2283 REMARK 3 2 4.6000 - 3.6500 1.00 2863 154 0.2240 0.2701 REMARK 3 3 3.6500 - 3.1900 1.00 2889 107 0.2623 0.3369 REMARK 3 4 3.1900 - 2.9000 0.99 2777 148 0.3275 0.3764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.296 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.897 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2834 REMARK 3 ANGLE : 0.662 3832 REMARK 3 CHIRALITY : 0.041 449 REMARK 3 PLANARITY : 0.005 483 REMARK 3 DIHEDRAL : 4.328 387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -18.4805 -24.6207 12.1717 REMARK 3 T TENSOR REMARK 3 T11: 0.5772 T22: 0.5649 REMARK 3 T33: 0.5378 T12: 0.0634 REMARK 3 T13: -0.0612 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.1695 L22: 2.2161 REMARK 3 L33: 0.3029 L12: -1.5307 REMARK 3 L13: 0.5759 L23: -0.9869 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: -0.2476 S13: -0.0693 REMARK 3 S21: 0.0901 S22: 0.1585 S23: 0.1567 REMARK 3 S31: -0.0547 S32: -0.1636 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292121810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96859 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 90.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4YWT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM NITRATE AND 20% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.20667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.41333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.41333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.20667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 CYS A 34 REMARK 465 HIS A 35 REMARK 465 GLN A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 465 SER A 39 REMARK 465 PHE A 40 REMARK 465 PHE A 41 REMARK 465 GLN A 42 REMARK 465 ARG A 43 REMARK 465 LEU A 44 REMARK 465 GLN A 45 REMARK 465 PRO A 46 REMARK 465 GLY A 47 REMARK 465 LEU A 48 REMARK 465 LYS A 49 REMARK 465 TRP A 50 REMARK 465 VAL A 51 REMARK 465 PRO A 52 REMARK 465 GLU A 53 REMARK 465 THR A 54 REMARK 465 PRO A 55 REMARK 465 VAL A 56 REMARK 465 PRO A 57 REMARK 465 GLY A 58 REMARK 465 LEU A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 188 REMARK 465 SER A 189 REMARK 465 VAL A 190 REMARK 465 GLY A 308 REMARK 465 MET A 309 REMARK 465 TYR A 310 REMARK 465 ARG A 311 REMARK 465 ILE A 312 REMARK 465 TYR A 313 REMARK 465 ALA A 349 REMARK 465 HIS A 350 REMARK 465 SER A 351 REMARK 465 GLN A 352 REMARK 465 GLN A 353 REMARK 465 ARG A 354 REMARK 465 GLN A 355 REMARK 465 TYR A 356 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 465 ALA A 359 REMARK 465 TYR A 360 REMARK 465 TYR A 361 REMARK 465 PRO A 362 REMARK 465 GLU A 363 REMARK 465 ASP A 364 REMARK 465 LEU A 365 REMARK 465 PHE A 366 REMARK 465 ILE A 367 REMARK 465 ASP A 368 REMARK 465 LYS A 369 REMARK 465 LYS A 370 REMARK 465 ILE A 371 REMARK 465 LEU A 372 REMARK 465 LYS A 373 REMARK 465 VAL A 374 REMARK 465 ALA A 375 REMARK 465 HIS A 376 REMARK 465 VAL A 377 REMARK 465 GLU A 378 REMARK 465 HIS A 379 REMARK 465 GLU A 380 REMARK 465 GLU A 381 REMARK 465 LYS A 434 REMARK 465 ALA A 435 REMARK 465 ALA A 436 REMARK 465 ARG A 437 REMARK 465 ASN A 438 REMARK 465 GLY A 439 REMARK 465 MET A 440 REMARK 465 LYS A 441 REMARK 465 ASN A 442 REMARK 465 GLN A 443 REMARK 465 PHE A 444 REMARK 465 ASN A 445 REMARK 465 LEU A 446 REMARK 465 HIS A 447 REMARK 465 GLU A 448 REMARK 465 LEU A 449 REMARK 465 LYS A 450 REMARK 465 MET A 451 REMARK 465 LYS A 452 REMARK 465 GLY A 453 REMARK 465 PRO A 454 REMARK 465 VAL A 477 REMARK 465 PRO A 478 REMARK 465 LYS A 479 REMARK 465 GLY A 480 REMARK 465 LYS A 481 REMARK 465 VAL A 482 REMARK 465 GLY A 483 REMARK 465 THR A 484 REMARK 465 LYS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 59 OG REMARK 470 ASP A 60 CG OD1 OD2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 430 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 433 CG CD OE1 NE2 REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 GLN A 460 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 63 -60.29 -124.70 REMARK 500 LEU A 320 30.92 -85.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZAV A 31 482 UNP Q8CFZ4 GPC3_MOUSE 31 482 SEQADV 7ZAV GLU A 28 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV THR A 29 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV GLY A 30 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV GLY A 483 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV THR A 484 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV LYS A 485 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV HIS A 486 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV HIS A 487 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV HIS A 488 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV HIS A 489 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV HIS A 490 UNP Q8CFZ4 EXPRESSION TAG SEQADV 7ZAV HIS A 491 UNP Q8CFZ4 EXPRESSION TAG SEQRES 1 A 464 GLU THR GLY ASP ALA THR CYS HIS GLN VAL ARG SER PHE SEQRES 2 A 464 PHE GLN ARG LEU GLN PRO GLY LEU LYS TRP VAL PRO GLU SEQRES 3 A 464 THR PRO VAL PRO GLY SER ASP LEU GLN VAL CYS LEU PRO SEQRES 4 A 464 LYS GLY PRO THR CYS CYS SER ARG LYS MET GLU GLU LYS SEQRES 5 A 464 TYR GLN LEU THR ALA ARG LEU ASN MET GLU GLN LEU LEU SEQRES 6 A 464 GLN SER ALA SER MET GLU LEU LYS PHE LEU ILE ILE GLN SEQRES 7 A 464 ASN ALA ALA VAL PHE GLN GLU ALA PHE GLU ILE VAL VAL SEQRES 8 A 464 ARG HIS ALA LYS ASN TYR THR ASN ALA MET PHE LYS ASN SEQRES 9 A 464 ASN TYR PRO SER LEU THR PRO GLN ALA PHE GLU PHE VAL SEQRES 10 A 464 GLY GLU PHE PHE THR ASP VAL SER LEU TYR ILE LEU GLY SEQRES 11 A 464 SER ASP ILE ASN VAL ASP ASP MET VAL ASN GLU LEU PHE SEQRES 12 A 464 ASP SER LEU PHE PRO VAL ILE TYR THR GLN MET MET ASN SEQRES 13 A 464 PRO GLY LEU PRO GLU SER VAL LEU ASP ILE ASN GLU CYS SEQRES 14 A 464 LEU ARG GLY ALA ARG ARG ASP LEU LYS VAL PHE GLY SER SEQRES 15 A 464 PHE PRO LYS LEU ILE MET THR GLN VAL SER LYS SER LEU SEQRES 16 A 464 GLN VAL THR ARG ILE PHE LEU GLN ALA LEU ASN LEU GLY SEQRES 17 A 464 ILE GLU VAL ILE ASN THR THR ASP HIS LEU LYS PHE SER SEQRES 18 A 464 LYS ASP CYS GLY ARG MET LEU THR ARG MET TRP TYR CYS SEQRES 19 A 464 SER TYR CYS GLN GLY LEU MET MET VAL LYS PRO CYS GLY SEQRES 20 A 464 GLY TYR CYS ASN VAL VAL MET GLN GLY CYS MET ALA GLY SEQRES 21 A 464 VAL VAL GLU ILE ASP LYS TYR TRP ARG GLU TYR ILE LEU SEQRES 22 A 464 SER LEU GLU GLU LEU VAL ASN GLY MET TYR ARG ILE TYR SEQRES 23 A 464 ASP MET GLU ASN VAL LEU LEU GLY LEU PHE SER THR ILE SEQRES 24 A 464 HIS ASP SER ILE GLN TYR VAL GLN LYS ASN GLY GLY LYS SEQRES 25 A 464 LEU THR THR THR ILE GLY LYS LEU CYS ALA HIS SER GLN SEQRES 26 A 464 GLN ARG GLN TYR ARG SER ALA TYR TYR PRO GLU ASP LEU SEQRES 27 A 464 PHE ILE ASP LYS LYS ILE LEU LYS VAL ALA HIS VAL GLU SEQRES 28 A 464 HIS GLU GLU THR LEU SER SER ARG ARG ARG GLU LEU ILE SEQRES 29 A 464 GLN LYS LEU LYS SER PHE ILE ASN PHE TYR SER ALA LEU SEQRES 30 A 464 PRO GLY TYR ILE CYS SER HIS SER PRO VAL ALA GLU ASN SEQRES 31 A 464 ASP THR LEU CYS TRP ASN GLY GLN GLU LEU VAL GLU ARG SEQRES 32 A 464 TYR SER GLN LYS ALA ALA ARG ASN GLY MET LYS ASN GLN SEQRES 33 A 464 PHE ASN LEU HIS GLU LEU LYS MET LYS GLY PRO GLU PRO SEQRES 34 A 464 VAL VAL SER GLN ILE ILE ASP LYS LEU LYS HIS ILE ASN SEQRES 35 A 464 GLN LEU LEU ARG THR MET SER VAL PRO LYS GLY LYS VAL SEQRES 36 A 464 GLY THR LYS HIS HIS HIS HIS HIS HIS HET NAG A1000 14 HET NAG A1001 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 AA1 ARG A 74 TYR A 133 1 60 HELIX 2 AA2 PRO A 134 THR A 137 5 4 HELIX 3 AA3 PRO A 138 LEU A 156 1 19 HELIX 4 AA4 ASN A 161 MET A 181 1 21 HELIX 5 AA5 ILE A 193 LEU A 204 1 12 HELIX 6 AA6 SER A 209 ASP A 243 1 35 HELIX 7 AA7 SER A 248 TYR A 260 1 13 HELIX 8 AA8 TYR A 260 GLN A 265 1 6 HELIX 9 AA9 CYS A 273 MET A 285 1 13 HELIX 10 AB1 MET A 285 GLU A 290 1 6 HELIX 11 AB2 ILE A 291 ASN A 307 1 17 HELIX 12 AB3 MET A 315 LEU A 320 1 6 HELIX 13 AB4 GLY A 321 LYS A 335 1 15 HELIX 14 AB5 ASN A 336 CYS A 348 1 13 HELIX 15 AB6 LEU A 383 LYS A 395 1 13 HELIX 16 AB7 SER A 396 ILE A 398 5 3 HELIX 17 AB8 ALA A 403 SER A 412 1 10 HELIX 18 AB9 PRO A 456 SER A 476 1 21 SHEET 1 AA1 2 THR A 419 TRP A 422 0 SHEET 2 AA1 2 LEU A 427 ARG A 430 -1 O VAL A 428 N CYS A 421 SSBOND 1 CYS A 64 CYS A 261 1555 1555 2.04 SSBOND 2 CYS A 72 CYS A 264 1555 1555 2.03 SSBOND 3 CYS A 196 CYS A 348 1555 1555 2.03 SSBOND 4 CYS A 251 CYS A 284 1555 1555 2.03 SSBOND 5 CYS A 273 CYS A 421 1555 1555 2.03 SSBOND 6 CYS A 277 CYS A 409 1555 1555 2.04 LINK ND2 ASN A 123 C1 NAG A1000 1555 1555 1.43 LINK ND2 ASN A 240 C1 NAG A1001 1555 1555 1.44 CISPEP 1 THR A 137 PRO A 138 0 3.32 CRYST1 100.488 100.488 90.620 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009951 0.005745 0.000000 0.00000 SCALE2 0.000000 0.011491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011035 0.00000