HEADER UNKNOWN FUNCTION 30-MAR-22 7ZE1 TITLE TRIBOLIUM CASTANEUM HEXAMERIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARVAL SERUM PROTEIN 1 GAMMA CHAIN-LIKE PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRIBOLIUM CASTANEUM; SOURCE 3 ORGANISM_COMMON: RED FLOUR BEETLE; SOURCE 4 ORGANISM_TAXID: 7070 KEYWDS HEXAMERIN, TRIBOLIUM CASTANEUM, STORAGE PROTEIN, UNKNOWN FUNCTION EXPDTA ELECTRON MICROSCOPY AUTHOR L.VALENTOVA,T.FUZIK,P.PLEVKA REVDAT 1 23-NOV-22 7ZE1 0 JRNL AUTH D.HREBIK,M.GONDOVA,L.VALENTOVA,T.FUZIK,A.PRIDAL,J.NOVACEK, JRNL AUTH 2 P.PLEVKA JRNL TITL POLYELECTROLYTE COATING OF CRYO-EM GRIDS IMPROVES LATERAL JRNL TITL 2 DISTRIBUTION AND PREVENTS AGGREGATION OF MACROMOLECULES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 1337 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 36322417 JRNL DOI 10.1107/S2059798322009299 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, COOT, PHENIX, RELION, REMARK 3 RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : CORELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 45.570 REMARK 3 REMARK 3 FITTING PROCEDURE : REAL SPACE REFINE REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 3106 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7ZE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292122091. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HEXAMERIN 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : HEXAMERIN ISOLATED FROM REMARK 245 TRIBOLIUM CASTANEUM PUPAE REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1711 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5700.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.15_B42258. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PHE A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 CYS A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 ILE A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 SER A 21 REMARK 465 GLU A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 TYR A 588 REMARK 465 ASN A 589 REMARK 465 LYS A 590 REMARK 465 ASP A 591 REMARK 465 GLN A 592 REMARK 465 HIS A 593 REMARK 465 PHE A 594 REMARK 465 HIS A 686 REMARK 465 ASN A 687 REMARK 465 TYR A 688 REMARK 465 GLU A 689 REMARK 465 HIS A 690 REMARK 465 HIS A 691 REMARK 465 ALA A 692 REMARK 465 ASN A 693 REMARK 465 HIS A 694 REMARK 465 LEU A 695 REMARK 465 ILE A 696 REMARK 465 GLU A 697 REMARK 465 MET A 698 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 211 OE2 GLU A 263 1.79 REMARK 500 OH TYR A 204 OE1 GLU A 282 1.92 REMARK 500 OG SER A 266 O ARG A 613 2.03 REMARK 500 OG SER A 266 OH TYR A 621 2.08 REMARK 500 OG SER A 511 O LYS A 554 2.08 REMARK 500 OH TYR A 570 O MET A 610 2.11 REMARK 500 O PRO A 287 OH TYR A 296 2.12 REMARK 500 O LEU A 355 OH TYR A 434 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 189 47.47 37.43 REMARK 500 TYR A 200 -60.82 -91.17 REMARK 500 LEU A 209 48.57 -87.60 REMARK 500 ASN A 244 -62.99 68.34 REMARK 500 ARG A 245 -18.41 73.73 REMARK 500 TYR A 317 -138.54 39.37 REMARK 500 GLU A 359 50.95 -93.01 REMARK 500 ILE A 571 17.91 46.43 REMARK 500 HIS A 572 137.39 -172.25 REMARK 500 TYR A 578 -16.41 76.61 REMARK 500 GLN A 600 -6.74 72.78 REMARK 500 PHE A 602 -140.39 46.74 REMARK 500 VAL A 649 -60.05 -96.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-14679 RELATED DB: EMDB REMARK 900 TRIBOLIUM CASTANEUM HEXAMERIN 2 DBREF 7ZE1 A 1 698 UNP D6WUQ9 D6WUQ9_TRICA 1 698 SEQRES 1 A 698 MET ARG PHE ILE LEU VAL ALA VAL LEU ALA GLY LEU CYS SEQRES 2 A 698 ALA VAL SER ALA ILE SER THR SER GLU SER SER ASN TYR SEQRES 3 A 698 SER GLN GLN GLN ARG ASP VAL TRP ARG LEU PHE LYS TYR SEQRES 4 A 698 ILE ASN GLN PRO SER TYR TYR LYS ASP HIS VAL GLU ILE SEQRES 5 A 698 ALA HIS SER TYR TYR PHE TYR ASP HIS ALA SER ASN TYR SEQRES 6 A 698 ALA LYS HIS GLU VAL VAL GLU GLU PHE TYR ARG TYR PHE SEQRES 7 A 698 LYS TYR ASP THR PHE LEU GLN ARG GLY GLU ILE PHE SER SEQRES 8 A 698 VAL PHE HIS GLY GLU HIS LEU LYS GLN ALA ILE ALA LEU SEQRES 9 A 698 PHE LYS LEU PHE TYR TYR ALA ASN ASP PHE ASP THR PHE SEQRES 10 A 698 TYR LYS THR ALA VAL TRP ALA ARG GLN HIS VAL ASN GLU SEQRES 11 A 698 GLY MET PHE LEU TYR ALA PHE SER VAL ALA LEU ILE HIS SEQRES 12 A 698 ARG PRO ASP THR TYR TYR PHE SER LEU PRO PRO ILE TYR SEQRES 13 A 698 GLU ILE TYR PRO HIS TYR PHE TYR ASN TYR GLU VAL ILE SEQRES 14 A 698 GLN LYS ALA GLN HIS TYR LYS GLN MET TYR TYR GLY GLN SEQRES 15 A 698 ASP GLY ALA HIS TYR ASN ASP ARG THR ILE TYR ALA ASN SEQRES 16 A 698 TYR SER GLY TYR TYR VAL ASN VAL TYR PRO GLU GLN ALA SEQRES 17 A 698 LEU ALA TYR PHE THR GLU ASP VAL GLY VAL ASN SER PHE SEQRES 18 A 698 TYR TYR TYR TYR ASN LEU TYR TYR PRO TYR TRP MET SER SEQRES 19 A 698 GLY GLU GLU PHE ASN LEU LYS TYR ASP ASN ARG GLY GLU SEQRES 20 A 698 ILE PHE TYR TYR MET TYR GLN GLN ILE LEU ALA ARG TYR SEQRES 21 A 698 TYR LEU GLU ARG LEU SER HIS GLY PHE GLY GLU ILE ASP SEQRES 22 A 698 HIS PHE ASP TRP GLU VAL PRO PHE GLU SER GLY TYR TYR SEQRES 23 A 698 PRO SER MET CYS TYR PRO ASN GLY LEU TYR PHE PRO THR SEQRES 24 A 698 ARG HIS ALA TYR ALA HIS LEU TYR GLU TYR PHE TYR ASN SEQRES 25 A 698 TYR GLY GLN HIS TYR GLY PHE ASN LYS TYR ALA HIS SER SEQRES 26 A 698 TYR THR HIS ILE SER ASP TYR GLU ARG ARG ILE HIS ASP SEQRES 27 A 698 VAL ILE ASP SER GLY TYR VAL HIS THR HIS SER GLY GLN SEQRES 28 A 698 LYS VAL ASP LEU PHE SER HIS GLU GLY LEU ASP ILE LEU SEQRES 29 A 698 GLY ASN LEU ILE GLU GLY ASN PRO GLU SER PRO TYR TYR SEQRES 30 A 698 HIS TYR TYR GLY ALA TYR GLN VAL PHE ALA ARG HIS LEU SEQRES 31 A 698 LEU GLY TYR SER HIS GLN PRO LEU THR PHE HIS LYS LEU SEQRES 32 A 698 HIS PRO SER ALA LEU GLU HIS PHE GLU THR SER MET ARG SEQRES 33 A 698 ASP PRO ALA PHE TYR GLN LEU TYR LYS LYS LEU LEU GLY SEQRES 34 A 698 PHE PHE PHE ARG TYR LYS SER GLN HIS TYR HIS TYR TYR SEQRES 35 A 698 ASP GLU HIS ASP LEU ALA TYR HIS GLY VAL HIS VAL LYS SEQRES 36 A 698 HIS VAL GLU VAL ASP PRO LEU VAL THR TYR PHE ASP TYR SEQRES 37 A 698 PHE TYR ALA ASP LEU SER ASN ALA VAL TYR VAL THR PRO SEQRES 38 A 698 GLU GLU PHE VAL HIS ASP SER PHE LYS VAL HIS VAL ALA SEQRES 39 A 698 GLN GLU ARG LEU ASN HIS LYS PRO PHE THR TYR LYS ILE SEQRES 40 A 698 TYR ILE ASP SER ASP LYS ASP THR GLU ALA VAL VAL LYS SEQRES 41 A 698 VAL PHE LEU GLY PRO LYS TYR ASP GLU TYR GLY ARG TYR SEQRES 42 A 698 ILE ASN LEU THR GLU ASN TRP MET ASN PHE VAL GLN PHE SEQRES 43 A 698 ASP HIS PHE VAL TYR LYS LEU LYS SER GLY GLU ASN VAL SEQRES 44 A 698 ILE SER ARG ASN SER HIS GLU ILE TYR ASN TYR ILE HIS SEQRES 45 A 698 ASP ARG THR SER TYR TYR GLU LEU TYR GLN LYS ALA PHE SEQRES 46 A 698 GLY VAL TYR ASN LYS ASP GLN HIS PHE GLN PHE HIS ASP SEQRES 47 A 698 ASN GLN PHE PHE PHE GLY PHE PRO GLN ARG TYR MET LEU SEQRES 48 A 698 PRO ARG GLY SER PRO GLU GLY MET THR TYR GLN PHE TYR SEQRES 49 A 698 VAL PHE VAL THR LYS TYR HIS PRO TYR LYS ALA HIS ALA SEQRES 50 A 698 SER VAL PRO MET VAL GLY SER GLY MET HIS TYR VAL ASP SEQRES 51 A 698 ALA TYR PRO MET GLY TYR PRO PHE ASP ARG PRO VAL TYR SEQRES 52 A 698 TYR GLU GLU LEU PHE TYR ALA LEU PRO ASN SER TYR PHE SEQRES 53 A 698 GLN ASP VAL ARG ILE TYR TYR GLN GLY HIS ASN TYR GLU SEQRES 54 A 698 HIS HIS ALA ASN HIS LEU ILE GLU MET HELIX 1 AA1 ASN A 25 LEU A 36 1 12 HELIX 2 AA2 TYR A 46 TYR A 56 1 11 HELIX 3 AA3 TYR A 57 ALA A 62 1 6 HELIX 4 AA4 LYS A 67 TYR A 80 1 14 HELIX 5 AA5 HIS A 94 TYR A 110 1 17 HELIX 6 AA6 ASP A 113 VAL A 128 1 16 HELIX 7 AA7 ASN A 129 ARG A 144 1 16 HELIX 8 AA8 PRO A 154 TYR A 159 1 6 HELIX 9 AA9 PRO A 160 PHE A 163 5 4 HELIX 10 AB1 ASN A 165 TYR A 179 1 15 HELIX 11 AB2 TYR A 196 TYR A 200 5 5 HELIX 12 AB3 TYR A 204 ALA A 208 5 5 HELIX 13 AB4 LEU A 209 GLU A 214 1 6 HELIX 14 AB5 ASP A 215 TYR A 229 1 15 HELIX 15 AB6 SER A 234 ASN A 239 1 6 HELIX 16 AB7 LEU A 240 ASN A 244 5 5 HELIX 17 AB8 ARG A 245 HIS A 267 1 23 HELIX 18 AB9 TYR A 307 ASN A 312 1 6 HELIX 19 AC1 ASN A 320 ALA A 323 5 4 HELIX 20 AC2 HIS A 324 GLY A 343 1 20 HELIX 21 AC3 GLU A 359 GLY A 370 1 12 HELIX 22 AC4 TYR A 376 GLY A 381 1 6 HELIX 23 AC5 ALA A 382 TYR A 393 1 12 HELIX 24 AC6 SER A 406 HIS A 410 5 5 HELIX 25 AC7 THR A 413 ARG A 416 5 4 HELIX 26 AC8 ASP A 417 TYR A 439 1 23 HELIX 27 AC9 ASP A 443 ALA A 448 1 6 HELIX 28 AD1 SER A 474 VAL A 477 5 4 HELIX 29 AD2 THR A 480 ASP A 487 1 8 HELIX 30 AD3 ASN A 535 PHE A 543 5 9 HELIX 31 AD4 HIS A 565 ILE A 567 5 3 HELIX 32 AD5 PRO A 606 MET A 610 5 5 HELIX 33 AD6 GLY A 655 ASP A 659 5 5 HELIX 34 AD7 TYR A 664 LEU A 671 1 8 SHEET 1 AA1 7 ARG A 190 TYR A 193 0 SHEET 2 AA1 7 VAL A 491 HIS A 500 1 O HIS A 492 N ILE A 192 SHEET 3 AA1 7 LEU A 462 ASP A 472 -1 N TYR A 465 O ASN A 499 SHEET 4 AA1 7 SER A 674 GLN A 684 1 O TYR A 682 N LEU A 462 SHEET 5 AA1 7 MET A 619 LYS A 629 -1 N PHE A 623 O GLN A 677 SHEET 6 AA1 7 GLU A 516 PRO A 525 -1 N VAL A 518 O THR A 628 SHEET 7 AA1 7 VAL A 544 LYS A 552 -1 O VAL A 544 N LEU A 523 SHEET 1 AA2 2 TYR A 344 HIS A 346 0 SHEET 2 AA2 2 LYS A 352 ASP A 354 -1 O VAL A 353 N VAL A 345 SHEET 1 AA3 3 VAL A 454 GLU A 458 0 SHEET 2 AA3 3 THR A 504 SER A 511 -1 O LYS A 506 N GLU A 458 SHEET 3 AA3 3 GLY A 556 ASN A 563 -1 O ASN A 558 N ILE A 509 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000