HEADER TRANSCRIPTION 31-MAR-22 7ZEV TITLE FREE FORM OF EXTENDED CYP33-RRM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE E,CYCLOPHILIN E,CYCLOPHILIN-33,ROTAMASE E; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIE, CYP33; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS RRM, RNA BINDING PROTEIN-STRUCTURAL PROTEIN COMPLEX, HISTONE 3, KEYWDS 2 H3K4ME3, EPIGENETIC, MLL1 TRANSCRIPTION REGULATION, INFANT LEUKEMIA, KEYWDS 3 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BLATTER,F.ALLAIN,C.MEYLAN REVDAT 3 19-JUN-24 7ZEV 1 REMARK REVDAT 2 03-MAY-23 7ZEV 1 TITLE JRNL REVDAT 1 13-APR-22 7ZEV 0 JRNL AUTH M.BLATTER,C.MEYLAN,A.CLERY,R.GIAMBRUNO,Y.NIKOLAEV, JRNL AUTH 2 M.HEIDECKER,J.A.SOLANKI,M.O.DIAZ,D.GABELLINI,F.H.ALLAIN JRNL TITL RNA BINDING INDUCES AN ALLOSTERIC SWITCH IN CYP33 TO REPRESS JRNL TITL 2 MLL1-MEDIATED TRANSCRIPTION. JRNL REF SCI ADV V. 9 F5330 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37075125 JRNL DOI 10.1126/SCIADV.ADF5330 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 10 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292113913. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.15 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 80 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PEPTIDYL REMARK 210 -PROLYL CIS-TRANS ISOMERASE E, REMARK 210 40 MM SODIUM CHLORIDE, 40 MM REMARK 210 SODIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] PEPTIDYL-PROLYL CIS-TRANS REMARK 210 ISOMERASE E, 40 MM SODIUM REMARK 210 CHLORIDE, 40 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.96, SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 43 -8.56 -159.05 REMARK 500 1 GLU A 69 15.52 58.06 REMARK 500 1 PHE A 73 19.37 58.19 REMARK 500 1 ARG A 86 17.37 57.36 REMARK 500 1 SER A 91 -0.37 -153.29 REMARK 500 1 SER A 92 28.21 -146.04 REMARK 500 1 PRO A 94 176.87 -59.06 REMARK 500 1 SER A 97 40.71 -71.65 REMARK 500 1 LYS A 108 144.22 64.10 REMARK 500 1 GLU A 112 12.50 -155.43 REMARK 500 2 TYR A 41 -25.65 61.85 REMARK 500 2 THR A 43 -0.48 -151.79 REMARK 500 2 GLU A 69 11.28 58.92 REMARK 500 2 PHE A 73 16.27 56.90 REMARK 500 2 MET A 85 -72.55 59.19 REMARK 500 2 SER A 91 17.64 -152.09 REMARK 500 2 TRP A 96 34.18 -78.87 REMARK 500 2 THR A 109 136.98 63.95 REMARK 500 3 THR A 43 -2.65 -153.78 REMARK 500 3 ARG A 47 31.31 -85.36 REMARK 500 3 GLU A 69 13.37 57.19 REMARK 500 3 SER A 70 -165.91 -79.83 REMARK 500 3 PHE A 73 14.03 57.39 REMARK 500 3 SER A 97 48.15 -71.97 REMARK 500 4 THR A 43 -4.98 -152.47 REMARK 500 4 GLU A 69 12.19 58.56 REMARK 500 4 SER A 70 -169.09 -79.94 REMARK 500 4 PHE A 73 14.31 57.02 REMARK 500 4 PRO A 94 176.60 -54.91 REMARK 500 4 SER A 97 45.94 -71.23 REMARK 500 4 ASP A 98 -77.42 -46.89 REMARK 500 5 TYR A 41 -11.35 55.40 REMARK 500 5 THR A 43 -0.12 -146.51 REMARK 500 5 GLU A 69 14.37 57.68 REMARK 500 5 SER A 70 -165.28 -79.86 REMARK 500 5 PHE A 73 13.26 57.47 REMARK 500 5 ARG A 86 24.54 46.88 REMARK 500 5 SER A 91 -42.43 -157.57 REMARK 500 5 PRO A 94 -177.90 -58.85 REMARK 500 5 SER A 97 44.27 -72.00 REMARK 500 5 LYS A 108 147.74 -175.78 REMARK 500 6 TYR A 41 14.33 57.99 REMARK 500 6 THR A 43 -2.15 -152.02 REMARK 500 6 GLU A 69 14.56 57.64 REMARK 500 6 PHE A 73 18.99 56.44 REMARK 500 6 PRO A 84 82.74 -59.35 REMARK 500 6 MET A 85 -126.33 52.46 REMARK 500 6 PRO A 94 179.21 -59.81 REMARK 500 6 SER A 97 46.20 -72.76 REMARK 500 6 THR A 109 149.22 62.70 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34724 RELATED DB: BMRB REMARK 900 RNA BINDING INDUCES AN ALLOSTERIC SWITCH IN CYP33 TO REPRESS MLL1 REMARK 900 MEDIATED TRANSCRIPTION REGULATION REMARK 900 RELATED ID: 7ZEW RELATED DB: PDB REMARK 900 CYP33RRM_AAUAAA REMARK 900 RELATED ID: 34725 RELATED DB: BMRB REMARK 900 CYP33RRM_AAUAAA REMARK 900 RELATED ID: 7ZEX RELATED DB: PDB REMARK 900 CYP33RRM90_UAAUGUCG REMARK 900 RELATED ID: 34726 RELATED DB: BMRB REMARK 900 CYP33RRM90_UAAUGUCG REMARK 900 RELATED ID: 7ZEY RELATED DB: PDB REMARK 900 CYP33_MLL REMARK 900 RELATED ID: 34727 RELATED DB: BMRB REMARK 900 CYP33_MLL REMARK 900 RELATED ID: 7ZEZ RELATED DB: PDB REMARK 900 TERNARY_COMPLEX REMARK 900 RELATED ID: 34728 RELATED DB: BMRB REMARK 900 TERNARY_COMPLEX DBREF 7ZEV A 1 114 UNP Q9UNP9 PPIE_HUMAN 1 114 SEQADV 7ZEV ALA A -3 UNP Q9UNP9 EXPRESSION TAG SEQADV 7ZEV GLY A -2 UNP Q9UNP9 EXPRESSION TAG SEQADV 7ZEV HIS A -1 UNP Q9UNP9 EXPRESSION TAG SEQRES 1 A 117 ALA GLY HIS MET ALA THR THR LYS ARG VAL LEU TYR VAL SEQRES 2 A 117 GLY GLY LEU ALA GLU GLU VAL ASP ASP LYS VAL LEU HIS SEQRES 3 A 117 ALA ALA PHE ILE PRO PHE GLY ASP ILE THR ASP ILE GLN SEQRES 4 A 117 ILE PRO LEU ASP TYR GLU THR GLU LYS HIS ARG GLY PHE SEQRES 5 A 117 ALA PHE VAL GLU PHE GLU LEU ALA GLU ASP ALA ALA ALA SEQRES 6 A 117 ALA ILE ASP ASN MET ASN GLU SER GLU LEU PHE GLY ARG SEQRES 7 A 117 THR ILE ARG VAL ASN LEU ALA LYS PRO MET ARG ILE LYS SEQRES 8 A 117 GLU GLY SER SER ARG PRO VAL TRP SER ASP ASP ASP TRP SEQRES 9 A 117 LEU LYS LYS PHE SER GLY LYS THR LEU GLU GLU ASN LYS HELIX 1 AA1 ASP A 18 ILE A 27 1 10 HELIX 2 AA2 PRO A 28 GLY A 30 5 3 HELIX 3 AA3 LEU A 56 ASN A 68 1 13 HELIX 4 AA4 SER A 97 LYS A 108 1 12 SHEET 1 AA1 4 ILE A 32 GLN A 36 0 SHEET 2 AA1 4 PHE A 49 PHE A 54 -1 O GLU A 53 N THR A 33 SHEET 3 AA1 4 VAL A 7 GLY A 11 -1 N VAL A 10 O ALA A 50 SHEET 4 AA1 4 ARG A 78 ASN A 80 -1 O ASN A 80 N TYR A 9 SHEET 1 AA2 2 GLU A 71 LEU A 72 0 SHEET 2 AA2 2 ARG A 75 THR A 76 -1 O ARG A 75 N LEU A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1