HEADER HYDROLASE 05-APR-22 7ZH3 TITLE USP1 BOUND TO UBIQUITIN CONJUGATED TO FANCD2 (FOCUSED REFINEMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-60S RIBOSOMAL PROTEIN L40; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: CEP52,UBIQUITIN A-52 RESIDUE RIBOSOMAL PROTEIN FUSION COMPND 5 PRODUCT 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: DEUBIQUITINATING ENZYME 1,HUBP,UBIQUITIN THIOESTERASE 1, COMPND 11 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 1; COMPND 12 EC: 3.4.19.12; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBA52, UBCEP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: USP1; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: SF21 KEYWDS DEUBIQUITINASE, COMPLEX, ENZYME-SUBSTRATE, HYDROLASE EXPDTA ELECTRON MICROSCOPY AUTHOR M.L.RENNIE,H.WALDEN REVDAT 1 12-OCT-22 7ZH3 0 JRNL AUTH M.L.RENNIE,C.ARKINSON,V.K.CHAUGULE,H.WALDEN JRNL TITL CRYO-EM REVEALS A MECHANISM OF USP1 INHIBITION THROUGH A JRNL TITL 2 CRYPTIC BINDING SITE. JRNL REF SCI ADV V. 8 Q6353 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 36170365 JRNL DOI 10.1126/SCIADV.ABQ6353 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7AY1 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 81.500 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 583484 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7ZH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122195. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : USP1(C90S) BOUND TO UBIQUITIN REMARK 245 CONJUGATED TO FANCD2; UBIQUITIN- REMARK 245 60S RIBOSOMAL PROTEIN L40; REMARK 245 UBIQUITIN CARBOXYL-TERMINAL REMARK 245 HYDROLASE 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOTTED FOR 3.0 SECS BEFORE REMARK 245 PLUNGING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 GLY D 3 REMARK 465 VAL D 4 REMARK 465 ILE D 5 REMARK 465 PRO D 6 REMARK 465 SER D 7 REMARK 465 GLU D 8 REMARK 465 SER D 9 REMARK 465 ASN D 10 REMARK 465 GLY D 11 REMARK 465 LEU D 12 REMARK 465 SER D 13 REMARK 465 ARG D 14 REMARK 465 GLY D 15 REMARK 465 SER D 16 REMARK 465 PRO D 17 REMARK 465 SER D 18 REMARK 465 LYS D 19 REMARK 465 LYS D 20 REMARK 465 ASN D 21 REMARK 465 ARG D 22 REMARK 465 LEU D 23 REMARK 465 SER D 24 REMARK 465 LEU D 25 REMARK 465 LYS D 26 REMARK 465 PHE D 27 REMARK 465 PHE D 28 REMARK 465 GLN D 29 REMARK 465 LYS D 30 REMARK 465 LYS D 31 REMARK 465 GLU D 32 REMARK 465 THR D 33 REMARK 465 LYS D 34 REMARK 465 ARG D 35 REMARK 465 ALA D 36 REMARK 465 LEU D 37 REMARK 465 ASP D 38 REMARK 465 PHE D 39 REMARK 465 THR D 40 REMARK 465 ASP D 41 REMARK 465 SER D 42 REMARK 465 GLN D 43 REMARK 465 GLU D 44 REMARK 465 ASN D 45 REMARK 465 GLU D 46 REMARK 465 GLU D 47 REMARK 465 LYS D 48 REMARK 465 ALA D 49 REMARK 465 SER D 50 REMARK 465 GLU D 51 REMARK 465 TYR D 52 REMARK 465 ARG D 53 REMARK 465 ALA D 54 REMARK 465 SER D 55 REMARK 465 GLU D 56 REMARK 465 ILE D 57 REMARK 465 ASP D 58 REMARK 465 GLN D 59 REMARK 465 VAL D 60 REMARK 465 VAL D 61 REMARK 465 PRO D 62 REMARK 465 ALA D 63 REMARK 465 ALA D 64 REMARK 465 GLN D 65 REMARK 465 SER D 66 REMARK 465 SER D 67 REMARK 465 PRO D 68 REMARK 465 ILE D 69 REMARK 465 ASN D 70 REMARK 465 CYS D 71 REMARK 465 GLU D 72 REMARK 465 LYS D 73 REMARK 465 ARG D 74 REMARK 465 GLU D 75 REMARK 465 LEU D 123 REMARK 465 LYS D 124 REMARK 465 ASP D 125 REMARK 465 GLU D 126 REMARK 465 ALA D 127 REMARK 465 ASN D 128 REMARK 465 GLN D 129 REMARK 465 LYS D 130 REMARK 465 ASP D 131 REMARK 465 LYS D 132 REMARK 465 GLY D 133 REMARK 465 ASN D 134 REMARK 465 CYS D 135 REMARK 465 LYS D 136 REMARK 465 GLU D 137 REMARK 465 ASP D 138 REMARK 465 SER D 139 REMARK 465 LEU D 140 REMARK 465 ALA D 141 REMARK 465 VAL D 223 REMARK 465 LYS D 224 REMARK 465 ASN D 225 REMARK 465 VAL D 226 REMARK 465 ALA D 227 REMARK 465 GLU D 228 REMARK 465 LEU D 229 REMARK 465 PRO D 230 REMARK 465 THR D 231 REMARK 465 LYS D 232 REMARK 465 VAL D 233 REMARK 465 GLU D 234 REMARK 465 GLU D 235 REMARK 465 ILE D 236 REMARK 465 PRO D 237 REMARK 465 HIS D 238 REMARK 465 PRO D 239 REMARK 465 LYS D 240 REMARK 465 GLU D 241 REMARK 465 GLU D 242 REMARK 465 MET D 243 REMARK 465 ASN D 244 REMARK 465 GLY D 245 REMARK 465 ILE D 246 REMARK 465 ASN D 247 REMARK 465 SER D 248 REMARK 465 ILE D 249 REMARK 465 GLU D 250 REMARK 465 MET D 251 REMARK 465 ASP D 252 REMARK 465 SER D 253 REMARK 465 MET D 254 REMARK 465 ARG D 255 REMARK 465 HIS D 256 REMARK 465 SER D 257 REMARK 465 GLU D 258 REMARK 465 ASP D 259 REMARK 465 PHE D 260 REMARK 465 LYS D 261 REMARK 465 GLU D 262 REMARK 465 LYS D 263 REMARK 465 LEU D 264 REMARK 465 PRO D 265 REMARK 465 LYS D 266 REMARK 465 GLY D 267 REMARK 465 ASN D 268 REMARK 465 GLY D 269 REMARK 465 LYS D 270 REMARK 465 ARG D 271 REMARK 465 LYS D 272 REMARK 465 SER D 273 REMARK 465 ASP D 274 REMARK 465 THR D 275 REMARK 465 GLU D 276 REMARK 465 PHE D 277 REMARK 465 GLY D 278 REMARK 465 ASN D 279 REMARK 465 MET D 280 REMARK 465 LYS D 281 REMARK 465 LYS D 282 REMARK 465 LYS D 283 REMARK 465 VAL D 284 REMARK 465 LYS D 285 REMARK 465 LEU D 286 REMARK 465 SER D 287 REMARK 465 LYS D 288 REMARK 465 GLU D 289 REMARK 465 HIS D 290 REMARK 465 GLN D 291 REMARK 465 SER D 292 REMARK 465 LEU D 293 REMARK 465 GLU D 294 REMARK 465 GLU D 295 REMARK 465 ASN D 296 REMARK 465 GLN D 297 REMARK 465 ARG D 298 REMARK 465 GLN D 299 REMARK 465 THR D 300 REMARK 465 ARG D 301 REMARK 465 SER D 302 REMARK 465 LYS D 303 REMARK 465 ARG D 304 REMARK 465 LYS D 305 REMARK 465 ALA D 306 REMARK 465 THR D 307 REMARK 465 SER D 308 REMARK 465 ASP D 309 REMARK 465 THR D 310 REMARK 465 LEU D 311 REMARK 465 GLU D 312 REMARK 465 SER D 313 REMARK 465 PRO D 314 REMARK 465 PRO D 315 REMARK 465 LYS D 316 REMARK 465 ILE D 317 REMARK 465 ILE D 318 REMARK 465 PRO D 319 REMARK 465 LYS D 320 REMARK 465 TYR D 321 REMARK 465 ILE D 322 REMARK 465 SER D 323 REMARK 465 GLU D 324 REMARK 465 ASN D 325 REMARK 465 GLU D 326 REMARK 465 SER D 327 REMARK 465 PRO D 328 REMARK 465 ARG D 329 REMARK 465 PRO D 330 REMARK 465 SER D 331 REMARK 465 GLN D 332 REMARK 465 LYS D 333 REMARK 465 LYS D 334 REMARK 465 SER D 335 REMARK 465 ARG D 336 REMARK 465 VAL D 337 REMARK 465 LYS D 338 REMARK 465 ILE D 339 REMARK 465 ASN D 340 REMARK 465 TRP D 341 REMARK 465 LEU D 342 REMARK 465 LYS D 343 REMARK 465 SER D 344 REMARK 465 ALA D 345 REMARK 465 THR D 346 REMARK 465 LYS D 347 REMARK 465 GLN D 348 REMARK 465 PRO D 349 REMARK 465 SER D 350 REMARK 465 ILE D 351 REMARK 465 LEU D 352 REMARK 465 SER D 353 REMARK 465 LYS D 354 REMARK 465 PHE D 355 REMARK 465 CYS D 356 REMARK 465 SER D 357 REMARK 465 LEU D 358 REMARK 465 GLY D 359 REMARK 465 LYS D 360 REMARK 465 ILE D 361 REMARK 465 THR D 362 REMARK 465 THR D 363 REMARK 465 ASN D 364 REMARK 465 GLN D 365 REMARK 465 GLY D 366 REMARK 465 VAL D 367 REMARK 465 LYS D 368 REMARK 465 GLY D 369 REMARK 465 GLN D 370 REMARK 465 SER D 371 REMARK 465 LYS D 372 REMARK 465 GLU D 373 REMARK 465 ASN D 374 REMARK 465 GLU D 375 REMARK 465 CYS D 376 REMARK 465 ASP D 377 REMARK 465 PRO D 378 REMARK 465 GLU D 379 REMARK 465 GLU D 380 REMARK 465 ASP D 381 REMARK 465 LEU D 382 REMARK 465 GLY D 383 REMARK 465 LYS D 384 REMARK 465 CYS D 385 REMARK 465 GLU D 386 REMARK 465 SER D 387 REMARK 465 ASP D 388 REMARK 465 ASN D 389 REMARK 465 THR D 390 REMARK 465 THR D 391 REMARK 465 ASN D 392 REMARK 465 GLY D 393 REMARK 465 CYS D 394 REMARK 465 GLY D 395 REMARK 465 LEU D 396 REMARK 465 GLU D 397 REMARK 465 SER D 398 REMARK 465 PRO D 399 REMARK 465 GLY D 400 REMARK 465 ASN D 401 REMARK 465 THR D 402 REMARK 465 VAL D 403 REMARK 465 THR D 404 REMARK 465 PRO D 405 REMARK 465 VAL D 406 REMARK 465 ASN D 407 REMARK 465 VAL D 408 REMARK 465 ASN D 409 REMARK 465 GLU D 410 REMARK 465 VAL D 411 REMARK 465 LYS D 412 REMARK 465 PRO D 413 REMARK 465 ILE D 414 REMARK 465 ASN D 415 REMARK 465 LYS D 416 REMARK 465 GLY D 417 REMARK 465 GLU D 418 REMARK 465 GLU D 419 REMARK 465 GLN D 420 REMARK 465 ILE D 421 REMARK 465 GLU D 464 REMARK 465 LEU D 465 REMARK 465 SER D 466 REMARK 465 LYS D 467 REMARK 465 VAL D 468 REMARK 465 GLU D 469 REMARK 465 GLU D 470 REMARK 465 SER D 471 REMARK 465 SER D 472 REMARK 465 GLU D 473 REMARK 465 ILE D 474 REMARK 465 SER D 475 REMARK 465 PRO D 476 REMARK 465 GLU D 477 REMARK 465 PRO D 478 REMARK 465 LYS D 479 REMARK 465 THR D 480 REMARK 465 GLU D 481 REMARK 465 GLY D 539 REMARK 465 LEU D 540 REMARK 465 GLU D 541 REMARK 465 PHE D 542 REMARK 465 ASP D 543 REMARK 465 CYS D 544 REMARK 465 TYR D 545 REMARK 465 GLY D 546 REMARK 465 GLY D 547 REMARK 465 ASP D 602 REMARK 465 LEU D 603 REMARK 465 ASN D 604 REMARK 465 SER D 605 REMARK 465 LEU D 606 REMARK 465 GLU D 607 REMARK 465 LEU D 608 REMARK 465 ASP D 609 REMARK 465 LYS D 610 REMARK 465 GLY D 611 REMARK 465 ASN D 612 REMARK 465 PHE D 613 REMARK 465 VAL D 614 REMARK 465 VAL D 615 REMARK 465 ASP D 616 REMARK 465 GLN D 617 REMARK 465 MET D 618 REMARK 465 CYS D 619 REMARK 465 GLU D 620 REMARK 465 ILE D 621 REMARK 465 GLY D 622 REMARK 465 LYS D 623 REMARK 465 PRO D 624 REMARK 465 GLU D 625 REMARK 465 PRO D 626 REMARK 465 LEU D 627 REMARK 465 ASN D 628 REMARK 465 GLU D 629 REMARK 465 GLU D 630 REMARK 465 GLU D 631 REMARK 465 ALA D 632 REMARK 465 ARG D 633 REMARK 465 GLY D 634 REMARK 465 VAL D 635 REMARK 465 VAL D 636 REMARK 465 GLU D 637 REMARK 465 ASN D 638 REMARK 465 TYR D 639 REMARK 465 ASN D 640 REMARK 465 ASP D 641 REMARK 465 GLU D 642 REMARK 465 GLU D 643 REMARK 465 VAL D 644 REMARK 465 SER D 645 REMARK 465 ILE D 646 REMARK 465 ARG D 647 REMARK 465 VAL D 648 REMARK 465 GLY D 649 REMARK 465 GLY D 650 REMARK 465 ASN D 651 REMARK 465 THR D 652 REMARK 465 GLN D 653 REMARK 465 PRO D 654 REMARK 465 SER D 655 REMARK 465 LYS D 656 REMARK 465 VAL D 657 REMARK 465 LEU D 658 REMARK 465 ASN D 659 REMARK 465 LYS D 660 REMARK 465 LYS D 661 REMARK 465 ASN D 662 REMARK 465 VAL D 663 REMARK 465 GLU D 664 REMARK 465 ALA D 665 REMARK 465 ILE D 666 REMARK 465 GLY D 667 REMARK 465 LEU D 668 REMARK 465 LEU D 669 REMARK 465 ALA D 670 REMARK 465 ALA D 671 REMARK 465 GLN D 672 REMARK 465 LYS D 673 REMARK 465 SER D 674 REMARK 465 LYS D 675 REMARK 465 ALA D 676 REMARK 465 ASP D 677 REMARK 465 TYR D 678 REMARK 465 GLU D 679 REMARK 465 LEU D 680 REMARK 465 TYR D 681 REMARK 465 ASN D 682 REMARK 465 LYS D 683 REMARK 465 ALA D 684 REMARK 465 SER D 685 REMARK 465 ASN D 686 REMARK 465 PRO D 687 REMARK 465 ASP D 688 REMARK 465 LYS D 689 REMARK 465 VAL D 690 REMARK 465 ALA D 691 REMARK 465 SER D 692 REMARK 465 THR D 693 REMARK 465 ALA D 694 REMARK 465 PHE D 695 REMARK 465 ALA D 696 REMARK 465 GLU D 697 REMARK 465 ASN D 698 REMARK 465 ARG D 699 REMARK 465 ASN D 700 REMARK 465 SER D 701 REMARK 465 GLU D 702 REMARK 465 THR D 703 REMARK 465 SER D 704 REMARK 465 ASP D 705 REMARK 465 THR D 706 REMARK 465 THR D 707 REMARK 465 GLY D 708 REMARK 465 THR D 709 REMARK 465 HIS D 710 REMARK 465 GLU D 711 REMARK 465 SER D 712 REMARK 465 ASP D 713 REMARK 465 ARG D 714 REMARK 465 ASN D 715 REMARK 465 LYS D 716 REMARK 465 GLU D 717 REMARK 465 SER D 718 REMARK 465 SER D 719 REMARK 465 ASP D 720 REMARK 465 GLN D 721 REMARK 465 THR D 722 REMARK 465 GLY D 723 REMARK 465 ILE D 724 REMARK 465 ASN D 725 REMARK 465 ILE D 726 REMARK 465 SER D 727 REMARK 465 GLY D 728 REMARK 465 PHE D 729 REMARK 465 GLU D 730 REMARK 465 ASN D 731 REMARK 465 LYS D 732 REMARK 465 ILE D 733 REMARK 465 SER D 734 REMARK 465 TYR D 735 REMARK 465 VAL D 736 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO D 79 46.74 -82.67 REMARK 500 LYS D 169 2.01 -68.99 REMARK 500 PRO D 178 51.38 -90.90 REMARK 500 TYR D 195 55.44 -143.87 REMARK 500 GLU D 442 -74.17 -78.37 REMARK 500 ASP D 522 -77.04 -98.05 REMARK 500 CYS D 534 50.54 -90.83 REMARK 500 ASP D 752 -117.82 49.02 REMARK 500 SER D 772 101.98 -51.36 REMARK 500 TYR D 778 -42.16 -130.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 440 SG REMARK 620 2 CYS D 443 SG 107.0 REMARK 620 3 CYS D 506 SG 107.0 109.0 REMARK 620 4 CYS D 509 SG 110.8 108.9 113.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-14721 RELATED DB: EMDB REMARK 900 OTHER CLASS REMARK 900 RELATED ID: EMD-14722 RELATED DB: EMDB REMARK 900 CONSENSUS RECONSTRUCTION REMARK 900 RELATED ID: EMD-14719 RELATED DB: EMDB REMARK 900 OTHER FOCUSED REFINEMENT REMARK 900 RELATED ID: EMD-14720 RELATED DB: EMDB REMARK 900 USP1 BOUND TO UBIQUITIN CONJUGATED TO FANCD2 (FOCUSED REFINEMENT) DBREF 7ZH3 C 1 76 UNP P62987 RL40_HUMAN 1 76 DBREF 7ZH3 D 1 785 UNP O94782 UBP1_HUMAN 1 785 SEQADV 7ZH3 GLY C -3 UNP P62987 EXPRESSION TAG SEQADV 7ZH3 PRO C -2 UNP P62987 EXPRESSION TAG SEQADV 7ZH3 GLY C -1 UNP P62987 EXPRESSION TAG SEQADV 7ZH3 SER C 0 UNP P62987 EXPRESSION TAG SEQADV 7ZH3 GLY D 0 UNP O94782 EXPRESSION TAG SEQADV 7ZH3 SER D 90 UNP O94782 CYS 90 ENGINEERED MUTATION SEQADV 7ZH3 ALA D 670 UNP O94782 GLY 670 ENGINEERED MUTATION SEQADV 7ZH3 ALA D 671 UNP O94782 GLY 671 ENGINEERED MUTATION SEQRES 1 C 80 GLY PRO GLY SER MET GLN ILE PHE VAL LYS THR LEU THR SEQRES 2 C 80 GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR SEQRES 3 C 80 ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY SEQRES 4 C 80 ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS SEQRES 5 C 80 GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE SEQRES 6 C 80 GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG SEQRES 7 C 80 GLY GLY SEQRES 1 D 786 GLY MET PRO GLY VAL ILE PRO SER GLU SER ASN GLY LEU SEQRES 2 D 786 SER ARG GLY SER PRO SER LYS LYS ASN ARG LEU SER LEU SEQRES 3 D 786 LYS PHE PHE GLN LYS LYS GLU THR LYS ARG ALA LEU ASP SEQRES 4 D 786 PHE THR ASP SER GLN GLU ASN GLU GLU LYS ALA SER GLU SEQRES 5 D 786 TYR ARG ALA SER GLU ILE ASP GLN VAL VAL PRO ALA ALA SEQRES 6 D 786 GLN SER SER PRO ILE ASN CYS GLU LYS ARG GLU ASN LEU SEQRES 7 D 786 LEU PRO PHE VAL GLY LEU ASN ASN LEU GLY ASN THR SER SEQRES 8 D 786 TYR LEU ASN SER ILE LEU GLN VAL LEU TYR PHE CYS PRO SEQRES 9 D 786 GLY PHE LYS SER GLY VAL LYS HIS LEU PHE ASN ILE ILE SEQRES 10 D 786 SER ARG LYS LYS GLU ALA LEU LYS ASP GLU ALA ASN GLN SEQRES 11 D 786 LYS ASP LYS GLY ASN CYS LYS GLU ASP SER LEU ALA SER SEQRES 12 D 786 TYR GLU LEU ILE CYS SER LEU GLN SER LEU ILE ILE SER SEQRES 13 D 786 VAL GLU GLN LEU GLN ALA SER PHE LEU LEU ASN PRO GLU SEQRES 14 D 786 LYS TYR THR ASP GLU LEU ALA THR GLN PRO ARG ARG LEU SEQRES 15 D 786 LEU ASN THR LEU ARG GLU LEU ASN PRO MET TYR GLU GLY SEQRES 16 D 786 TYR LEU GLN HIS ASP ALA GLN GLU VAL LEU GLN CYS ILE SEQRES 17 D 786 LEU GLY ASN ILE GLN GLU THR CYS GLN LEU LEU LYS LYS SEQRES 18 D 786 GLU GLU VAL LYS ASN VAL ALA GLU LEU PRO THR LYS VAL SEQRES 19 D 786 GLU GLU ILE PRO HIS PRO LYS GLU GLU MET ASN GLY ILE SEQRES 20 D 786 ASN SER ILE GLU MET ASP SER MET ARG HIS SER GLU ASP SEQRES 21 D 786 PHE LYS GLU LYS LEU PRO LYS GLY ASN GLY LYS ARG LYS SEQRES 22 D 786 SER ASP THR GLU PHE GLY ASN MET LYS LYS LYS VAL LYS SEQRES 23 D 786 LEU SER LYS GLU HIS GLN SER LEU GLU GLU ASN GLN ARG SEQRES 24 D 786 GLN THR ARG SER LYS ARG LYS ALA THR SER ASP THR LEU SEQRES 25 D 786 GLU SER PRO PRO LYS ILE ILE PRO LYS TYR ILE SER GLU SEQRES 26 D 786 ASN GLU SER PRO ARG PRO SER GLN LYS LYS SER ARG VAL SEQRES 27 D 786 LYS ILE ASN TRP LEU LYS SER ALA THR LYS GLN PRO SER SEQRES 28 D 786 ILE LEU SER LYS PHE CYS SER LEU GLY LYS ILE THR THR SEQRES 29 D 786 ASN GLN GLY VAL LYS GLY GLN SER LYS GLU ASN GLU CYS SEQRES 30 D 786 ASP PRO GLU GLU ASP LEU GLY LYS CYS GLU SER ASP ASN SEQRES 31 D 786 THR THR ASN GLY CYS GLY LEU GLU SER PRO GLY ASN THR SEQRES 32 D 786 VAL THR PRO VAL ASN VAL ASN GLU VAL LYS PRO ILE ASN SEQRES 33 D 786 LYS GLY GLU GLU GLN ILE GLY PHE GLU LEU VAL GLU LYS SEQRES 34 D 786 LEU PHE GLN GLY GLN LEU VAL LEU ARG THR ARG CYS LEU SEQRES 35 D 786 GLU CYS GLU SER LEU THR GLU ARG ARG GLU ASP PHE GLN SEQRES 36 D 786 ASP ILE SER VAL PRO VAL GLN GLU ASP GLU LEU SER LYS SEQRES 37 D 786 VAL GLU GLU SER SER GLU ILE SER PRO GLU PRO LYS THR SEQRES 38 D 786 GLU MET LYS THR LEU ARG TRP ALA ILE SER GLN PHE ALA SEQRES 39 D 786 SER VAL GLU ARG ILE VAL GLY GLU ASP LYS TYR PHE CYS SEQRES 40 D 786 GLU ASN CYS HIS HIS TYR THR GLU ALA GLU ARG SER LEU SEQRES 41 D 786 LEU PHE ASP LYS MET PRO GLU VAL ILE THR ILE HIS LEU SEQRES 42 D 786 LYS CYS PHE ALA ALA SER GLY LEU GLU PHE ASP CYS TYR SEQRES 43 D 786 GLY GLY GLY LEU SER LYS ILE ASN THR PRO LEU LEU THR SEQRES 44 D 786 PRO LEU LYS LEU SER LEU GLU GLU TRP SER THR LYS PRO SEQRES 45 D 786 THR ASN ASP SER TYR GLY LEU PHE ALA VAL VAL MET HIS SEQRES 46 D 786 SER GLY ILE THR ILE SER SER GLY HIS TYR THR ALA SER SEQRES 47 D 786 VAL LYS VAL THR ASP LEU ASN SER LEU GLU LEU ASP LYS SEQRES 48 D 786 GLY ASN PHE VAL VAL ASP GLN MET CYS GLU ILE GLY LYS SEQRES 49 D 786 PRO GLU PRO LEU ASN GLU GLU GLU ALA ARG GLY VAL VAL SEQRES 50 D 786 GLU ASN TYR ASN ASP GLU GLU VAL SER ILE ARG VAL GLY SEQRES 51 D 786 GLY ASN THR GLN PRO SER LYS VAL LEU ASN LYS LYS ASN SEQRES 52 D 786 VAL GLU ALA ILE GLY LEU LEU ALA ALA GLN LYS SER LYS SEQRES 53 D 786 ALA ASP TYR GLU LEU TYR ASN LYS ALA SER ASN PRO ASP SEQRES 54 D 786 LYS VAL ALA SER THR ALA PHE ALA GLU ASN ARG ASN SER SEQRES 55 D 786 GLU THR SER ASP THR THR GLY THR HIS GLU SER ASP ARG SEQRES 56 D 786 ASN LYS GLU SER SER ASP GLN THR GLY ILE ASN ILE SER SEQRES 57 D 786 GLY PHE GLU ASN LYS ILE SER TYR VAL VAL GLN SER LEU SEQRES 58 D 786 LYS GLU TYR GLU GLY LYS TRP LEU LEU PHE ASP ASP SER SEQRES 59 D 786 GLU VAL LYS VAL THR GLU GLU LYS ASP PHE LEU ASN SER SEQRES 60 D 786 LEU SER PRO SER THR SER PRO THR SER THR PRO TYR LEU SEQRES 61 D 786 LEU PHE TYR LYS LYS LEU HET ZN D1000 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *38(H2 O) HELIX 1 AA1 THR C 22 GLY C 35 1 14 HELIX 2 AA2 PRO C 37 GLN C 41 5 5 HELIX 3 AA3 THR D 89 PHE D 101 1 13 HELIX 4 AA4 GLY D 104 ALA D 122 1 19 HELIX 5 AA5 TYR D 143 ASN D 166 1 24 HELIX 6 AA6 PRO D 178 ASN D 189 1 12 HELIX 7 AA7 PRO D 190 GLU D 193 5 4 HELIX 8 AA8 ALA D 200 GLU D 222 1 23 HELIX 9 AA9 GLU D 424 GLN D 431 1 8 HELIX 10 AB1 THR D 484 SER D 494 1 11 HELIX 11 AB2 VAL D 499 LYS D 503 5 5 HELIX 12 AB3 LEU D 564 SER D 568 5 5 HELIX 13 AB4 VAL D 737 GLU D 742 5 6 HELIX 14 AB5 GLU D 759 SER D 768 1 10 SHEET 1 AA1 5 THR C 12 VAL C 17 0 SHEET 2 AA1 5 MET C 1 LYS C 6 -1 N MET C 1 O VAL C 17 SHEET 3 AA1 5 THR C 66 VAL C 70 1 O LEU C 67 N LYS C 6 SHEET 4 AA1 5 ARG C 42 PHE C 45 -1 N ILE C 44 O HIS C 68 SHEET 5 AA1 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA2 2 ARG C 74 GLY C 75 0 SHEET 2 AA2 2 HIS D 198 ASP D 199 -1 O HIS D 198 N GLY C 75 SHEET 1 AA3 2 GLY D 82 LEU D 83 0 SHEET 2 AA3 2 ALA D 175 THR D 176 1 O THR D 176 N GLY D 82 SHEET 1 AA4 4 LEU D 446 PHE D 453 0 SHEET 2 AA4 4 GLY D 432 CYS D 440 -1 N LEU D 434 O GLU D 451 SHEET 3 AA4 4 ALA D 515 PHE D 521 -1 O GLU D 516 N ARG D 439 SHEET 4 AA4 4 GLU D 496 ILE D 498 -1 N GLU D 496 O ARG D 517 SHEET 1 AA5 5 ILE D 456 PRO D 459 0 SHEET 2 AA5 5 VAL D 527 LYS D 533 1 O THR D 529 N ILE D 456 SHEET 3 AA5 5 SER D 775 LYS D 784 -1 O TYR D 782 N ILE D 528 SHEET 4 AA5 5 TYR D 576 SER D 585 -1 N HIS D 584 O THR D 776 SHEET 5 AA5 5 LYS D 561 LEU D 562 -1 N LEU D 562 O TYR D 576 SHEET 1 AA6 7 ILE D 456 PRO D 459 0 SHEET 2 AA6 7 VAL D 527 LYS D 533 1 O THR D 529 N ILE D 456 SHEET 3 AA6 7 SER D 775 LYS D 784 -1 O TYR D 782 N ILE D 528 SHEET 4 AA6 7 TYR D 576 SER D 585 -1 N HIS D 584 O THR D 776 SHEET 5 AA6 7 HIS D 593 LYS D 599 -1 O THR D 595 N MET D 583 SHEET 6 AA6 7 TRP D 747 ASP D 751 -1 O PHE D 750 N ALA D 596 SHEET 7 AA6 7 GLU D 754 THR D 758 -1 O GLU D 754 N ASP D 751 SHEET 1 AA7 2 TYR D 504 CYS D 506 0 SHEET 2 AA7 2 HIS D 511 THR D 513 -1 O THR D 513 N TYR D 504 SHEET 1 AA8 2 PHE D 535 ALA D 536 0 SHEET 2 AA8 2 SER D 550 LYS D 551 -1 O SER D 550 N ALA D 536 LINK SG CYS D 440 ZN ZN D1000 1555 1555 2.32 LINK SG CYS D 443 ZN ZN D1000 1555 1555 2.24 LINK SG CYS D 506 ZN ZN D1000 1555 1555 2.36 LINK SG CYS D 509 ZN ZN D1000 1555 1555 2.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000