HEADER OXIDOREDUCTASE 07-APR-22 7ZHY TITLE LEISHMANIA DONOVANI GLUCOSE 6-PHOSPHATE DEHYDROGENASE C138S MUTANT TITLE 2 COMPLEXED WITH NADP(H) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.49; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA DONOVANI; SOURCE 3 ORGANISM_TAXID: 5661; SOURCE 4 GENE: G6PDH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRYPANOSOMA, LEISHMANIA DONOVANI, GLUCOSE 6-PHOSPHATE DEHYDROGENASE, KEYWDS 2 G6P, NADP(H), PENTOSE PHOSPHATE PATHWAY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FRITZ-WOLF,I.BERNEBURG REVDAT 3 01-MAY-24 7ZHY 1 REMARK REVDAT 2 21-DEC-22 7ZHY 1 JRNL REVDAT 1 14-DEC-22 7ZHY 0 JRNL AUTH I.BERNEBURG,S.RAHLFS,K.BECKER,K.FRITZ-WOLF JRNL TITL CRYSTAL STRUCTURE OF LEISHMANIA DONOVANI GLUCOSE 6-PHOSPHATE JRNL TITL 2 DEHYDROGENASE REVEALS A UNIQUE N-TERMINAL DOMAIN. JRNL REF COMMUN BIOL V. 5 1353 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 36494598 JRNL DOI 10.1038/S42003-022-04307-7 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 102071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.1800 - 4.9100 1.00 3122 346 0.1668 0.1848 REMARK 3 2 4.9100 - 4.2900 0.99 3088 344 0.1338 0.1576 REMARK 3 3 4.2900 - 3.9000 1.00 3089 343 0.1527 0.1776 REMARK 3 4 3.9000 - 3.6200 0.99 3042 338 0.1699 0.1990 REMARK 3 5 3.6200 - 3.4000 0.99 3085 342 0.1732 0.2180 REMARK 3 6 3.4000 - 3.2300 1.00 3052 340 0.1748 0.2095 REMARK 3 7 3.2300 - 3.0900 1.00 3100 344 0.1843 0.2252 REMARK 3 8 3.0900 - 2.9700 1.00 3028 337 0.1817 0.2210 REMARK 3 9 2.9700 - 2.8700 1.00 3083 342 0.1793 0.2279 REMARK 3 10 2.8700 - 2.7800 1.00 3052 339 0.1786 0.2168 REMARK 3 11 2.7800 - 2.7000 1.00 3067 341 0.1758 0.2489 REMARK 3 12 2.7000 - 2.6300 1.00 3062 341 0.1836 0.2431 REMARK 3 13 2.6300 - 2.5700 1.00 3076 342 0.1856 0.2527 REMARK 3 14 2.5700 - 2.5100 1.00 3059 340 0.1974 0.2490 REMARK 3 15 2.5100 - 2.4600 1.00 3067 341 0.1983 0.2497 REMARK 3 16 2.4600 - 2.4100 1.00 3041 338 0.1952 0.2468 REMARK 3 17 2.4100 - 2.3600 1.00 3029 337 0.2086 0.2405 REMARK 3 18 2.3600 - 2.3200 1.00 3093 343 0.1992 0.2571 REMARK 3 19 2.3200 - 2.2800 1.00 3015 335 0.1968 0.2428 REMARK 3 20 2.2800 - 2.2400 0.99 3067 341 0.3084 0.3699 REMARK 3 21 2.2400 - 2.2100 0.99 3054 340 0.2821 0.3813 REMARK 3 22 2.2100 - 2.1800 1.00 3038 337 0.2287 0.2762 REMARK 3 23 2.1800 - 2.1400 1.00 3071 340 0.2351 0.2984 REMARK 3 24 2.1400 - 2.1200 1.00 3001 334 0.2295 0.2485 REMARK 3 25 2.1200 - 2.0900 1.00 3090 344 0.2365 0.2805 REMARK 3 26 2.0900 - 2.0600 1.00 3024 336 0.2847 0.3264 REMARK 3 27 2.0600 - 2.0400 1.00 3024 336 0.3312 0.3445 REMARK 3 28 2.0400 - 2.0100 1.00 3060 340 0.3732 0.4144 REMARK 3 29 2.0100 - 1.9900 0.98 2985 331 0.4331 0.4623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.294 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 8922 REMARK 3 ANGLE : 1.072 12031 REMARK 3 CHIRALITY : 0.059 1310 REMARK 3 PLANARITY : 0.008 1542 REMARK 3 DIHEDRAL : 13.378 1246 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102119 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 47.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: D_1292122100 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 3000 AND 100-150 MM AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 111.58500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 111.58500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 GLY A 52 REMARK 465 ALA A 53 REMARK 465 GLU A 54 REMARK 465 SER A 55 REMARK 465 CYS A 56 REMARK 465 ASP A 57 REMARK 465 ARG A 58 REMARK 465 ILE A 59 REMARK 465 ASN A 60 REMARK 465 CYS A 61 REMARK 465 LYS A 62 REMARK 465 VAL A 63 REMARK 465 LYS A 64 REMARK 465 TYR A 476 REMARK 465 ASP A 477 REMARK 465 VAL A 478 REMARK 465 ARG A 479 REMARK 465 GLY A 553 REMARK 465 TYR A 554 REMARK 465 HIS A 555 REMARK 465 TRP A 556 REMARK 465 LEU A 557 REMARK 465 PRO A 558 REMARK 465 SER A 559 REMARK 465 ASN A 560 REMARK 465 LYS A 561 REMARK 465 LEU A 562 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 5 REMARK 465 SER B 6 REMARK 465 GLY B 52 REMARK 465 ALA B 53 REMARK 465 GLU B 54 REMARK 465 SER B 55 REMARK 465 CYS B 56 REMARK 465 ASP B 57 REMARK 465 ARG B 58 REMARK 465 ILE B 59 REMARK 465 ASN B 60 REMARK 465 CYS B 61 REMARK 465 LYS B 62 REMARK 465 VAL B 63 REMARK 465 LYS B 552 REMARK 465 GLY B 553 REMARK 465 TYR B 554 REMARK 465 HIS B 555 REMARK 465 TRP B 556 REMARK 465 LEU B 557 REMARK 465 PRO B 558 REMARK 465 SER B 559 REMARK 465 ASN B 560 REMARK 465 LYS B 561 REMARK 465 LEU B 562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 872 O HOH A 1014 2.04 REMARK 500 O HOH A 957 O HOH A 1034 2.05 REMARK 500 O HOH A 880 O HOH A 1077 2.06 REMARK 500 O HOH B 934 O HOH B 1008 2.08 REMARK 500 O HOH A 1037 O HOH A 1090 2.09 REMARK 500 O PRO A 366 O HOH A 701 2.11 REMARK 500 O HOH A 968 O HOH A 1021 2.11 REMARK 500 O HOH A 1045 O HOH A 1055 2.11 REMARK 500 O HOH A 775 O HOH A 818 2.12 REMARK 500 O HOH B 975 O HOH B 983 2.12 REMARK 500 O HOH A 785 O HOH B 948 2.12 REMARK 500 O HOH B 810 O HOH B 961 2.13 REMARK 500 O HOH A 1035 O HOH B 989 2.13 REMARK 500 O HOH B 881 O HOH B 1052 2.14 REMARK 500 O HOH B 1020 O HOH B 1057 2.14 REMARK 500 OE2 GLU B 428 O HOH B 701 2.15 REMARK 500 O HOH B 956 O HOH B 970 2.16 REMARK 500 OD1 ASP A 82 O HOH A 702 2.17 REMARK 500 NE ARG B 224 O HOH B 702 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG B 51 CD1 TYR B 476 2556 1.87 REMARK 500 NE ARG B 51 CE1 TYR B 476 2556 1.95 REMARK 500 NE ARG B 51 CG TYR B 476 2556 2.00 REMARK 500 NE ARG B 51 CD2 TYR B 476 2556 2.05 REMARK 500 NE ARG B 51 CZ TYR B 476 2556 2.11 REMARK 500 O HOH A 770 O HOH B 952 4546 2.16 REMARK 500 NE ARG B 51 CE2 TYR B 476 2556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 51 CD ARG B 51 NE 0.220 REMARK 500 ARG B 51 NE ARG B 51 CZ 0.146 REMARK 500 TYR B 476 CG TYR B 476 CD2 0.413 REMARK 500 TYR B 476 CG TYR B 476 CD1 0.430 REMARK 500 TYR B 476 CD1 TYR B 476 CE1 0.919 REMARK 500 TYR B 476 CE1 TYR B 476 CZ 0.558 REMARK 500 TYR B 476 CZ TYR B 476 CE2 0.594 REMARK 500 TYR B 476 CE2 TYR B 476 CD2 0.893 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 51 CG - CD - NE ANGL. DEV. = 20.1 DEGREES REMARK 500 ARG B 51 CD - NE - CZ ANGL. DEV. = 29.5 DEGREES REMARK 500 ARG B 51 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 136 58.78 -92.29 REMARK 500 SER A 138 -9.29 73.73 REMARK 500 ALA A 205 34.04 -145.54 REMARK 500 ASN A 311 -64.77 -105.13 REMARK 500 GLU A 370 3.34 -65.82 REMARK 500 VAL A 408 -167.81 -110.08 REMARK 500 LYS B 87 -50.30 -123.82 REMARK 500 ALA B 205 29.40 -142.23 REMARK 500 ARG B 224 10.42 -141.26 REMARK 500 ASN B 311 -64.80 -104.27 REMARK 500 LEU B 456 -153.34 58.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZHT RELATED DB: PDB REMARK 900 APO FORM REMARK 900 RELATED ID: 7ZHU RELATED DB: PDB REMARK 900 COMPLEXED WITH NADP(H) REMARK 900 RELATED ID: 7ZHV RELATED DB: PDB REMARK 900 COMPLEXED WITH G6P REMARK 900 RELATED ID: 7ZHW RELATED DB: PDB REMARK 900 COMPLEXED WITH NADP(H) AND G6P REMARK 900 RELATED ID: 7ZHX RELATED DB: PDB REMARK 900 N-DOMAIN DELETION MUTANT REMARK 900 RELATED ID: 7ZHZ RELATED DB: PDB REMARK 900 C138S MUTANT COMPLEXED WITH NADP(H) AND G6P DBREF 7ZHY A 1 562 UNP A2CIL3 A2CIL3_LEIDO 1 562 DBREF 7ZHY B 1 562 UNP A2CIL3 A2CIL3_LEIDO 1 562 SEQADV 7ZHY SER A 138 UNP A2CIL3 CYS 138 ENGINEERED MUTATION SEQADV 7ZHY SER B 138 UNP A2CIL3 CYS 138 ENGINEERED MUTATION SEQRES 1 A 562 MET SER GLU GLU GLN SER HIS ALA ASP GLN ASP ALA TYR SEQRES 2 A 562 VAL ALA ASP VAL ASP GLY ILE LEU ASP VAL LEU ARG ALA SEQRES 3 A 562 GLN VAL LEU GLU ARG LYS PRO ASP ASP ILE PHE GLN PHE SEQRES 4 A 562 ILE SER LYS SER ALA LEU SER LEU GLN LYS ASP ARG GLY SEQRES 5 A 562 ALA GLU SER CYS ASP ARG ILE ASN CYS LYS VAL LYS ASP SEQRES 6 A 562 GLU GLN LYS SER ARG ALA LEU THR ILE ILE VAL PHE GLY SEQRES 7 A 562 ALA SER GLY ASP LEU ALA LYS LYS LYS THR PHE PRO ALA SEQRES 8 A 562 LEU PHE ASP LEU TYR CYS GLY GLY LEU LEU PRO PRO GLU SEQRES 9 A 562 VAL ASN ILE ILE GLY TYR ALA ARG THR LYS VAL ASP ASP SEQRES 10 A 562 VAL GLU LYS TRP LYS HIS GLU THR LEU MET LYS TYR PHE SEQRES 11 A 562 SER ASN LEU SER GLU ARG GLY SER HIS ALA GLU ASP PHE SEQRES 12 A 562 LEU LYS HIS ILE SER TYR PHE CYS GLY ALA TYR ASP SER SEQRES 13 A 562 VAL ASP ASP PHE LYS ARG LEU ASP ALA VAL ILE ARG GLU SEQRES 14 A 562 LYS GLU ASN ALA PHE LYS GLY PRO GLU LYS GLY GLY ASN SEQRES 15 A 562 ARG LEU PHE TYR LEU ALA LEU PRO PRO SER VAL PHE ALA SEQRES 16 A 562 SER VAL CYS GLU SER ILE HIS LYS GLY ALA MET PRO GLN SEQRES 17 A 562 GLU VAL GLY GLY TRP VAL ARG VAL ILE ILE GLU LYS PRO SEQRES 18 A 562 PHE GLY ARG ASP THR LYS SER SER ALA GLU LEU SER GLN SEQRES 19 A 562 ALA LEU GLU PRO PHE PHE ASP GLU SER GLN LEU TYR ARG SEQRES 20 A 562 ILE ASP HIS TYR LEU GLY LYS GLU MET VAL GLN ASN ILE SEQRES 21 A 562 ILE THR THR ARG PHE ALA ASN ARG ILE PHE SER ALA VAL SEQRES 22 A 562 TRP ASN ALA SER ASN ILE ALA CYS VAL GLN ILE THR PHE SEQRES 23 A 562 LYS GLU THR ILE GLY THR GLU GLY ARG GLY GLY TYR PHE SEQRES 24 A 562 ASP ASN ILE GLY ILE ILE ARG ASP VAL MET GLN ASN HIS SEQRES 25 A 562 LEU THR GLN ILE LEU ALA LEU LEU ALA MET GLU LYS PRO SEQRES 26 A 562 ARG SER LEU ASP ALA GLU CYS ILE ARG ASP GLU LYS VAL SEQRES 27 A 562 SER VAL LEU LYS CYS ILE GLU PRO ILE THR LYS GLU ASN SEQRES 28 A 562 CYS VAL LEU GLY GLN TYR THR ALA SER ALA ASP GLY SER SEQRES 29 A 562 ILE PRO GLY TYR LEU GLU ASP VAL THR VAL PRO GLU GLY SEQRES 30 A 562 SER THR CYS PRO THR PHE ALA VAL MET ARG LEU ASN ILE SEQRES 31 A 562 ASN ASN ASP ARG TRP ALA GLY VAL PRO PHE ILE LEU LYS SEQRES 32 A 562 ALA GLY LYS ALA VAL GLU GLN LYS TYR VAL ALA ILE ARG SEQRES 33 A 562 ILE GLN PHE ARG ASP GLU VAL HIS PRO TYR GLY GLU ALA SEQRES 34 A 562 THR GLN ARG ASN GLU LEU VAL ILE ARG ALA GLN PRO SER SEQRES 35 A 562 GLU ALA MET TYR VAL LYS ILE THR THR LYS VAL PRO GLY SEQRES 36 A 562 LEU SER GLY ASP LEU ARG GLN THR HIS GLN THR GLU LEU SEQRES 37 A 562 ASP LEU THR TYR HIS THR ARG TYR ASP VAL ARG LEU PRO SEQRES 38 A 562 ASP ALA TYR GLU SER LEU ILE ASN ASP ALA LEU LEU GLY SEQRES 39 A 562 ASN SER THR ASN PHE VAL ARG LYS ASP GLU LEU ASP VAL SEQRES 40 A 562 ALA TRP ARG ILE PHE THR PRO LEU LEU HIS GLN ILE ASP SEQRES 41 A 562 SER GLY GLU ILE LYS PRO ILE PRO TYR GLN ALA GLY THR SEQRES 42 A 562 ARG GLY PRO LYS GLU ALA ASP GLU PHE ILE ALA ASN ASN SEQRES 43 A 562 GLY PHE LYS HIS GLN LYS GLY TYR HIS TRP LEU PRO SER SEQRES 44 A 562 ASN LYS LEU SEQRES 1 B 562 MET SER GLU GLU GLN SER HIS ALA ASP GLN ASP ALA TYR SEQRES 2 B 562 VAL ALA ASP VAL ASP GLY ILE LEU ASP VAL LEU ARG ALA SEQRES 3 B 562 GLN VAL LEU GLU ARG LYS PRO ASP ASP ILE PHE GLN PHE SEQRES 4 B 562 ILE SER LYS SER ALA LEU SER LEU GLN LYS ASP ARG GLY SEQRES 5 B 562 ALA GLU SER CYS ASP ARG ILE ASN CYS LYS VAL LYS ASP SEQRES 6 B 562 GLU GLN LYS SER ARG ALA LEU THR ILE ILE VAL PHE GLY SEQRES 7 B 562 ALA SER GLY ASP LEU ALA LYS LYS LYS THR PHE PRO ALA SEQRES 8 B 562 LEU PHE ASP LEU TYR CYS GLY GLY LEU LEU PRO PRO GLU SEQRES 9 B 562 VAL ASN ILE ILE GLY TYR ALA ARG THR LYS VAL ASP ASP SEQRES 10 B 562 VAL GLU LYS TRP LYS HIS GLU THR LEU MET LYS TYR PHE SEQRES 11 B 562 SER ASN LEU SER GLU ARG GLY SER HIS ALA GLU ASP PHE SEQRES 12 B 562 LEU LYS HIS ILE SER TYR PHE CYS GLY ALA TYR ASP SER SEQRES 13 B 562 VAL ASP ASP PHE LYS ARG LEU ASP ALA VAL ILE ARG GLU SEQRES 14 B 562 LYS GLU ASN ALA PHE LYS GLY PRO GLU LYS GLY GLY ASN SEQRES 15 B 562 ARG LEU PHE TYR LEU ALA LEU PRO PRO SER VAL PHE ALA SEQRES 16 B 562 SER VAL CYS GLU SER ILE HIS LYS GLY ALA MET PRO GLN SEQRES 17 B 562 GLU VAL GLY GLY TRP VAL ARG VAL ILE ILE GLU LYS PRO SEQRES 18 B 562 PHE GLY ARG ASP THR LYS SER SER ALA GLU LEU SER GLN SEQRES 19 B 562 ALA LEU GLU PRO PHE PHE ASP GLU SER GLN LEU TYR ARG SEQRES 20 B 562 ILE ASP HIS TYR LEU GLY LYS GLU MET VAL GLN ASN ILE SEQRES 21 B 562 ILE THR THR ARG PHE ALA ASN ARG ILE PHE SER ALA VAL SEQRES 22 B 562 TRP ASN ALA SER ASN ILE ALA CYS VAL GLN ILE THR PHE SEQRES 23 B 562 LYS GLU THR ILE GLY THR GLU GLY ARG GLY GLY TYR PHE SEQRES 24 B 562 ASP ASN ILE GLY ILE ILE ARG ASP VAL MET GLN ASN HIS SEQRES 25 B 562 LEU THR GLN ILE LEU ALA LEU LEU ALA MET GLU LYS PRO SEQRES 26 B 562 ARG SER LEU ASP ALA GLU CYS ILE ARG ASP GLU LYS VAL SEQRES 27 B 562 SER VAL LEU LYS CYS ILE GLU PRO ILE THR LYS GLU ASN SEQRES 28 B 562 CYS VAL LEU GLY GLN TYR THR ALA SER ALA ASP GLY SER SEQRES 29 B 562 ILE PRO GLY TYR LEU GLU ASP VAL THR VAL PRO GLU GLY SEQRES 30 B 562 SER THR CYS PRO THR PHE ALA VAL MET ARG LEU ASN ILE SEQRES 31 B 562 ASN ASN ASP ARG TRP ALA GLY VAL PRO PHE ILE LEU LYS SEQRES 32 B 562 ALA GLY LYS ALA VAL GLU GLN LYS TYR VAL ALA ILE ARG SEQRES 33 B 562 ILE GLN PHE ARG ASP GLU VAL HIS PRO TYR GLY GLU ALA SEQRES 34 B 562 THR GLN ARG ASN GLU LEU VAL ILE ARG ALA GLN PRO SER SEQRES 35 B 562 GLU ALA MET TYR VAL LYS ILE THR THR LYS VAL PRO GLY SEQRES 36 B 562 LEU SER GLY ASP LEU ARG GLN THR HIS GLN THR GLU LEU SEQRES 37 B 562 ASP LEU THR TYR HIS THR ARG TYR ASP VAL ARG LEU PRO SEQRES 38 B 562 ASP ALA TYR GLU SER LEU ILE ASN ASP ALA LEU LEU GLY SEQRES 39 B 562 ASN SER THR ASN PHE VAL ARG LYS ASP GLU LEU ASP VAL SEQRES 40 B 562 ALA TRP ARG ILE PHE THR PRO LEU LEU HIS GLN ILE ASP SEQRES 41 B 562 SER GLY GLU ILE LYS PRO ILE PRO TYR GLN ALA GLY THR SEQRES 42 B 562 ARG GLY PRO LYS GLU ALA ASP GLU PHE ILE ALA ASN ASN SEQRES 43 B 562 GLY PHE LYS HIS GLN LYS GLY TYR HIS TRP LEU PRO SER SEQRES 44 B 562 ASN LYS LEU HET NDP A 601 48 HET EDO A 602 4 HET SO4 A 603 5 HET EDO A 604 4 HET PEG A 605 7 HET EDO A 606 4 HET PEG A 607 7 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET PEG A 611 7 HET EDO A 612 4 HET EDO A 613 4 HET PGE A 614 10 HET EDO A 615 4 HET EDO A 616 4 HET EDO A 617 4 HET SO4 A 618 5 HET SO4 A 619 5 HET SO4 A 620 5 HET EDO B 601 4 HET NDP B 602 48 HET EDO B 603 4 HET SO4 B 604 5 HET EDO B 605 4 HET EDO B 606 4 HET SO4 B 607 5 HET EDO B 608 4 HET PEG B 609 7 HET EDO B 610 4 HET EDO B 611 4 HET PEG B 612 7 HET EDO B 613 4 HET EDO B 614 4 HET EDO B 615 4 HET EDO B 616 4 HET EDO B 617 4 HET EDO B 618 4 HET EDO B 619 4 HET EDO B 620 4 HET EDO B 621 4 HET EDO B 622 4 HET SO4 B 623 5 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 EDO 28(C2 H6 O2) FORMUL 5 SO4 7(O4 S 2-) FORMUL 7 PEG 5(C4 H10 O3) FORMUL 16 PGE C6 H14 O4 FORMUL 46 HOH *753(H2 O) HELIX 1 AA1 ALA A 8 LYS A 32 1 25 HELIX 2 AA2 ASP A 35 ARG A 51 1 17 HELIX 3 AA3 GLY A 81 LYS A 87 1 7 HELIX 4 AA4 LYS A 87 GLY A 98 1 12 HELIX 5 AA5 ASP A 117 THR A 125 1 9 HELIX 6 AA6 LEU A 126 PHE A 130 5 5 HELIX 7 AA7 SER A 138 LYS A 145 1 8 HELIX 8 AA8 SER A 156 ALA A 173 1 18 HELIX 9 AA9 PRO A 190 SER A 192 5 3 HELIX 10 AB1 VAL A 193 ALA A 205 1 13 HELIX 11 AB2 ASP A 225 GLU A 237 1 13 HELIX 12 AB3 GLY A 253 ALA A 266 1 14 HELIX 13 AB4 ASN A 267 TRP A 274 1 8 HELIX 14 AB5 ARG A 295 ASP A 300 1 6 HELIX 15 AB6 ILE A 302 MET A 309 1 8 HELIX 16 AB7 ASN A 311 MET A 322 1 12 HELIX 17 AB8 ASP A 329 LYS A 342 1 14 HELIX 18 AB9 THR A 348 GLU A 350 5 3 HELIX 19 AC1 TYR A 426 THR A 430 5 5 HELIX 20 AC2 ASP A 482 GLY A 494 1 13 HELIX 21 AC3 ARG A 501 SER A 521 1 21 HELIX 22 AC4 PRO A 536 ASN A 546 1 11 HELIX 23 AC5 ALA B 8 LYS B 32 1 25 HELIX 24 AC6 ASP B 35 ARG B 51 1 17 HELIX 25 AC7 GLY B 81 LYS B 87 1 7 HELIX 26 AC8 LYS B 87 GLY B 98 1 12 HELIX 27 AC9 ASP B 117 THR B 125 1 9 HELIX 28 AD1 LEU B 126 PHE B 130 5 5 HELIX 29 AD2 ASN B 132 LYS B 145 1 14 HELIX 30 AD3 SER B 156 ALA B 173 1 18 HELIX 31 AD4 PRO B 190 SER B 192 5 3 HELIX 32 AD5 VAL B 193 ALA B 205 1 13 HELIX 33 AD6 ASP B 225 GLU B 237 1 13 HELIX 34 AD7 GLY B 253 ALA B 266 1 14 HELIX 35 AD8 ASN B 267 TRP B 274 1 8 HELIX 36 AD9 ARG B 295 ASN B 301 1 7 HELIX 37 AE1 ILE B 302 MET B 309 1 8 HELIX 38 AE2 ASN B 311 MET B 322 1 12 HELIX 39 AE3 ASP B 329 LYS B 342 1 14 HELIX 40 AE4 THR B 348 GLU B 350 5 3 HELIX 41 AE5 TYR B 426 THR B 430 5 5 HELIX 42 AE6 ASP B 482 GLY B 494 1 13 HELIX 43 AE7 ARG B 501 SER B 521 1 21 HELIX 44 AE8 PRO B 536 ASN B 545 1 10 SHEET 1 AA1 6 ILE A 147 CYS A 151 0 SHEET 2 AA1 6 ASN A 106 ALA A 111 1 N GLY A 109 O PHE A 150 SHEET 3 AA1 6 LEU A 72 PHE A 77 1 N ILE A 74 O ILE A 108 SHEET 4 AA1 6 ASN A 182 LEU A 187 1 O TYR A 186 N ILE A 75 SHEET 5 AA1 6 VAL A 214 ILE A 218 1 O ILE A 217 N PHE A 185 SHEET 6 AA1 6 LEU A 245 ARG A 247 1 O TYR A 246 N VAL A 216 SHEET 1 AA2 9 THR A 463 TYR A 472 0 SHEET 2 AA2 9 ALA A 444 LYS A 452 -1 N VAL A 447 O LEU A 468 SHEET 3 AA2 9 GLU A 434 GLN A 440 -1 N ARG A 438 O ALA A 444 SHEET 4 AA2 9 TYR A 412 PHE A 419 -1 N ILE A 417 O LEU A 435 SHEET 5 AA2 9 ILE A 279 LYS A 287 -1 N ALA A 280 O GLN A 418 SHEET 6 AA2 9 PRO A 399 GLY A 405 1 O ILE A 401 N VAL A 282 SHEET 7 AA2 9 PHE A 383 ASN A 389 -1 N LEU A 388 O PHE A 400 SHEET 8 AA2 9 CYS A 352 THR A 358 -1 N VAL A 353 O VAL A 385 SHEET 9 AA2 9 ILE A 527 GLN A 530 1 O TYR A 529 N THR A 358 SHEET 1 AA3 6 ILE B 147 CYS B 151 0 SHEET 2 AA3 6 ASN B 106 ALA B 111 1 N GLY B 109 O PHE B 150 SHEET 3 AA3 6 LEU B 72 PHE B 77 1 N VAL B 76 O TYR B 110 SHEET 4 AA3 6 ASN B 182 LEU B 187 1 O TYR B 186 N ILE B 75 SHEET 5 AA3 6 VAL B 214 ILE B 218 1 O ARG B 215 N PHE B 185 SHEET 6 AA3 6 LEU B 245 ARG B 247 1 O TYR B 246 N VAL B 216 SHEET 1 AA4 9 THR B 463 ASP B 469 0 SHEET 2 AA4 9 ALA B 444 LYS B 452 -1 N VAL B 447 O LEU B 468 SHEET 3 AA4 9 GLU B 434 GLN B 440 -1 N ARG B 438 O ALA B 444 SHEET 4 AA4 9 TYR B 412 PHE B 419 -1 N ILE B 417 O LEU B 435 SHEET 5 AA4 9 ILE B 279 LYS B 287 -1 N CYS B 281 O GLN B 418 SHEET 6 AA4 9 PRO B 399 GLY B 405 1 O ILE B 401 N VAL B 282 SHEET 7 AA4 9 PHE B 383 ASN B 389 -1 N LEU B 388 O PHE B 400 SHEET 8 AA4 9 CYS B 352 THR B 358 -1 N VAL B 353 O VAL B 385 SHEET 9 AA4 9 ILE B 527 GLN B 530 1 O ILE B 527 N LEU B 354 CISPEP 1 LYS A 220 PRO A 221 0 2.13 CISPEP 2 HIS A 424 PRO A 425 0 2.12 CISPEP 3 GLN A 440 PRO A 441 0 3.40 CISPEP 4 LEU A 480 PRO A 481 0 -11.81 CISPEP 5 LYS B 220 PRO B 221 0 -1.32 CISPEP 6 HIS B 424 PRO B 425 0 2.82 CISPEP 7 GLN B 440 PRO B 441 0 5.32 CRYST1 223.170 65.690 119.930 90.00 120.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004481 0.000000 0.002666 0.00000 SCALE2 0.000000 0.015223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009702 0.00000