HEADER HYDROLASE 12-APR-22 7ZJV TITLE STRUCTURE OF HUMAN USPL1 IN COVALENT COMPLEX WITH DELTAN-SUMO2/3-PA TITLE 2 PROBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUMO-SPECIFIC ISOPEPTIDASE USPL1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 2; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: SUMO-2,HSMT3,SMT3 HOMOLOG 2,SUMO-3,SENTRIN-2,UBIQUITIN-LIKE COMPND 9 PROTEIN SMT3B,SMT3B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SUMO2, SMT3B, SMT3H2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS USP, SUMO, UBIQUITIN, PROBE, UBIQUITIN-LIKE MODIFIER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHAO,M.GERSCH REVDAT 4 15-NOV-23 7ZJV 1 JRNL REVDAT 3 11-OCT-23 7ZJV 1 JRNL REVDAT 2 04-OCT-23 7ZJV 1 JRNL REVDAT 1 27-SEP-23 7ZJV 0 JRNL AUTH Z.ZHAO,R.O'DEA,K.WENDRICH,N.KAZI,M.GERSCH JRNL TITL NATIVE SEMISYNTHESIS OF ISOPEPTIDE-LINKED SUBSTRATES FOR JRNL TITL 2 SPECIFICITY ANALYSIS OF DEUBIQUITINASES AND UBL PROTEASES. JRNL REF J.AM.CHEM.SOC. V. 145 20801 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37712884 JRNL DOI 10.1021/JACS.3C04062 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8000 - 5.1700 1.00 2734 158 0.2036 0.2543 REMARK 3 2 5.1700 - 4.1100 1.00 2695 166 0.1902 0.1983 REMARK 3 3 4.1000 - 3.5900 1.00 2752 126 0.2212 0.2344 REMARK 3 4 3.5800 - 3.2600 1.00 2730 145 0.2463 0.2658 REMARK 3 5 3.2600 - 3.0200 1.00 2760 130 0.2909 0.3211 REMARK 3 6 3.0200 - 2.8500 1.00 2736 143 0.2947 0.3420 REMARK 3 7 2.8500 - 2.7000 1.00 2701 152 0.3275 0.4122 REMARK 3 8 2.7000 - 2.5900 1.00 2725 123 0.3257 0.4679 REMARK 3 9 2.5900 - 2.4900 1.00 2770 132 0.3454 0.3911 REMARK 3 10 2.4900 - 2.4000 1.00 2713 155 0.3584 0.4290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.461 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2690 REMARK 3 ANGLE : 1.133 3661 REMARK 3 CHIRALITY : 0.070 406 REMARK 3 PLANARITY : 0.007 476 REMARK 3 DIHEDRAL : 23.159 928 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7311 22.3431 27.0494 REMARK 3 T TENSOR REMARK 3 T11: 1.5766 T22: 0.8965 REMARK 3 T33: 1.1866 T12: -0.1993 REMARK 3 T13: -0.7110 T23: 0.1490 REMARK 3 L TENSOR REMARK 3 L11: 1.9747 L22: 5.2281 REMARK 3 L33: 3.2213 L12: 1.0578 REMARK 3 L13: 1.6494 L23: 1.2954 REMARK 3 S TENSOR REMARK 3 S11: -0.6562 S12: -0.0479 S13: 0.9191 REMARK 3 S21: 1.2450 S22: -0.4489 S23: -1.0165 REMARK 3 S31: -1.8744 S32: 1.2441 S33: 0.7074 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9150 11.8744 14.3404 REMARK 3 T TENSOR REMARK 3 T11: 0.6436 T22: 0.5017 REMARK 3 T33: 0.7933 T12: 0.0490 REMARK 3 T13: -0.1090 T23: 0.1227 REMARK 3 L TENSOR REMARK 3 L11: 4.6598 L22: 3.8911 REMARK 3 L33: 9.4235 L12: -1.9256 REMARK 3 L13: 4.0865 L23: -2.3737 REMARK 3 S TENSOR REMARK 3 S11: 0.2020 S12: -0.3162 S13: -0.5630 REMARK 3 S21: 0.2215 S22: 0.1535 S23: 0.2864 REMARK 3 S31: -0.0985 S32: -0.4600 S33: -0.3003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7209 -1.0266 -4.0328 REMARK 3 T TENSOR REMARK 3 T11: 1.1625 T22: 0.7322 REMARK 3 T33: 1.1770 T12: 0.4248 REMARK 3 T13: -0.1832 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 5.0283 L22: 7.5536 REMARK 3 L33: 9.2335 L12: -4.8742 REMARK 3 L13: 0.4739 L23: 4.5114 REMARK 3 S TENSOR REMARK 3 S11: -0.5064 S12: -0.2329 S13: -1.3432 REMARK 3 S21: 1.4763 S22: 0.2227 S23: -0.8451 REMARK 3 S31: 0.5152 S32: -0.4875 S33: 0.3492 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6093 1.8276 -4.8438 REMARK 3 T TENSOR REMARK 3 T11: 1.2569 T22: 1.6905 REMARK 3 T33: 0.8863 T12: 0.3737 REMARK 3 T13: -0.0070 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 6.9987 L22: 2.2740 REMARK 3 L33: 4.5449 L12: -2.9239 REMARK 3 L13: -5.7367 L23: 2.5537 REMARK 3 S TENSOR REMARK 3 S11: 1.1355 S12: 3.4397 S13: -0.6064 REMARK 3 S21: -1.0048 S22: -1.4337 S23: -0.6268 REMARK 3 S31: -1.3744 S32: -0.3542 S33: 0.4142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9024 9.7401 -3.4618 REMARK 3 T TENSOR REMARK 3 T11: 0.7939 T22: 1.4341 REMARK 3 T33: 0.8413 T12: 0.3162 REMARK 3 T13: -0.1243 T23: 0.1746 REMARK 3 L TENSOR REMARK 3 L11: 6.8997 L22: 5.5707 REMARK 3 L33: 3.7970 L12: 4.5241 REMARK 3 L13: 0.3851 L23: 2.6470 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: 1.5796 S13: -0.1121 REMARK 3 S21: -0.6215 S22: -0.1316 S23: 0.1185 REMARK 3 S31: 0.9185 S32: 2.2895 S33: 0.2242 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8353 7.1213 1.3082 REMARK 3 T TENSOR REMARK 3 T11: 0.9226 T22: 1.2621 REMARK 3 T33: 0.8143 T12: 0.2678 REMARK 3 T13: -0.0803 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 8.1088 L22: 6.1041 REMARK 3 L33: 6.2374 L12: -2.2893 REMARK 3 L13: -5.2967 L23: 4.6847 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: 1.1309 S13: -0.1427 REMARK 3 S21: -1.0161 S22: -0.2289 S23: -0.2660 REMARK 3 S31: 0.2718 S32: 0.7279 S33: 0.2373 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292122396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.902 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28746 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.85800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7ZJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CHES PH 8.9, 34% PEG600, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.44000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.85400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.85400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.72000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.85400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.85400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.16000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.85400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.85400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.72000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.85400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.85400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.16000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 216 REMARK 465 PRO A 217 REMARK 465 CYS A 218 REMARK 465 THR A 219 REMARK 465 SER A 220 REMARK 465 PHE A 221 REMARK 465 PRO A 222 REMARK 465 GLN A 223 REMARK 465 ALA A 224 REMARK 465 SER A 260 REMARK 465 LYS A 261 REMARK 465 SER A 283 REMARK 465 GLN A 284 REMARK 465 LEU A 285 REMARK 465 SER A 286 REMARK 465 GLY A 287 REMARK 465 VAL A 288 REMARK 465 LYS A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 ASP A 292 REMARK 465 CYS A 293 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 LEU A 296 REMARK 465 ILE A 501 REMARK 465 SER A 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 THR A 256 OG1 CG2 REMARK 470 LEU A 258 CG CD1 CD2 REMARK 470 CYS A 259 SG REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 THR A 278 OG1 CG2 REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 TYR A 281 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 282 OG1 CG2 REMARK 470 THR A 297 OG1 CG2 REMARK 470 SER A 298 OG REMARK 470 ILE A 300 CG1 CG2 CD1 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 GLN A 363 CG CD OE1 NE2 REMARK 470 ASN A 399 CG OD1 ND2 REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 GLN A 432 CG CD OE1 NE2 REMARK 470 LEU A 469 CG CD1 CD2 REMARK 470 LYS A 475 CG CD CE NZ REMARK 470 ARG A 481 CD NE CZ NH1 NH2 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 LYS A 500 CG CD CE NZ REMARK 470 ILE B 17 CG1 CG2 CD1 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 LEU B 39 CG CD1 CD2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 64 CG CD OE1 NE2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 232 139.72 -170.81 REMARK 500 ALA A 453 19.33 58.62 REMARK 500 ASN A 455 10.55 -155.55 REMARK 500 CYS A 471 77.80 -110.54 REMARK 500 GLU A 498 -145.79 -132.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 361 SG REMARK 620 2 CYS A 364 SG 103.4 REMARK 620 3 CYS A 397 SG 105.4 114.4 REMARK 620 4 CYS A 400 SG 118.3 105.3 110.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZJU RELATED DB: PDB REMARK 900 7ZJU CONTAINS THE SAME ENZYME COMPLEX WITH A DIFFERENT SUMO PROBE DBREF 7ZJV A 218 502 UNP Q5W0Q7 USPL1_HUMAN 218 502 DBREF 7ZJV B 17 91 UNP P61956 SUMO2_HUMAN 18 92 SEQADV 7ZJV GLY A 216 UNP Q5W0Q7 EXPRESSION TAG SEQADV 7ZJV PRO A 217 UNP Q5W0Q7 EXPRESSION TAG SEQADV 7ZJV MET B 16 UNP P61956 INITIATING METHIONINE SEQRES 1 A 287 GLY PRO CYS THR SER PHE PRO GLN ALA LEU CYS VAL GLN SEQRES 2 A 287 TRP LYS ASN ALA TYR ALA LEU CYS TRP LEU ASP CYS ILE SEQRES 3 A 287 LEU SER ALA LEU VAL HIS SER GLU GLU LEU LYS ASN THR SEQRES 4 A 287 VAL THR GLY LEU CYS SER LYS GLU GLU SER ILE PHE TRP SEQRES 5 A 287 ARG LEU LEU THR LYS TYR ASN GLN ALA ASN THR LEU LEU SEQRES 6 A 287 TYR THR SER GLN LEU SER GLY VAL LYS ASP GLY ASP CYS SEQRES 7 A 287 LYS LYS LEU THR SER GLU ILE PHE ALA GLU ILE GLU THR SEQRES 8 A 287 CYS LEU ASN GLU VAL ARG ASP GLU ILE PHE ILE SER LEU SEQRES 9 A 287 GLN PRO GLN LEU ARG CYS THR LEU GLY ASP MET GLU SER SEQRES 10 A 287 PRO VAL PHE ALA PHE PRO LEU LEU LEU LYS LEU GLU THR SEQRES 11 A 287 HIS ILE GLU LYS LEU PHE LEU TYR SER PHE SER TRP ASP SEQRES 12 A 287 PHE GLU CYS SER GLN CYS GLY HIS GLN TYR GLN ASN ARG SEQRES 13 A 287 HIS MET LYS SER LEU VAL THR PHE THR ASN VAL ILE PRO SEQRES 14 A 287 GLU TRP HIS PRO LEU ASN ALA ALA HIS PHE GLY PRO CYS SEQRES 15 A 287 ASN ASN CYS ASN SER LYS SER GLN ILE ARG LYS MET VAL SEQRES 16 A 287 LEU GLU LYS VAL SER PRO ILE PHE MET LEU HIS PHE VAL SEQRES 17 A 287 GLU GLY LEU PRO GLN ASN ASP LEU GLN HIS TYR ALA PHE SEQRES 18 A 287 HIS PHE GLU GLY CYS LEU TYR GLN ILE THR SER VAL ILE SEQRES 19 A 287 GLN TYR ARG ALA ASN ASN HIS PHE ILE THR TRP ILE LEU SEQRES 20 A 287 ASP ALA ASP GLY SER TRP LEU GLU CYS ASP ASP LEU LYS SEQRES 21 A 287 GLY PRO CYS SER GLU ARG HIS LYS LYS PHE GLU VAL PRO SEQRES 22 A 287 ALA SER GLU ILE HIS ILE VAL ILE TRP GLU ARG LYS ILE SEQRES 23 A 287 SER SEQRES 1 B 76 MET ILE ASN LEU LYS VAL ALA GLY GLN ASP GLY SER VAL SEQRES 2 B 76 VAL GLN PHE LYS ILE LYS ARG HIS THR PRO LEU SER LYS SEQRES 3 B 76 LEU MET LYS ALA TYR CYS GLU ARG GLN GLY LEU SER MET SEQRES 4 B 76 ARG GLN ILE ARG PHE ARG PHE ASP GLY GLN PRO ILE ASN SEQRES 5 B 76 GLU THR ASP THR PRO ALA GLN LEU GLU MET GLU ASP GLU SEQRES 6 B 76 ASP THR ILE ASP VAL PHE GLN GLN GLN THR GLY HET ZN A 801 1 HET AYE A 802 4 HET CL A 803 1 HET CL A 804 1 HET CL A 805 1 HET CL B 101 1 HET CL B 102 1 HETNAM ZN ZINC ION HETNAM AYE PROP-2-EN-1-AMINE HETNAM CL CHLORIDE ION HETSYN AYE ALLYLAMINE FORMUL 3 ZN ZN 2+ FORMUL 4 AYE C3 H7 N FORMUL 5 CL 5(CL 1-) FORMUL 10 HOH *28(H2 O) HELIX 1 AA1 LEU A 235 HIS A 247 1 13 HELIX 2 AA2 SER A 248 LEU A 258 1 11 HELIX 3 AA3 SER A 264 THR A 282 1 19 HELIX 4 AA4 SER A 298 ARG A 324 1 27 HELIX 5 AA5 SER A 332 LYS A 342 1 11 HELIX 6 AA6 GLU A 344 LYS A 349 1 6 HELIX 7 AA7 HIS A 387 ASN A 390 5 4 HELIX 8 AA8 ASP A 430 ALA A 435 5 6 HELIX 9 AA9 ASP A 472 GLY A 476 5 5 HELIX 10 AB1 PRO A 488 SER A 490 5 3 HELIX 11 AB2 LEU B 39 GLY B 51 1 13 HELIX 12 AB3 SER B 53 ARG B 55 5 3 SHEET 1 AA1 4 GLN A 367 LYS A 374 0 SHEET 2 AA1 4 TYR A 353 GLU A 360 -1 N PHE A 359 O TYR A 368 SHEET 3 AA1 4 GLN A 405 LYS A 413 -1 O LYS A 408 N ASP A 358 SHEET 4 AA1 4 ALA A 391 GLY A 395 -1 N ALA A 391 O MET A 409 SHEET 1 AA2 5 VAL A 377 PHE A 379 0 SHEET 2 AA2 5 PHE A 418 PHE A 422 1 O HIS A 421 N PHE A 379 SHEET 3 AA2 5 ILE A 492 GLU A 498 -1 O TRP A 497 N PHE A 418 SHEET 4 AA2 5 CYS A 441 ARG A 452 -1 N ILE A 449 O ILE A 494 SHEET 5 AA2 5 PHE A 436 PHE A 438 -1 N PHE A 436 O TYR A 443 SHEET 1 AA3 7 VAL A 377 PHE A 379 0 SHEET 2 AA3 7 PHE A 418 PHE A 422 1 O HIS A 421 N PHE A 379 SHEET 3 AA3 7 ILE A 492 GLU A 498 -1 O TRP A 497 N PHE A 418 SHEET 4 AA3 7 CYS A 441 ARG A 452 -1 N ILE A 449 O ILE A 494 SHEET 5 AA3 7 HIS A 456 LEU A 462 -1 O ILE A 458 N GLN A 450 SHEET 6 AA3 7 TRP A 468 CYS A 471 -1 O CYS A 471 N THR A 459 SHEET 7 AA3 7 GLU A 480 HIS A 482 -1 O GLU A 480 N GLU A 470 SHEET 1 AA4 5 VAL B 28 ILE B 33 0 SHEET 2 AA4 5 ILE B 17 GLY B 23 -1 N LEU B 19 O PHE B 31 SHEET 3 AA4 5 ASP B 81 GLN B 87 1 O ILE B 83 N LYS B 20 SHEET 4 AA4 5 ILE B 57 PHE B 61 -1 N ARG B 58 O PHE B 86 SHEET 5 AA4 5 GLN B 64 PRO B 65 -1 O GLN B 64 N PHE B 61 LINK SG CYS A 236 C2 AYE A 802 1555 1555 1.77 LINK N1 AYE A 802 C GLY B 91 1555 1555 1.30 LINK SG CYS A 361 ZN ZN A 801 1555 1555 2.33 LINK SG CYS A 364 ZN ZN A 801 1555 1555 2.32 LINK SG CYS A 397 ZN ZN A 801 1555 1555 2.34 LINK SG CYS A 400 ZN ZN A 801 1555 1555 2.32 CRYST1 95.708 95.708 82.880 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010448 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012066 0.00000