HEADER BIOSYNTHETIC PROTEIN 19-APR-22 7ZM9 TITLE KETOSYNTHASE DOMAIN 3 OF BREVIBACILLUS BREVIS ORPHAN BGC11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYKETIDE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CSD IN STRUCUTRE IS AN OXIDIZED CYS, AND THEREFORE NOT COMPND 6 A SEQUENCE MISSMATCH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS BREVIS NBRC 100599; SOURCE 3 ORGANISM_TAXID: 358681; SOURCE 4 STRAIN: 47 / JCM 6285 / NBRC 100599; SOURCE 5 GENE: BBR47_39880; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KETOSYNTHASE, POLYKETIDE SYNTHASE, CLAISEN CONDENSATION, THIOLASE KEYWDS 2 FOLD, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.U.TITTES,D.A.HERBST,R.P.JAKOB,T.MAIER REVDAT 3 07-FEB-24 7ZM9 1 REMARK REVDAT 2 05-APR-23 7ZM9 1 JRNL REVDAT 1 21-SEP-22 7ZM9 0 JRNL AUTH Y.U.TITTES,D.A.HERBST,S.F.X.MARTIN,H.MUNOZ-HERNANDEZ, JRNL AUTH 2 R.P.JAKOB,T.MAIER JRNL TITL THE STRUCTURE OF A POLYKETIDE SYNTHASE BIMODULE CORE. JRNL REF SCI ADV V. 8 O6918 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 36129979 JRNL DOI 10.1126/SCIADV.ABO6918 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 145021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.380 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.4830 - 3.9040 1.00 10408 145 0.1335 0.1328 REMARK 3 2 3.9040 - 3.0988 1.00 10278 144 0.1351 0.1594 REMARK 3 3 3.0988 - 2.7070 1.00 10268 143 0.1522 0.1791 REMARK 3 4 2.7070 - 2.4595 1.00 10248 144 0.1369 0.1606 REMARK 3 5 2.4595 - 2.2832 1.00 10268 143 0.1328 0.1492 REMARK 3 6 2.2832 - 2.1486 1.00 10172 143 0.1392 0.1629 REMARK 3 7 2.1486 - 2.0410 1.00 10231 143 0.1456 0.1576 REMARK 3 8 2.0410 - 1.9522 1.00 10203 142 0.1577 0.1641 REMARK 3 9 1.9522 - 1.8770 1.00 10156 142 0.1953 0.2002 REMARK 3 10 1.8770 - 1.8122 1.00 10177 143 0.2178 0.2263 REMARK 3 11 1.8122 - 1.7556 1.00 10172 142 0.2474 0.3041 REMARK 3 12 1.7556 - 1.7054 0.99 10113 141 0.2865 0.3134 REMARK 3 13 1.7054 - 1.6605 1.00 10172 143 0.3323 0.3438 REMARK 3 14 1.6605 - 1.6200 0.99 10155 142 0.3808 0.4014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 535 THROUGH 578 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9582 41.9509 41.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.3203 T22: 0.3505 REMARK 3 T33: 0.5399 T12: -0.0065 REMARK 3 T13: 0.0723 T23: 0.1082 REMARK 3 L TENSOR REMARK 3 L11: 1.0555 L22: 2.3616 REMARK 3 L33: 1.2120 L12: -0.6529 REMARK 3 L13: 0.2822 L23: 0.6620 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.1328 S13: 0.4652 REMARK 3 S21: -0.2455 S22: -0.0604 S23: -0.4018 REMARK 3 S31: -0.1303 S32: 0.1891 S33: -0.0186 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 579 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6235 52.3285 40.7536 REMARK 3 T TENSOR REMARK 3 T11: 0.3643 T22: 0.3139 REMARK 3 T33: 0.5526 T12: -0.0018 REMARK 3 T13: 0.0546 T23: 0.1102 REMARK 3 L TENSOR REMARK 3 L11: 1.4995 L22: 1.6749 REMARK 3 L33: 1.1313 L12: -0.1692 REMARK 3 L13: 0.0939 L23: 0.1488 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.0600 S13: 0.6736 REMARK 3 S21: -0.1730 S22: -0.0592 S23: -0.2825 REMARK 3 S31: -0.3023 S32: 0.0371 S33: 0.0675 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 641 THROUGH 888 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1237 34.9460 49.3975 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.2498 REMARK 3 T33: 0.2789 T12: 0.0002 REMARK 3 T13: -0.0072 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.7604 L22: 1.6249 REMARK 3 L33: 0.8699 L12: -0.2408 REMARK 3 L13: 0.0444 L23: -0.2179 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: -0.0623 S13: 0.2445 REMARK 3 S21: 0.0224 S22: -0.0776 S23: -0.3285 REMARK 3 S31: 0.0200 S32: 0.0830 S33: 0.0208 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 889 THROUGH 923 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4914 32.5999 55.4306 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.4603 REMARK 3 T33: 0.7152 T12: -0.0004 REMARK 3 T13: -0.1038 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 1.3428 L22: 3.0392 REMARK 3 L33: 2.5139 L12: -0.0634 REMARK 3 L13: -0.1232 L23: 0.7703 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: -0.1906 S13: 0.2457 REMARK 3 S21: 0.1333 S22: -0.0393 S23: -0.9882 REMARK 3 S31: -0.0576 S32: 0.4427 S33: 0.0186 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 924 THROUGH 965 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9783 19.9610 47.3595 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.3034 REMARK 3 T33: 0.4135 T12: 0.0613 REMARK 3 T13: 0.0287 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.7877 L22: 2.7642 REMARK 3 L33: 1.4260 L12: -0.8105 REMARK 3 L13: -0.2312 L23: 0.2415 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.1845 S13: -0.4363 REMARK 3 S21: -0.1245 S22: -0.2327 S23: -0.2646 REMARK 3 S31: 0.3124 S32: 0.1997 S33: 0.0414 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 966 THROUGH 1000 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8692 34.9569 16.8712 REMARK 3 T TENSOR REMARK 3 T11: 0.6776 T22: 0.6891 REMARK 3 T33: 0.3673 T12: 0.0754 REMARK 3 T13: 0.2418 T23: 0.1963 REMARK 3 L TENSOR REMARK 3 L11: 1.4669 L22: 1.6471 REMARK 3 L33: 1.8704 L12: -0.7075 REMARK 3 L13: -0.2205 L23: 1.3414 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.2203 S13: 0.1928 REMARK 3 S21: -0.1652 S22: 0.1208 S23: -0.4161 REMARK 3 S31: 0.0054 S32: 0.5118 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1001 THROUGH 1057 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8946 34.3097 13.2319 REMARK 3 T TENSOR REMARK 3 T11: 0.8402 T22: 0.8771 REMARK 3 T33: 0.3865 T12: 0.0977 REMARK 3 T13: 0.2938 T23: 0.1614 REMARK 3 L TENSOR REMARK 3 L11: 1.0178 L22: 0.5536 REMARK 3 L33: 1.2676 L12: 0.0778 REMARK 3 L13: -0.0536 L23: 0.2658 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: 0.6678 S13: 0.2030 REMARK 3 S21: -0.5147 S22: 0.0313 S23: -0.4826 REMARK 3 S31: 0.0644 S32: 0.4376 S33: 0.0918 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1058 THROUGH 1096 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5558 28.4015 4.6011 REMARK 3 T TENSOR REMARK 3 T11: 1.1038 T22: 0.9913 REMARK 3 T33: 0.4278 T12: 0.0782 REMARK 3 T13: 0.1085 T23: 0.0690 REMARK 3 L TENSOR REMARK 3 L11: 3.8543 L22: 2.3017 REMARK 3 L33: 2.4642 L12: 0.1472 REMARK 3 L13: 0.5467 L23: 0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: 0.5052 S13: -0.1006 REMARK 3 S21: -0.3927 S22: -0.0112 S23: 0.4885 REMARK 3 S31: 0.2663 S32: -0.3369 S33: 0.0127 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1097 THROUGH 1130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8844 34.8323 22.6069 REMARK 3 T TENSOR REMARK 3 T11: 0.5812 T22: 0.5579 REMARK 3 T33: 0.3502 T12: 0.0239 REMARK 3 T13: 0.1454 T23: 0.1444 REMARK 3 L TENSOR REMARK 3 L11: 1.5421 L22: 0.8828 REMARK 3 L33: 1.7741 L12: 0.0831 REMARK 3 L13: 0.3510 L23: 0.1655 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.5620 S13: 0.0792 REMARK 3 S21: -0.4102 S22: 0.0785 S23: 0.0690 REMARK 3 S31: 0.2511 S32: 0.1872 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292117810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 60.483 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Z37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL DROP OF 12 MG/ML PROTEIN IN REMARK 280 BUFFER (20 MM HEPES KOH PH 8.0, 250 MM NACL, 5 % V/V GLYCEROL, 5 REMARK 280 MM DTT) WITH 0.2 UL OF RESERVOIR SOLUTION (1 % W/V PEG MME 2K, 1 REMARK 280 M NA SUCCINATE), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.39000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.39000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.34500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -4.39933 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.17247 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 533 REMARK 465 SER A 534 REMARK 465 ARG A 1131 REMARK 465 SER A 1132 REMARK 465 VAL A 1133 REMARK 465 SER A 1134 REMARK 465 SER A 1135 REMARK 465 SER A 1136 REMARK 465 THR A 1137 REMARK 465 GLY A 1138 REMARK 465 VAL A 1139 REMARK 465 GLY A 1140 REMARK 465 VAL A 1141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1664 O HOH A 1688 2.04 REMARK 500 O HOH A 1718 O HOH A 1727 2.05 REMARK 500 O HOH A 1358 O HOH A 1745 2.09 REMARK 500 O HOH A 1308 O HOH A 1780 2.12 REMARK 500 O HOH A 1414 O HOH A 1539 2.19 REMARK 500 O HOH A 1608 O HOH A 1747 2.19 REMARK 500 O1 PEG A 1201 O HOH A 1301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 770 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 815 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 826 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 568 30.06 -95.07 REMARK 500 ASP A 608 72.63 -117.94 REMARK 500 CYS A 648 108.78 -163.71 REMARK 500 MET A 660 -10.39 -145.30 REMARK 500 ALA A 693 -133.13 56.90 REMARK 500 ASP A 753 31.19 -148.98 REMARK 500 CYS A 870 30.44 -94.73 REMARK 500 GLU A 871 -123.40 58.17 REMARK 500 MET A1022 -168.80 -100.07 REMARK 500 GLU A1109 -169.80 68.60 REMARK 500 LYS A1123 78.19 -102.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZM9 A 533 1141 UNP C0ZGQ6 C0ZGQ6_BREBN 533 1141 SEQRES 1 A 609 PRO SER SER VAL VAL ARG ASP VAL ALA ILE ILE GLY LEU SEQRES 2 A 609 SER GLY ARG TYR PRO GLN ALA LYS ASN VAL ASP GLU PHE SEQRES 3 A 609 TRP ASN ARG LEU LYS GLU GLY LYS ASN CYS ILE SER GLU SEQRES 4 A 609 ILE PRO LYS ASP ARG TRP ASP TRP GLN SER PHE PHE ASP SEQRES 5 A 609 GLU GLU LYS GLY LYS LYS GLU SER MET TYR THR LYS TRP SEQRES 6 A 609 GLY GLY PHE ILE ASP ASP MET ASP LYS PHE ASP PRO LEU SEQRES 7 A 609 PHE PHE GLN ILE SER PRO LYS GLU ALA GLU GLU MET ASP SEQRES 8 A 609 PRO GLN GLU ARG LEU PHE LEU GLN GLU ALA TYR ALA SER SEQRES 9 A 609 ILE GLU ASP ALA GLY TYR THR PRO THR THR LEU CYS GLU SEQRES 10 A 609 SER ARG LYS VAL GLY VAL PHE VAL GLY VAL MET ASN GLY SEQRES 11 A 609 ASN TYR PRO THR GLY ALA THR TYR TRP SER ILE ALA ASN SEQRES 12 A 609 ARG LEU SER TYR LEU LEU ASN PHE GLN GLY PRO SER VAL SEQRES 13 A 609 ALA VAL ASP THR ALA CSD SER ALA SER LEU THR ALA ILE SEQRES 14 A 609 HIS PHE ALA LEU GLU SER LEU TYR SER GLY THR SER GLU SEQRES 15 A 609 CYS ALA ILE ALA GLY GLY VAL ASN LEU ILE VAL ASP PRO SEQRES 16 A 609 VAL HIS TYR MET LYS LEU SER ALA LEU THR MET LEU SER SEQRES 17 A 609 PRO SER ASN GLN CYS LYS SER PHE GLY ASP GLN ALA ASP SEQRES 18 A 609 GLY PHE VAL ASP GLY GLU GLY VAL GLY ALA ILE VAL LEU SEQRES 19 A 609 LYS PRO LEU ASP LYS ALA ILE ALA ASP GLY ASP HIS ILE SEQRES 20 A 609 TYR GLY VAL ILE LYS GLY SER MET MET ASN ALA GLY GLY SEQRES 21 A 609 LYS THR ASN GLY TYR THR VAL PRO ASN PRO GLN ALA GLN SEQRES 22 A 609 ALA GLN LEU VAL ALA ASP ALA LEU GLN ARG ALA ASN VAL SEQRES 23 A 609 HIS ALA ARG THR VAL SER TYR LEU GLU ALA HIS GLY THR SEQRES 24 A 609 GLY THR GLU LEU GLY ASP PRO ILE GLU VAL ALA GLY LEU SEQRES 25 A 609 THR ARG ALA PHE GLU LYS ASP THR GLN ASP LYS GLN PHE SEQRES 26 A 609 CYS ALA LEU GLY SER ALA LYS SER ASN ILE GLY HIS CYS SEQRES 27 A 609 GLU SER ALA ALA GLY ILE ALA GLY VAL THR LYS ILE LEU SEQRES 28 A 609 LEU GLN LEU LYS HIS ALA GLN LEU VAL PRO SER LEU HIS SEQRES 29 A 609 SER ARG THR LEU ASN PRO ASN ILE ASP PHE THR LYS THR SEQRES 30 A 609 PRO PHE VAL VAL GLN GLN GLU LEU ALA GLU TRP ARG ARG SEQRES 31 A 609 PRO ILE VAL GLU ILE ASN GLY THR THR ASN GLU TYR PRO SEQRES 32 A 609 ARG ILE ALA GLY ILE SER SER PHE GLY ALA GLY GLY SER SEQRES 33 A 609 ASN ALA HIS VAL ILE ILE GLU GLU TYR ILE PRO GLU GLU SEQRES 34 A 609 GLN LYS GLN SER SER LEU LYS ILE THR PRO GLN ASN PRO SEQRES 35 A 609 ALA ILE PHE VAL LEU SER ALA LYS ASN ALA GLU ARG LEU SEQRES 36 A 609 TYR GLU ILE VAL GLN GLN LEU LEU ALA PHE ILE GLN GLU SEQRES 37 A 609 HIS SER LEU SER ASP GLU HIS LEU ALA ASP MET ALA TYR SEQRES 38 A 609 THR LEU GLN VAL GLY ARG VAL ALA MET GLU GLU ARG ILE SEQRES 39 A 609 ALA VAL ILE ALA GLY THR MET LYS GLU LEU GLN GLN LYS SEQRES 40 A 609 LEU THR ALA TYR VAL LYS GLY GLN GLU HIS ILE ALA ASP SEQRES 41 A 609 LEU TYR ARG GLY GLN VAL ASN ARG ASN GLN GLU MET LEU SEQRES 42 A 609 ASP ILE LEU THR SER ASP ASP GLU LEU GLU GLU THR ILE SEQRES 43 A 609 ALA ARG TRP MET GLU ARG GLY LYS TYR SER LYS LEU LEU SEQRES 44 A 609 ASP LEU TRP VAL LYS GLY LEU SER ILE ASP TRP ASN LYS SEQRES 45 A 609 LEU TYR GLN GLU GLU GLN PRO GLY ARG ILE SER LEU PRO SEQRES 46 A 609 THR TYR PRO PHE ALA LYS GLU SER TYR TRP THR HIS ALA SEQRES 47 A 609 ARG SER VAL SER SER SER THR GLY VAL GLY VAL MODRES 7ZM9 CSD A 694 CYS MODIFIED RESIDUE HET CSD A 694 13 HET PEG A1201 17 HET PEG A1202 17 HET PEG A1203 17 HET PEG A1204 17 HET GOL A1205 14 HET GOL A1206 14 HET GOL A1207 14 HETNAM CSD 3-SULFINOALANINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 PEG 4(C4 H10 O3) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *518(H2 O) HELIX 1 AA1 ASN A 554 GLU A 564 1 11 HELIX 2 AA2 ASP A 578 PHE A 582 5 5 HELIX 3 AA3 ASP A 608 GLN A 613 5 6 HELIX 4 AA4 SER A 615 MET A 622 1 8 HELIX 5 AA5 ASP A 623 GLY A 641 1 19 HELIX 6 AA6 THR A 669 LEU A 681 1 13 HELIX 7 AA7 THR A 692 CSD A 694 5 3 HELIX 8 AA8 SER A 695 SER A 710 1 16 HELIX 9 AA9 ASP A 726 LEU A 736 1 11 HELIX 10 AB1 LEU A 769 ASP A 775 1 7 HELIX 11 AB2 ASN A 801 ASN A 817 1 17 HELIX 12 AB3 HIS A 819 VAL A 823 5 5 HELIX 13 AB4 LEU A 835 LYS A 850 1 16 HELIX 14 AB5 ALA A 863 GLY A 868 1 6 HELIX 15 AB6 CYS A 870 SER A 872 5 3 HELIX 16 AB7 ALA A 873 ALA A 889 1 17 HELIX 17 AB8 ASP A 905 THR A 909 5 5 HELIX 18 AB9 ASN A 983 HIS A 1001 1 19 HELIX 19 AC1 SER A 1004 GLU A 1006 5 3 HELIX 20 AC2 HIS A 1007 GLY A 1018 1 12 HELIX 21 AC3 THR A 1032 LYS A 1045 1 14 HELIX 22 AC4 ASN A 1061 THR A 1069 1 9 HELIX 23 AC5 ASP A 1071 GLY A 1085 1 15 HELIX 24 AC6 LYS A 1086 VAL A 1095 1 10 HELIX 25 AC7 ASP A 1101 TYR A 1106 5 6 SHEET 1 AA111 SER A 687 VAL A 690 0 SHEET 2 AA111 VAL A 653 GLY A 658 1 N VAL A 657 O VAL A 690 SHEET 3 AA111 CYS A 715 ASN A 722 1 O ILE A 717 N GLY A 654 SHEET 4 AA111 GLY A 760 PRO A 768 -1 O LEU A 766 N ALA A 716 SHEET 5 AA111 VAL A 540 ARG A 548 -1 N ALA A 541 O LYS A 767 SHEET 6 AA111 GLY A 781 ALA A 790 -1 O ILE A 783 N VAL A 540 SHEET 7 AA111 SER A 948 GLU A 955 -1 O GLU A 955 N VAL A 782 SHEET 8 AA111 ILE A 937 PHE A 943 -1 N ALA A 938 O ILE A 954 SHEET 9 AA111 TYR A 825 GLU A 827 1 N GLU A 827 O GLY A 939 SHEET 10 AA111 CYS A 858 GLY A 861 1 O ALA A 859 N LEU A 826 SHEET 11 AA111 PHE A 911 VAL A 913 1 O VAL A 912 N LEU A 860 SHEET 1 AA2 2 SER A 570 GLU A 571 0 SHEET 2 AA2 2 TRP A 597 GLY A 598 -1 O GLY A 598 N SER A 570 SHEET 1 AA3 2 LYS A 606 PHE A 607 0 SHEET 2 AA3 2 GLU A1124 SER A1125 -1 O GLU A1124 N PHE A 607 SHEET 1 AA4 2 GLN A 890 LEU A 891 0 SHEET 2 AA4 2 ALA A 918 GLU A 919 -1 O ALA A 918 N LEU A 891 SHEET 1 AA5 2 ILE A 924 ILE A 927 0 SHEET 2 AA5 2 THR A 930 GLU A 933 -1 O ASN A 932 N VAL A 925 SHEET 1 AA6 3 ALA A 975 ALA A 981 0 SHEET 2 AA6 3 GLU A1024 ALA A1030 -1 O VAL A1028 N PHE A 977 SHEET 3 AA6 3 LEU A1053 GLN A1057 -1 O TYR A1054 N ALA A1027 LINK C ALA A 693 N CSD A 694 1555 1555 1.35 LINK C CSD A 694 N SER A 695 1555 1555 1.33 CRYST1 126.780 92.690 99.270 90.00 92.54 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007888 0.000000 0.000349 0.00000 SCALE2 0.000000 0.010789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010083 0.00000