HEADER IMMUNE SYSTEM 29-APR-22 7ZQI TITLE MHC CLASS I FROM A WILD BIRD IN COMPLEX WITH A NONAMERIC PEPTIDE P2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: EXON 2-4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: N-TERMINAL HIS6-TAG, TEV-CLEAVAGE SITE; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: INOSINE MONOPHOSPHATE DEHYDROGENASE-RELATED PROTEIN; COMPND 13 CHAIN: F; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: SYNTHETIC PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACROCEPHALUS ARUNDINACEUS; SOURCE 3 ORGANISM_COMMON: GREAT REED WARBLER; SOURCE 4 ORGANISM_TAXID: 39621; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ACROCEPHALUS ARUNDINACEUS; SOURCE 11 ORGANISM_COMMON: GREAT REED WARBLER; SOURCE 12 ORGANISM_TAXID: 39621; SOURCE 13 GENE: B2M; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: VIBRIO SP.; SOURCE 20 ORGANISM_TAXID: 678 KEYWDS MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I, ACROCEPHALUS ARUNDINACEUS, KEYWDS 2 ANTIGEN PRESENTATION, CELL-SURFACE RECEPTOR, NONAMERIC PEPTIDE FROM KEYWDS 3 VIBRIO, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.ELTSCHKNER,S.MELLINGER,S.BUUS,M.NIELSEN,K.M.PAULSSON,K.LINDKVIST- AUTHOR 2 PETERSSON,H.WESTERDAHL REVDAT 3 07-FEB-24 7ZQI 1 REMARK REVDAT 2 22-NOV-23 7ZQI 1 JRNL REVDAT 1 10-MAY-23 7ZQI 0 JRNL AUTH S.ELTSCHKNER,S.MELLINGER,S.BUUS,M.NIELSEN,K.M.PAULSSON, JRNL AUTH 2 K.LINDKVIST-PETERSSON,H.WESTERDAHL JRNL TITL THE STRUCTURE OF SONGBIRD MHC CLASS I REVEALS ANTIGEN JRNL TITL 2 BINDING THAT IS FLEXIBLE AT THE N-TERMINUS AND STATIC AT THE JRNL TITL 3 C-TERMINUS. JRNL REF FRONT IMMUNOL V. 14 09059 2023 JRNL REFN ESSN 1664-3224 JRNL PMID 37483599 JRNL DOI 10.3389/FIMMU.2023.1209059 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.95000 REMARK 3 B22 (A**2) : 1.87000 REMARK 3 B33 (A**2) : 1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.893 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3267 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2867 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4442 ; 1.837 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6639 ; 1.389 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 7.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;31.961 ;21.117 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;19.370 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;22.587 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3717 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 767 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1559 ; 1.785 ; 3.030 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1558 ; 1.784 ; 3.030 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1944 ; 2.706 ; 4.534 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1945 ; 2.706 ; 4.534 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1708 ; 2.469 ; 3.338 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1709 ; 2.470 ; 3.340 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2498 ; 3.843 ; 4.895 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3596 ; 6.477 ;35.263 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3597 ; 6.477 ;35.279 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8730 7.8384 -16.0005 REMARK 3 T TENSOR REMARK 3 T11: 0.1021 T22: 0.0422 REMARK 3 T33: 0.0791 T12: 0.0281 REMARK 3 T13: -0.0694 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 5.9295 L22: 4.3026 REMARK 3 L33: 1.2851 L12: -2.7298 REMARK 3 L13: -0.9997 L23: 0.2034 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.2439 S13: -0.2943 REMARK 3 S21: -0.4575 S22: -0.0878 S23: 0.5607 REMARK 3 S31: -0.1754 S32: -0.2058 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6805 2.3112 -7.0128 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.1141 REMARK 3 T33: 0.2671 T12: 0.0271 REMARK 3 T13: 0.0120 T23: 0.0959 REMARK 3 L TENSOR REMARK 3 L11: 5.1723 L22: 6.2862 REMARK 3 L33: 2.6406 L12: 3.0004 REMARK 3 L13: 2.1580 L23: 2.9614 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.5450 S13: -0.4498 REMARK 3 S21: 0.2659 S22: -0.0090 S23: 0.6644 REMARK 3 S31: 0.3092 S32: -0.1732 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2437 25.3326 -8.6926 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.0677 REMARK 3 T33: 0.2454 T12: 0.0262 REMARK 3 T13: -0.0080 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 11.1520 L22: 11.2931 REMARK 3 L33: 10.9251 L12: 0.3458 REMARK 3 L13: -0.9651 L23: 1.8615 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: -0.4212 S13: 0.7819 REMARK 3 S21: 1.0215 S22: -0.1250 S23: 0.3314 REMARK 3 S31: -0.6874 S32: -0.2925 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7858 12.7984 -17.6225 REMARK 3 T TENSOR REMARK 3 T11: 0.0043 T22: 0.0483 REMARK 3 T33: 0.0153 T12: -0.0084 REMARK 3 T13: -0.0038 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 3.0801 L22: 8.4998 REMARK 3 L33: 2.2326 L12: -1.0886 REMARK 3 L13: 0.0506 L23: 1.1708 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.1952 S13: 0.0983 REMARK 3 S21: -0.0235 S22: -0.1552 S23: -0.1626 REMARK 3 S31: -0.0500 S32: 0.0684 S33: 0.1152 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5800 11.4900 -19.5567 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.1375 REMARK 3 T33: 0.0683 T12: -0.0282 REMARK 3 T13: -0.0006 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.8288 L22: 9.1365 REMARK 3 L33: 1.6327 L12: -2.8416 REMARK 3 L13: 0.1173 L23: -0.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: 0.2025 S13: 0.0939 REMARK 3 S21: -0.3215 S22: -0.1575 S23: -0.3326 REMARK 3 S31: -0.0238 S32: 0.1250 S33: 0.0887 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8576 9.4235 -17.4144 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1639 REMARK 3 T33: 0.0909 T12: 0.0353 REMARK 3 T13: 0.0148 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 4.3006 L22: 11.3580 REMARK 3 L33: 0.1570 L12: -3.7431 REMARK 3 L13: 0.5333 L23: -1.3143 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: 0.1009 S13: -0.1671 REMARK 3 S21: -0.0802 S22: -0.0256 S23: -0.0648 REMARK 3 S31: 0.0140 S32: 0.0215 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9764 16.6030 -10.8984 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.0590 REMARK 3 T33: 0.1202 T12: -0.0213 REMARK 3 T13: -0.0247 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 5.0893 L22: 6.3268 REMARK 3 L33: 7.9606 L12: -1.2593 REMARK 3 L13: 1.7998 L23: -3.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.1566 S12: 0.2518 S13: 0.6058 REMARK 3 S21: -0.0171 S22: -0.2308 S23: -0.1862 REMARK 3 S31: -0.3086 S32: 0.4840 S33: 0.3874 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0357 -3.5735 -11.4416 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.0291 REMARK 3 T33: 0.1935 T12: 0.0441 REMARK 3 T13: -0.0286 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 12.6190 L22: 9.3921 REMARK 3 L33: 2.5514 L12: 10.1318 REMARK 3 L13: 3.0696 L23: 2.3880 REMARK 3 S TENSOR REMARK 3 S11: 0.2799 S12: -0.2054 S13: -0.3163 REMARK 3 S21: 0.4978 S22: -0.1397 S23: 0.0049 REMARK 3 S31: 0.2988 S32: 0.1036 S33: -0.1402 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5706 -10.0781 -29.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.2228 REMARK 3 T33: 0.3008 T12: 0.0053 REMARK 3 T13: -0.0063 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.1003 L22: 2.4596 REMARK 3 L33: 14.7847 L12: -1.6317 REMARK 3 L13: 4.0135 L23: -6.0272 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: 0.0133 S13: -0.0459 REMARK 3 S21: -0.0314 S22: -0.0177 S23: -0.0293 REMARK 3 S31: 0.0316 S32: 0.0273 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9479 4.7984 -46.3779 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.3724 REMARK 3 T33: 0.3040 T12: -0.1156 REMARK 3 T13: 0.0051 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 1.6633 L22: 4.4086 REMARK 3 L33: 8.2993 L12: 2.1214 REMARK 3 L13: -2.3156 L23: -0.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.2295 S13: 0.0890 REMARK 3 S21: -0.2638 S22: 0.2996 S23: -0.0929 REMARK 3 S31: -0.5261 S32: -0.0918 S33: -0.2389 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3772 0.5619 -48.9944 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.4044 REMARK 3 T33: 0.3077 T12: -0.0418 REMARK 3 T13: -0.0116 T23: -0.1519 REMARK 3 L TENSOR REMARK 3 L11: 1.6738 L22: 0.5149 REMARK 3 L33: 9.3255 L12: 0.3971 REMARK 3 L13: -1.7626 L23: 0.1073 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.3578 S13: -0.1174 REMARK 3 S21: -0.2445 S22: 0.1842 S23: -0.1754 REMARK 3 S31: 0.1676 S32: 0.6714 S33: -0.1789 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 4 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2025 34.8842 -18.1205 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.1986 REMARK 3 T33: 0.2956 T12: 0.0210 REMARK 3 T13: -0.0048 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 9.6047 L22: 3.3127 REMARK 3 L33: 4.7853 L12: 1.5230 REMARK 3 L13: 3.5632 L23: -0.6233 REMARK 3 S TENSOR REMARK 3 S11: -0.1101 S12: 0.4339 S13: -0.5900 REMARK 3 S21: -0.0372 S22: 0.2054 S23: 0.0359 REMARK 3 S31: 0.0749 S32: 0.5881 S33: -0.0953 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8776 21.6100 -31.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.1709 REMARK 3 T33: 0.1396 T12: 0.0191 REMARK 3 T13: -0.0372 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 12.1040 L22: 4.9371 REMARK 3 L33: 3.1187 L12: 6.4744 REMARK 3 L13: 1.9441 L23: 2.3198 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.0955 S13: 0.0134 REMARK 3 S21: 0.0557 S22: 0.2007 S23: -0.3543 REMARK 3 S31: -0.2136 S32: 0.1249 S33: -0.2768 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0238 3.7879 -37.7294 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.2122 REMARK 3 T33: 0.1169 T12: -0.0718 REMARK 3 T13: -0.0283 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 11.7809 L22: 7.8044 REMARK 3 L33: 3.5802 L12: 1.8297 REMARK 3 L13: 2.4325 L23: 3.1944 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.3918 S13: -0.6285 REMARK 3 S21: -0.1785 S22: 0.0300 S23: 0.5992 REMARK 3 S31: 0.3916 S32: -0.3899 S33: -0.0280 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2832 18.6805 -27.3212 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.1255 REMARK 3 T33: 0.1324 T12: 0.0492 REMARK 3 T13: -0.0621 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.9837 L22: 8.4247 REMARK 3 L33: 6.8528 L12: 4.1367 REMARK 3 L13: 1.4611 L23: 4.6151 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: -0.0468 S13: 0.2901 REMARK 3 S21: 0.1337 S22: 0.0583 S23: 0.0059 REMARK 3 S31: -0.0242 S32: -0.0203 S33: 0.0689 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 49 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3488 19.0450 -32.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.2169 REMARK 3 T33: 0.1871 T12: 0.0012 REMARK 3 T13: 0.0082 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 13.9966 L22: 1.4452 REMARK 3 L33: 7.1620 L12: 2.1293 REMARK 3 L13: 9.9835 L23: 1.5637 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.1865 S13: 0.2166 REMARK 3 S21: 0.0915 S22: -0.0958 S23: 0.0765 REMARK 3 S31: 0.0317 S32: -0.1791 S33: 0.0757 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8704 14.0228 -26.8986 REMARK 3 T TENSOR REMARK 3 T11: 0.3421 T22: 0.4816 REMARK 3 T33: 0.1793 T12: 0.1076 REMARK 3 T13: 0.2466 T23: 0.0993 REMARK 3 L TENSOR REMARK 3 L11: 11.4229 L22: 0.2702 REMARK 3 L33: 0.2301 L12: 0.7352 REMARK 3 L13: -1.0189 L23: 0.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.2359 S12: 0.0791 S13: 0.1110 REMARK 3 S21: -0.2568 S22: -0.1081 S23: -0.1916 REMARK 3 S31: -0.1358 S32: -0.2557 S33: -0.1279 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9995 13.5277 -24.8059 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.1206 REMARK 3 T33: 0.0519 T12: -0.0198 REMARK 3 T13: -0.0251 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 8.5525 L22: 4.3099 REMARK 3 L33: 1.9857 L12: -0.4237 REMARK 3 L13: -1.3539 L23: -1.0874 REMARK 3 S TENSOR REMARK 3 S11: -0.2231 S12: 0.3374 S13: -0.0944 REMARK 3 S21: -0.0331 S22: 0.1165 S23: -0.0820 REMARK 3 S31: 0.2313 S32: -0.1399 S33: 0.1066 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3577 10.5338 -33.2716 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.1723 REMARK 3 T33: 0.1064 T12: 0.0026 REMARK 3 T13: 0.0185 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 6.5716 L22: 2.7439 REMARK 3 L33: 3.2437 L12: 0.9942 REMARK 3 L13: 1.7912 L23: -0.8161 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.0689 S13: -0.0411 REMARK 3 S21: -0.3597 S22: -0.0471 S23: 0.2552 REMARK 3 S31: 0.5077 S32: -0.1902 S33: 0.0564 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2006 23.8385 -34.8447 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.1827 REMARK 3 T33: 0.3002 T12: 0.0631 REMARK 3 T13: 0.0379 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 10.8029 L22: 7.8055 REMARK 3 L33: 6.4282 L12: 8.4423 REMARK 3 L13: 7.4868 L23: 6.6091 REMARK 3 S TENSOR REMARK 3 S11: -0.4036 S12: 0.4182 S13: 0.6035 REMARK 3 S21: -0.6508 S22: 0.2137 S23: -0.0363 REMARK 3 S31: -0.8423 S32: 0.0631 S33: 0.1899 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 97 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7193 12.4625 -43.0777 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.2309 REMARK 3 T33: 0.1328 T12: 0.0127 REMARK 3 T13: -0.0355 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 6.6072 L22: 11.0433 REMARK 3 L33: 6.0333 L12: 8.0469 REMARK 3 L13: 3.5225 L23: 5.8755 REMARK 3 S TENSOR REMARK 3 S11: -0.3313 S12: 0.2359 S13: 0.0157 REMARK 3 S21: -0.5830 S22: 0.1328 S23: 0.2830 REMARK 3 S31: 0.0657 S32: 0.0365 S33: 0.1985 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 9 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0804 8.5150 -7.6995 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.1146 REMARK 3 T33: 0.0996 T12: 0.0509 REMARK 3 T13: 0.0086 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 6.8234 L22: 8.5184 REMARK 3 L33: 4.1431 L12: 4.8198 REMARK 3 L13: 1.3444 L23: 0.9768 REMARK 3 S TENSOR REMARK 3 S11: 0.1124 S12: -0.2075 S13: -0.4843 REMARK 3 S21: 0.2013 S22: -0.1164 S23: -0.2052 REMARK 3 S31: 0.2909 S32: -0.2287 S33: 0.0040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7ZQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292120811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 67.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GJX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES/MOPS, PH 7.0, 20 MM REMARK 280 MGCL2, 40 MM CACL2, 25 % (V/V) MPD, 25 % (W/V) PEG 1000, 25 % (W/ REMARK 280 V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.60100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.06750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.06750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.60100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 276 REMARK 465 MET B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 VAL B -7 REMARK 465 ASP B -6 REMARK 465 LEU B -5 REMARK 465 GLY B -4 REMARK 465 THR B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 2 CG SD CE REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 GLU B -2 CG CD OE1 OE2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 140 O HOH A 402 1.88 REMARK 500 NE2 GLN A 156 O HOH A 403 2.13 REMARK 500 OD1 ASN A 87 O HOH A 404 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 128 OH TYR B 72 1655 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 122 -68.93 -108.59 REMARK 500 GLU A 149 17.48 59.09 REMARK 500 GLU A 193 53.53 -102.44 REMARK 500 PRO A 209 -159.46 -75.96 REMARK 500 GLU A 274 78.32 -115.08 REMARK 500 ASN B -1 64.54 -116.04 REMARK 500 MET B 5 152.37 109.61 REMARK 500 SER B 60 -166.40 -127.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO B 50 10.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 119 O REMARK 620 2 HOH A 435 O 72.7 REMARK 620 3 LYS B 64 O 98.6 169.5 REMARK 620 4 HOH B 305 O 94.0 91.5 95.1 REMARK 620 5 HOH B 308 O 158.1 85.4 103.0 87.2 REMARK 620 6 HOH B 311 O 95.8 102.6 71.8 164.7 88.1 REMARK 620 N 1 2 3 4 5 DBREF 7ZQI A 3 276 UNP O98187 O98187_ACRAR 26 299 DBREF1 7ZQI B 6 104 UNP A0A076JEK1_ACRAR DBREF2 7ZQI B A0A076JEK1 14 112 DBREF 7ZQI F 1 9 UNP Q9KT74 Q9KT74_VIBCH 17 25 SEQADV 7ZQI MET A 2 UNP O98187 INITIATING METHIONINE SEQADV 7ZQI MET B -17 UNP A0A076JEK INITIATING METHIONINE SEQADV 7ZQI HIS B -16 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI HIS B -15 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI HIS B -14 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI HIS B -13 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI HIS B -12 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI HIS B -11 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI SER B -10 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI SER B -9 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI GLY B -8 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI VAL B -7 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI ASP B -6 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI LEU B -5 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI GLY B -4 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI THR B -3 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI GLU B -2 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI ASN B -1 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI LEU B 0 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI TYR B 1 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI PHE B 2 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI GLN B 3 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI SER B 4 UNP A0A076JEK EXPRESSION TAG SEQADV 7ZQI MET B 5 UNP A0A076JEK EXPRESSION TAG SEQRES 1 A 275 MET VAL LEU HIS SER LEU HIS TYR LEU ASP VAL ALA VAL SEQRES 2 A 275 SER GLU PRO SER PRO GLY ILE PRO GLN PHE VAL ALA MET SEQRES 3 A 275 GLY PHE VAL ASP GLY ILE PRO PHE THR ARG TYR ASP SER SEQRES 4 A 275 GLU ARG GLY ARG MET GLU PRO LEU THR GLU TRP ILE LYS SEQRES 5 A 275 ASP SER ALA ASP PRO GLU TYR TRP ASP SER GLN THR GLN SEQRES 6 A 275 ILE GLY VAL GLY SER GLN HIS VAL TYR ALA ARG SER LEU SEQRES 7 A 275 GLU THR LEU ARG GLU ARG TYR ASN GLN SER GLY GLY LEU SEQRES 8 A 275 HIS THR VAL LEU ARG VAL TYR GLY CYS GLU LEU LEU SER SEQRES 9 A 275 ASP GLY SER VAL ARG GLY SER GLU ARG PHE GLY TYR ASP SEQRES 10 A 275 GLY ARG ASP PHE ILE SER PHE ASP LEU GLU SER GLY ARG SEQRES 11 A 275 PHE MET ALA ALA ASP SER ALA ALA GLU ILE THR ARG ARG SEQRES 12 A 275 ARG TRP GLU HIS GLU GLY ILE VAL ALA GLU ARG GLN THR SEQRES 13 A 275 ASN TYR LEU LYS HIS GLU CYS PRO GLU TRP LEU GLN LYS SEQRES 14 A 275 TYR VAL GLY TYR GLY GLN LYS GLU LEU GLU ARG LYS GLU SEQRES 15 A 275 PRO PRO ASP VAL HIS VAL SER GLY LYS GLU GLU HIS GLY SEQRES 16 A 275 THR LEU ILE LEU SER CYS HIS ALA TYR GLY PHE TYR PRO SEQRES 17 A 275 LYS THR ILE ALA VAL ASN TRP MET LYS GLY ASP GLU ILE SEQRES 18 A 275 TRP ASP GLN GLU THR GLU TRP GLY GLY VAL VAL PRO ASN SEQRES 19 A 275 SER ASP GLY THR PHE HIS THR TRP ALA ARG ILE GLU ALA SEQRES 20 A 275 LEU PRO GLU GLU ARG GLU GLN TYR ARG CYS ARG VAL GLU SEQRES 21 A 275 HIS PRO GLY MET PRO GLU PRO GLY ILE PHE ALA TRP GLU SEQRES 22 A 275 PRO THR SEQRES 1 B 122 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 122 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA GLY GLU SEQRES 3 B 122 ALA PRO LYS VAL GLU VAL TYR ALA ARG SER ARG ALA GLU SEQRES 4 B 122 GLU GLY LYS GLU ASN ILE LEU HIS CYS PHE ILE THR GLY SEQRES 5 B 122 PHE HIS PRO PRO LYS ILE ASP VAL GLU LEU LEU LYS ASN SEQRES 6 B 122 GLY GLU PRO MET PRO GLY VAL THR TYR GLY ASP LEU SER SEQRES 7 B 122 PHE ASN ASP LYS TRP GLN PHE GLN ARG LEU VAL TYR VAL SEQRES 8 B 122 PRO PHE ILE PRO THR ARG GLU ASP ILE PHE THR CYS ARG SEQRES 9 B 122 VAL ALA HIS SER THR MET PRO GLU PRO ARG SER TYR ARG SEQRES 10 B 122 TRP GLU PRO ASP PHE SEQRES 1 F 9 TYR MET THR LEU GLN ALA VAL THR PHE HET MG A 301 1 HET CL A 302 1 HET MPD B 201 8 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 4 MG MG 2+ FORMUL 5 CL CL 1- FORMUL 6 MPD C6 H14 O2 FORMUL 7 HOH *167(H2 O) HELIX 1 AA1 THR A 49 ALA A 56 1 8 HELIX 2 AA2 ASP A 57 TYR A 86 1 30 HELIX 3 AA3 ASP A 136 HIS A 148 1 13 HELIX 4 AA4 GLY A 150 HIS A 162 1 13 HELIX 5 AA5 HIS A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 ARG A 181 1 7 HELIX 7 AA7 ASP A 224 THR A 227 5 4 HELIX 8 AA8 LEU A 249 GLU A 254 5 6 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 ILE A 33 ASP A 39 -1 N ARG A 37 O GLU A 46 SHEET 3 AA1 8 PHE A 24 VAL A 30 -1 N ALA A 26 O TYR A 38 SHEET 4 AA1 8 VAL A 3 VAL A 14 -1 N HIS A 8 O PHE A 29 SHEET 5 AA1 8 THR A 94 LEU A 104 -1 O ARG A 97 N ASP A 11 SHEET 6 AA1 8 VAL A 109 TYR A 117 -1 O ARG A 114 N VAL A 98 SHEET 7 AA1 8 ARG A 120 ASP A 126 -1 O ILE A 123 N PHE A 115 SHEET 8 AA1 8 MET A 133 ALA A 134 -1 O MET A 133 N SER A 124 SHEET 1 AA2 4 ASP A 186 LYS A 192 0 SHEET 2 AA2 4 LEU A 198 PHE A 207 -1 O HIS A 203 N HIS A 188 SHEET 3 AA2 4 PHE A 240 ALA A 248 -1 O THR A 242 N ALA A 204 SHEET 4 AA2 4 GLU A 228 TRP A 229 -1 N GLU A 228 O ARG A 245 SHEET 1 AA3 4 ASP A 186 LYS A 192 0 SHEET 2 AA3 4 LEU A 198 PHE A 207 -1 O HIS A 203 N HIS A 188 SHEET 3 AA3 4 PHE A 240 ALA A 248 -1 O THR A 242 N ALA A 204 SHEET 4 AA3 4 VAL A 233 PRO A 234 -1 N VAL A 233 O HIS A 241 SHEET 1 AA4 4 GLU A 221 ILE A 222 0 SHEET 2 AA4 4 ALA A 213 LYS A 218 -1 N LYS A 218 O GLU A 221 SHEET 3 AA4 4 TYR A 256 GLU A 261 -1 O ARG A 259 N ASN A 215 SHEET 4 AA4 4 GLY A 269 PHE A 271 -1 O PHE A 271 N CYS A 258 SHEET 1 AA5 4 LYS B 11 ALA B 16 0 SHEET 2 AA5 4 ASN B 26 PHE B 35 -1 O PHE B 31 N GLU B 13 SHEET 3 AA5 4 PHE B 67 PHE B 75 -1 O ARG B 69 N ILE B 32 SHEET 4 AA5 4 THR B 55 TYR B 56 -1 N THR B 55 O TYR B 72 SHEET 1 AA6 4 LYS B 11 ALA B 16 0 SHEET 2 AA6 4 ASN B 26 PHE B 35 -1 O PHE B 31 N GLU B 13 SHEET 3 AA6 4 PHE B 67 PHE B 75 -1 O ARG B 69 N ILE B 32 SHEET 4 AA6 4 SER B 60 PHE B 61 -1 N SER B 60 O GLN B 68 SHEET 1 AA7 4 GLU B 49 PRO B 50 0 SHEET 2 AA7 4 ASP B 41 LYS B 46 -1 N LYS B 46 O GLU B 49 SHEET 3 AA7 4 PHE B 83 ALA B 88 -1 O ARG B 86 N GLU B 43 SHEET 4 AA7 4 ARG B 96 ARG B 99 -1 O TYR B 98 N CYS B 85 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.24 SSBOND 2 CYS A 202 CYS A 258 1555 1555 2.04 SSBOND 3 CYS B 30 CYS B 85 1555 1555 2.00 LINK O GLY A 119 MG MG A 301 1555 1555 2.15 LINK MG MG A 301 O HOH A 435 1555 1555 2.33 LINK MG MG A 301 O LYS B 64 1555 1555 2.30 LINK MG MG A 301 O HOH B 305 1555 1555 2.21 LINK MG MG A 301 O HOH B 308 1555 1555 2.23 LINK MG MG A 301 O HOH B 311 1555 1555 2.24 CISPEP 1 TYR A 208 PRO A 209 0 2.10 CISPEP 2 HIS B 36 PRO B 37 0 -7.16 CRYST1 39.202 48.780 202.135 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025509 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004947 0.00000