HEADER TRANSFERASE 11-MAY-22 7ZTL TITLE CRYSTAL STRUCTURE OF A COVALENTLY LINKED AURORA-A N-MYC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AURORA 2,AURORA/IPL1-RELATED KINASE 1,ARK-1,AURORA-RELATED COMPND 5 KINASE 1,HARK1,BREAST TUMOR-AMPLIFIED KINASE,SERINE/THREONINE-PROTEIN COMPND 6 KINASE 15,SERINE/THREONINE-PROTEIN KINASE 6,SERINE/THREONINE-PROTEIN COMPND 7 KINASE AURORA-A; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: N-MYC PROTO-ONCOGENE PROTEIN; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 37,BHLHE37; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS CROSSLINK, PROTEIN-PROTEIN-COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DIEBOLD,H.SCHINDELIN REVDAT 4 06-NOV-24 7ZTL 1 REMARK REVDAT 3 03-APR-24 7ZTL 1 JRNL REVDAT 2 31-JAN-24 7ZTL 1 REMARK REVDAT 1 18-JAN-23 7ZTL 0 JRNL AUTH M.DIEBOLD,L.SCHONEMANN,M.EILERS,C.SOTRIFFER,H.SCHINDELIN JRNL TITL CRYSTAL STRUCTURE OF A COVALENTLY LINKED AURORA-A-MYCN JRNL TITL 2 COMPLEX. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 1 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 36601802 JRNL DOI 10.1107/S2059798322011433 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1700 - 4.2300 1.00 2899 159 0.1409 0.1698 REMARK 3 2 4.2200 - 3.3500 1.00 2781 161 0.1448 0.1602 REMARK 3 3 3.3500 - 2.9300 1.00 2752 136 0.1703 0.2313 REMARK 3 4 2.9300 - 2.6600 1.00 2768 132 0.1785 0.2152 REMARK 3 5 2.6600 - 2.4700 1.00 2667 192 0.1727 0.1970 REMARK 3 6 2.4700 - 2.3300 1.00 2753 132 0.1819 0.2211 REMARK 3 7 2.3300 - 2.2100 1.00 2713 128 0.1839 0.2277 REMARK 3 8 2.2100 - 2.1100 1.00 2736 128 0.1835 0.2360 REMARK 3 9 2.1100 - 2.0300 1.00 2735 128 0.2014 0.2240 REMARK 3 10 2.0300 - 1.9600 1.00 2709 151 0.2343 0.2472 REMARK 3 11 1.9600 - 1.9000 1.00 2704 147 0.3072 0.3485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2449 REMARK 3 ANGLE : 1.030 3324 REMARK 3 CHIRALITY : 0.062 358 REMARK 3 PLANARITY : 0.009 415 REMARK 3 DIHEDRAL : 15.091 356 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9313 26.5427 3.3549 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.3778 REMARK 3 T33: 0.2752 T12: 0.0638 REMARK 3 T13: -0.0153 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 6.9414 L22: 5.9829 REMARK 3 L33: 4.0423 L12: 3.5792 REMARK 3 L13: -0.4675 L23: 0.4656 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: 0.2022 S13: -0.1388 REMARK 3 S21: -0.2586 S22: 0.1847 S23: -0.3520 REMARK 3 S31: 0.1902 S32: 0.5331 S33: -0.1361 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8837 30.0362 -3.5706 REMARK 3 T TENSOR REMARK 3 T11: 0.3266 T22: 0.4325 REMARK 3 T33: 0.2906 T12: -0.0090 REMARK 3 T13: -0.0159 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.2786 L22: 4.4831 REMARK 3 L33: 2.9600 L12: -1.5489 REMARK 3 L13: -1.6764 L23: 2.5845 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: 0.3185 S13: -0.0284 REMARK 3 S21: -0.5430 S22: -0.0526 S23: -0.4114 REMARK 3 S31: 0.0059 S32: 0.1012 S33: -0.0073 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.9655 38.3083 6.3930 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.3303 REMARK 3 T33: 0.3109 T12: 0.0086 REMARK 3 T13: -0.0333 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 3.6766 L22: 1.8404 REMARK 3 L33: 1.9182 L12: -0.4193 REMARK 3 L13: -1.1484 L23: 0.3789 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.2434 S13: 0.2909 REMARK 3 S21: -0.2211 S22: 0.0372 S23: -0.0084 REMARK 3 S31: -0.1524 S32: -0.0981 S33: -0.0711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.6500 44.6952 13.3491 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.3200 REMARK 3 T33: 0.3928 T12: 0.0816 REMARK 3 T13: -0.0057 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.4027 L22: 4.3828 REMARK 3 L33: 3.0451 L12: 0.8930 REMARK 3 L13: -1.3633 L23: -0.3211 REMARK 3 S TENSOR REMARK 3 S11: 0.1153 S12: -0.0242 S13: 0.6011 REMARK 3 S21: 0.0339 S22: 0.0795 S23: 0.1945 REMARK 3 S31: -0.3892 S32: -0.3471 S33: -0.1922 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.2712 19.3652 15.5747 REMARK 3 T TENSOR REMARK 3 T11: 0.5616 T22: 0.4089 REMARK 3 T33: 0.4624 T12: 0.0714 REMARK 3 T13: 0.0048 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 9.2347 L22: 8.7054 REMARK 3 L33: 4.9939 L12: 4.7802 REMARK 3 L13: 4.3798 L23: -1.9948 REMARK 3 S TENSOR REMARK 3 S11: 0.5134 S12: 0.1259 S13: -0.4679 REMARK 3 S21: -0.5332 S22: -0.2879 S23: -0.4665 REMARK 3 S31: 0.2808 S32: 0.5574 S33: -0.1433 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31825 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.15510 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G1X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.4 M MGCL2, 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.19267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.59633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.59633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.19267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 95 REMARK 465 LYS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 PRO A 103 REMARK 465 MET A 104 REMARK 465 SER A 105 REMARK 465 ASP A 106 REMARK 465 TYR A 107 REMARK 465 ASP A 108 REMARK 465 ILE A 109 REMARK 465 PRO A 110 REMARK 465 THR A 111 REMARK 465 THR A 112 REMARK 465 GLU A 113 REMARK 465 ASN A 114 REMARK 465 LEU A 115 REMARK 465 TYR A 116 REMARK 465 PHE A 117 REMARK 465 GLN A 118 REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 MET A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 PRO A 390 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 ALA A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 PHE B 28 REMARK 465 TYR B 29 REMARK 465 PRO B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 32 REMARK 465 ASP B 33 REMARK 465 ASP B 34 REMARK 465 PHE B 35 REMARK 465 TYR B 36 REMARK 465 PHE B 37 REMARK 465 GLY B 38 REMARK 465 GLY B 39 REMARK 465 PRO B 40 REMARK 465 ASP B 41 REMARK 465 SER B 42 REMARK 465 THR B 43 REMARK 465 PRO B 44 REMARK 465 PRO B 45 REMARK 465 GLY B 46 REMARK 465 GLU B 47 REMARK 465 ASP B 48 REMARK 465 ILE B 49 REMARK 465 TRP B 50 REMARK 465 LYS B 51 REMARK 465 LYS B 52 REMARK 465 PHE B 53 REMARK 465 GLU B 54 REMARK 465 LEU B 55 REMARK 465 LEU B 56 REMARK 465 PRO B 57 REMARK 465 THR B 58 REMARK 465 PRO B 59 REMARK 465 PRO B 60 REMARK 465 LEU B 61 REMARK 465 SER B 62 REMARK 465 PRO B 63 REMARK 465 SER B 64 REMARK 465 ARG B 65 REMARK 465 GLY B 66 REMARK 465 PHE B 67 REMARK 465 ALA B 68 REMARK 465 GLU B 69 REMARK 465 HIS B 70 REMARK 465 SER B 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 126 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 LYS A 141 CE NZ REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 LYS A 171 CD CE NZ REMARK 470 GLU A 183 CD OE1 OE2 REMARK 470 ARG A 220 CD NE CZ NH1 NH2 REMARK 470 ARG A 285 NE CZ NH1 NH2 REMARK 470 MET A 305 CE REMARK 470 LYS A 326 CE NZ REMARK 470 ARG A 340 CZ NH1 NH2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 389 CD CE NZ REMARK 470 GLU B 86 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 611 O HOH A 722 2.16 REMARK 500 O HOH A 791 O HOH A 795 2.16 REMARK 500 O HOH A 757 O HOH A 769 2.16 REMARK 500 O HOH A 761 O HOH B 207 2.17 REMARK 500 O HOH A 744 O HOH A 754 2.18 REMARK 500 NZ LYS B 85 O1 JWG B 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 771 O HOH A 775 5565 2.15 REMARK 500 O HOH A 663 O HOH B 208 2564 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 -158.11 -119.92 REMARK 500 SER A 226 -52.60 76.34 REMARK 500 ASP A 256 54.60 -149.14 REMARK 500 ASP A 256 42.04 -149.14 REMARK 500 ILE A 257 44.00 -90.36 REMARK 500 ASP A 274 75.38 58.91 REMARK 500 ALA A 281 72.07 -118.25 REMARK 500 SER A 283 -57.40 -122.62 REMARK 500 LEU A 364 52.78 -92.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 212 DISTANCE = 6.59 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 261 OD1 REMARK 620 2 ASP A 274 OD2 89.4 REMARK 620 3 ADP A 501 O3B 177.7 92.8 REMARK 620 4 ADP A 501 O2A 91.2 95.8 88.1 REMARK 620 5 HOH A 648 O 94.3 81.6 86.5 173.9 REMARK 620 6 HOH A 680 O 83.1 170.9 94.7 89.5 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 274 OD1 REMARK 620 2 ASP A 274 OD2 55.2 REMARK 620 3 ADP A 501 O1B 96.4 79.2 REMARK 620 4 BCN A 506 O4 83.5 132.5 83.9 REMARK 620 5 BCN A 506 O6 84.4 101.3 179.2 96.2 REMARK 620 6 BCN A 506 O21 122.3 72.9 96.8 153.7 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 618 O REMARK 620 2 HOH A 623 O 96.8 REMARK 620 3 HOH A 702 O 86.4 96.6 REMARK 620 4 HOH A 779 O 94.8 89.1 174.1 REMARK 620 5 HOH A 785 O 171.3 91.9 92.7 85.3 REMARK 620 6 HOH A 786 O 95.8 167.3 84.4 89.7 75.5 REMARK 620 N 1 2 3 4 5 DBREF 7ZTL A 122 403 UNP O14965 AURKA_HUMAN 122 403 DBREF 7ZTL B 28 89 UNP P04198 MYCN_HUMAN 28 89 SEQADV 7ZTL MET A 95 UNP O14965 INITIATING METHIONINE SEQADV 7ZTL LYS A 96 UNP O14965 EXPRESSION TAG SEQADV 7ZTL HIS A 97 UNP O14965 EXPRESSION TAG SEQADV 7ZTL HIS A 98 UNP O14965 EXPRESSION TAG SEQADV 7ZTL HIS A 99 UNP O14965 EXPRESSION TAG SEQADV 7ZTL HIS A 100 UNP O14965 EXPRESSION TAG SEQADV 7ZTL HIS A 101 UNP O14965 EXPRESSION TAG SEQADV 7ZTL HIS A 102 UNP O14965 EXPRESSION TAG SEQADV 7ZTL PRO A 103 UNP O14965 EXPRESSION TAG SEQADV 7ZTL MET A 104 UNP O14965 EXPRESSION TAG SEQADV 7ZTL SER A 105 UNP O14965 EXPRESSION TAG SEQADV 7ZTL ASP A 106 UNP O14965 EXPRESSION TAG SEQADV 7ZTL TYR A 107 UNP O14965 EXPRESSION TAG SEQADV 7ZTL ASP A 108 UNP O14965 EXPRESSION TAG SEQADV 7ZTL ILE A 109 UNP O14965 EXPRESSION TAG SEQADV 7ZTL PRO A 110 UNP O14965 EXPRESSION TAG SEQADV 7ZTL THR A 111 UNP O14965 EXPRESSION TAG SEQADV 7ZTL THR A 112 UNP O14965 EXPRESSION TAG SEQADV 7ZTL GLU A 113 UNP O14965 EXPRESSION TAG SEQADV 7ZTL ASN A 114 UNP O14965 EXPRESSION TAG SEQADV 7ZTL LEU A 115 UNP O14965 EXPRESSION TAG SEQADV 7ZTL TYR A 116 UNP O14965 EXPRESSION TAG SEQADV 7ZTL PHE A 117 UNP O14965 EXPRESSION TAG SEQADV 7ZTL GLN A 118 UNP O14965 EXPRESSION TAG SEQADV 7ZTL GLY A 119 UNP O14965 EXPRESSION TAG SEQADV 7ZTL ALA A 120 UNP O14965 EXPRESSION TAG SEQADV 7ZTL MET A 121 UNP O14965 EXPRESSION TAG SEQADV 7ZTL ALA A 290 UNP O14965 CYS 290 ENGINEERED MUTATION SEQADV 7ZTL CYS A 339 UNP O14965 LYS 339 ENGINEERED MUTATION SEQADV 7ZTL ALA A 393 UNP O14965 CYS 393 ENGINEERED MUTATION SEQADV 7ZTL LYS B 85 UNP P04198 ASN 85 ENGINEERED MUTATION SEQRES 1 A 309 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 309 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 309 MET GLU SER LYS LYS ARG GLN TRP ALA LEU GLU ASP PHE SEQRES 4 A 309 GLU ILE GLY ARG PRO LEU GLY LYS GLY LYS PHE GLY ASN SEQRES 5 A 309 VAL TYR LEU ALA ARG GLU LYS GLN SER LYS PHE ILE LEU SEQRES 6 A 309 ALA LEU LYS VAL LEU PHE LYS ALA GLN LEU GLU LYS ALA SEQRES 7 A 309 GLY VAL GLU HIS GLN LEU ARG ARG GLU VAL GLU ILE GLN SEQRES 8 A 309 SER HIS LEU ARG HIS PRO ASN ILE LEU ARG LEU TYR GLY SEQRES 9 A 309 TYR PHE HIS ASP ALA THR ARG VAL TYR LEU ILE LEU GLU SEQRES 10 A 309 TYR ALA PRO LEU GLY THR VAL TYR ARG GLU LEU GLN LYS SEQRES 11 A 309 LEU SER LYS PHE ASP GLU GLN ARG THR ALA THR TYR ILE SEQRES 12 A 309 THR GLU LEU ALA ASN ALA LEU SER TYR CYS HIS SER LYS SEQRES 13 A 309 ARG VAL ILE HIS ARG ASP ILE LYS PRO GLU ASN LEU LEU SEQRES 14 A 309 LEU GLY SER ALA GLY GLU LEU LYS ILE ALA ASP PHE GLY SEQRES 15 A 309 TRP SER VAL HIS ALA PRO SER SER ARG ARG THR TPO LEU SEQRES 16 A 309 ALA GLY THR LEU ASP TYR LEU PRO PRO GLU MET ILE GLU SEQRES 17 A 309 GLY ARG MET HIS ASP GLU LYS VAL ASP LEU TRP SER LEU SEQRES 18 A 309 GLY VAL LEU CYS TYR GLU PHE LEU VAL GLY LYS PRO PRO SEQRES 19 A 309 PHE GLU ALA ASN THR TYR GLN GLU THR TYR CYS ARG ILE SEQRES 20 A 309 SER ARG VAL GLU PHE THR PHE PRO ASP PHE VAL THR GLU SEQRES 21 A 309 GLY ALA ARG ASP LEU ILE SER ARG LEU LEU LYS HIS ASN SEQRES 22 A 309 PRO SER GLN ARG PRO MET LEU ARG GLU VAL LEU GLU HIS SEQRES 23 A 309 PRO TRP ILE THR ALA ASN SER SER LYS PRO SER ASN ALA SEQRES 24 A 309 GLN ASN LYS GLU SER ALA SER LYS GLN SER SEQRES 1 B 62 PHE TYR PRO ASP GLU ASP ASP PHE TYR PHE GLY GLY PRO SEQRES 2 B 62 ASP SER THR PRO PRO GLY GLU ASP ILE TRP LYS LYS PHE SEQRES 3 B 62 GLU LEU LEU PRO THR PRO PRO LEU SER PRO SER ARG GLY SEQRES 4 B 62 PHE ALA GLU HIS SER SER GLU PRO PRO SER TRP VAL THR SEQRES 5 B 62 GLU MET LEU LEU GLU LYS GLU LEU TRP GLY MODRES 7ZTL TPO A 288 THR MODIFIED RESIDUE HET TPO A 288 11 HET ADP A 501 27 HET MG A 502 1 HET MG A 503 1 HET GOL A 504 6 HET GOL A 505 6 HET BCN A 506 11 HET GOL A 507 6 HET NA A 508 1 HET JWG B 101 12 HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM BCN BICINE HETNAM NA SODIUM ION HETNAM JWG 4-(3-HYDROXY-3-OXOPROPYLAMINO)-4-OXIDANYLIDENE-BUTANOIC HETNAM 2 JWG ACID HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 8 BCN C6 H13 N O4 FORMUL 10 NA NA 1+ FORMUL 11 JWG C7 H11 N O5 FORMUL 12 HOH *208(H2 O) HELIX 1 AA1 ALA A 129 GLU A 131 5 3 HELIX 2 AA2 LYS A 166 GLY A 173 1 8 HELIX 3 AA3 VAL A 174 SER A 186 1 13 HELIX 4 AA4 THR A 217 SER A 226 1 10 HELIX 5 AA5 ASP A 229 LYS A 250 1 22 HELIX 6 AA6 LYS A 258 GLU A 260 5 3 HELIX 7 AA7 ASP A 274 SER A 278 5 5 HELIX 8 AA8 THR A 292 LEU A 296 5 5 HELIX 9 AA9 PRO A 297 GLU A 302 1 6 HELIX 10 AB1 GLU A 308 GLY A 325 1 18 HELIX 11 AB2 THR A 333 ARG A 343 1 11 HELIX 12 AB3 THR A 353 LEU A 364 1 12 HELIX 13 AB4 ASN A 367 ARG A 371 5 5 HELIX 14 AB5 MET A 373 HIS A 380 1 8 HELIX 15 AB6 HIS A 380 SER A 387 1 8 HELIX 16 AB7 PRO B 75 GLY B 89 1 15 SHEET 1 AA1 5 PHE A 133 LYS A 141 0 SHEET 2 AA1 5 ASN A 146 GLU A 152 -1 O VAL A 147 N LEU A 139 SHEET 3 AA1 5 ILE A 158 PHE A 165 -1 O LEU A 159 N ALA A 150 SHEET 4 AA1 5 ARG A 205 GLU A 211 -1 O LEU A 210 N ALA A 160 SHEET 5 AA1 5 LEU A 196 HIS A 201 -1 N PHE A 200 O TYR A 207 SHEET 1 AA2 2 VAL A 252 ILE A 253 0 SHEET 2 AA2 2 VAL A 279 HIS A 280 -1 O VAL A 279 N ILE A 253 SHEET 1 AA3 2 LEU A 262 LEU A 264 0 SHEET 2 AA3 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 LINK C THR A 287 N TPO A 288 1555 1555 1.33 LINK C TPO A 288 N LEU A 289 1555 1555 1.34 LINK SG CYS A 339 C5 JWG B 101 1555 1555 1.81 LINK NZ LYS B 85 C1 JWG B 101 1555 1555 1.32 LINK OD1 ASN A 261 MG MG A 503 1555 1555 2.13 LINK OD1 ASP A 274 MG MG A 502 1555 1555 2.12 LINK OD2 ASP A 274 MG MG A 502 1555 1555 2.55 LINK OD2 ASP A 274 MG MG A 503 1555 1555 2.08 LINK O1B ADP A 501 MG MG A 502 1555 1555 2.03 LINK O3B ADP A 501 MG MG A 503 1555 1555 2.02 LINK O2A ADP A 501 MG MG A 503 1555 1555 2.07 LINK MG MG A 502 O4 BCN A 506 1555 1555 2.15 LINK MG MG A 502 O6 BCN A 506 1555 1555 2.15 LINK MG MG A 502 O21 BCN A 506 1555 1555 2.15 LINK MG MG A 503 O HOH A 648 1555 1555 2.14 LINK MG MG A 503 O HOH A 680 1555 1555 2.11 LINK NA NA A 508 O HOH A 618 1555 1555 2.16 LINK NA NA A 508 O HOH A 623 1555 1555 2.21 LINK NA NA A 508 O HOH A 702 1555 1555 2.26 LINK NA NA A 508 O HOH A 779 1555 1555 2.19 LINK NA NA A 508 O HOH A 785 1555 1555 2.31 LINK NA NA A 508 O HOH A 786 1555 1555 2.25 CRYST1 86.614 86.614 91.789 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011545 0.006666 0.000000 0.00000 SCALE2 0.000000 0.013332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010895 0.00000