HEADER HYDROLASE 10-MAY-22 7ZTN TITLE CRYSTAL STRUCTURE OF FUNGAL CE16 ACETYL XYLAN ESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE ESTERASE FAMILY 16 PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTHELOMYCES THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 78579; SOURCE 4 STRAIN: ATCC 42464 / BCRC 31852 / DSM 1799; SOURCE 5 GENE: MYCTH_40885; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS ACETYL XYLAN ESTERASE, FUNGAL, HEMICELLULOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DIMAROGONA,C.KOSINAS,C.PENTARI,A.ZERVA,E.TOPAKAS REVDAT 3 17-JAN-24 7ZTN 1 JRNL REVDAT 2 27-DEC-23 7ZTN 1 JRNL REVDAT 1 23-AUG-23 7ZTN 0 JRNL AUTH C.PENTARI,A.ZERVA,C.KOSINAS,P.KARAMPA,V.PUCHART, JRNL AUTH 2 M.DIMAROGONA,E.TOPAKAS JRNL TITL THE ROLE OF CE16 EXO-DEACETYLASES IN HEMICELLULOLYTIC ENZYME JRNL TITL 2 MIXTURES REVEALED BY THE BIOCHEMICAL AND STRUCTURAL STUDY OF JRNL TITL 3 THE NOVEL TTCE16B ESTERASE. JRNL REF CARBOHYDR POLYM V. 327 21667 2024 JRNL REFN ESSN 1879-1344 JRNL PMID 38171682 JRNL DOI 10.1016/J.CARBPOL.2023.121667 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 135800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 4822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10291 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.0000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5085 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.354 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5528 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4917 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7557 ; 1.560 ; 1.680 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11355 ; 1.492 ; 1.607 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 677 ; 6.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;34.399 ;22.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 812 ;12.768 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 726 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6340 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1308 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2666 ; 1.505 ; 1.352 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2663 ; 1.488 ; 1.351 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3349 ; 1.830 ; 2.023 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3350 ; 1.836 ; 2.024 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2862 ; 1.790 ; 1.536 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2863 ; 1.790 ; 1.537 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4207 ; 2.188 ; 2.242 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6563 ; 2.530 ;18.028 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6400 ; 2.420 ;17.145 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10445 ; 2.322 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 502 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2923 -24.6277 -30.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.0964 REMARK 3 T33: 0.0328 T12: -0.0208 REMARK 3 T13: -0.0418 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.6471 L22: 0.8639 REMARK 3 L33: 0.7765 L12: 0.2822 REMARK 3 L13: 0.2135 L23: 0.0308 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0794 S13: -0.1014 REMARK 3 S21: -0.0914 S22: 0.0637 S23: 0.0802 REMARK 3 S31: 0.0586 S32: -0.1222 S33: -0.0610 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 611 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3515 -11.3656 1.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0492 REMARK 3 T33: 0.0067 T12: -0.0045 REMARK 3 T13: -0.0177 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.6063 L22: 1.2812 REMARK 3 L33: 1.1530 L12: 0.2509 REMARK 3 L13: -0.1166 L23: -0.3685 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: -0.0847 S13: -0.0200 REMARK 3 S21: 0.1926 S22: -0.0068 S23: -0.0028 REMARK 3 S31: -0.0364 S32: -0.0029 S33: -0.0422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7ZTN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 162.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM THIOCYANATE, BIS TRIS REMARK 280 PROPANE, PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.15400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.30800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.30800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.15400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1 REMARK 465 ILE B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ARG B 331 REMARK 465 LEU B 332 REMARK 465 GLU B 333 REMARK 465 GLN B 334 REMARK 465 LYS B 335 REMARK 465 LEU B 336 REMARK 465 ILE B 337 REMARK 465 SER B 338 REMARK 465 GLU B 339 REMARK 465 GLU B 340 REMARK 465 ASP B 341 REMARK 465 LEU B 342 REMARK 465 ASN B 343 REMARK 465 SER B 344 REMARK 465 ALA B 345 REMARK 465 VAL B 346 REMARK 465 ASP B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 465 HIS B 351 REMARK 465 HIS B 352 REMARK 465 HIS B 353 REMARK 465 SER A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 HIS A 8 REMARK 465 ARG A 331 REMARK 465 LEU A 332 REMARK 465 GLU A 333 REMARK 465 GLN A 334 REMARK 465 LYS A 335 REMARK 465 LEU A 336 REMARK 465 ILE A 337 REMARK 465 SER A 338 REMARK 465 GLU A 339 REMARK 465 GLU A 340 REMARK 465 ASP A 341 REMARK 465 LEU A 342 REMARK 465 ASN A 343 REMARK 465 SER A 344 REMARK 465 ALA A 345 REMARK 465 VAL A 346 REMARK 465 ASP A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 228 O HOH B 501 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 9 45.89 -86.52 REMARK 500 ASP B 18 -155.91 -128.98 REMARK 500 ASP B 100 -50.84 -130.45 REMARK 500 HIS B 117 62.42 -159.64 REMARK 500 ALA B 138 -130.47 -134.59 REMARK 500 LEU B 195 -136.64 -83.25 REMARK 500 TRP B 200 78.57 -164.39 REMARK 500 ALA B 260 58.74 -143.17 REMARK 500 SER B 273 -156.84 -116.16 REMARK 500 ASP A 18 -152.05 -124.62 REMARK 500 ASP A 100 -55.57 -131.16 REMARK 500 HIS A 117 65.23 -157.14 REMARK 500 ALA A 138 -129.27 -132.36 REMARK 500 LEU A 195 -139.32 -83.29 REMARK 500 TRP A 200 80.95 -165.47 REMARK 500 SER A 273 -157.54 -128.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 847 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 848 DISTANCE = 12.12 ANGSTROMS REMARK 525 HOH A 890 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 892 DISTANCE = 6.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 5 O REMARK 620 2 HIS B 8 O 73.7 REMARK 620 3 PHE B 10 O 146.1 79.7 REMARK 620 4 ALA B 64 O 73.4 109.8 96.8 REMARK 620 5 HOH B 767 O 112.0 76.2 80.8 173.2 REMARK 620 N 1 2 3 4 DBREF 7ZTN B 3 330 UNP G2QL32 G2QL32_MYCTT 16 343 DBREF 7ZTN A 3 330 UNP G2QL32 G2QL32_MYCTT 16 343 SEQADV 7ZTN SER B 1 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ILE B 2 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ARG B 331 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LEU B 332 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLU B 333 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLN B 334 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LYS B 335 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LEU B 336 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ILE B 337 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN SER B 338 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLU B 339 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLU B 340 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ASP B 341 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LEU B 342 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ASN B 343 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN SER B 344 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ALA B 345 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN VAL B 346 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ASP B 347 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS B 348 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS B 349 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS B 350 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS B 351 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS B 352 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS B 353 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN SER A 1 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ILE A 2 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ARG A 331 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LEU A 332 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLU A 333 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLN A 334 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LYS A 335 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LEU A 336 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ILE A 337 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN SER A 338 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLU A 339 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN GLU A 340 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ASP A 341 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN LEU A 342 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ASN A 343 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN SER A 344 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ALA A 345 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN VAL A 346 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN ASP A 347 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS A 348 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS A 349 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS A 350 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS A 351 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS A 352 UNP G2QL32 EXPRESSION TAG SEQADV 7ZTN HIS A 353 UNP G2QL32 EXPRESSION TAG SEQRES 1 B 353 SER ILE LYS SER HIS LYS ASP HIS ASN PHE GLU THR LEU SEQRES 2 B 353 VAL THR PHE GLY ASP SER TYR THR ASP ASN GLY ARG LEU SEQRES 3 B 353 GLY TYR TYR ILE ASN HIS GLY GLY LYS ALA PRO ARG PRO SEQRES 4 B 353 GLY THR MET HIS ASP GLU THR THR THR THR ALA SER GLY SEQRES 5 B 353 GLY LEU SER TRP ALA GLN PHE ALA ALA ARG ASP ALA GLY SEQRES 6 B 353 ALA THR LEU MET ASP TYR ALA VAL SER GLY ALA VAL CYS SEQRES 7 B 353 SER ASN GLN ILE VAL SER ARG TYR PHE ASP LEU ILE ASN SEQRES 8 B 353 ARG THR PHE PRO ALA ILE LEU ASP ASP GLU ILE PRO SER SEQRES 9 B 353 PHE GLN ALA ASP VAL LEU PHE LYS SER LEU TYR PRO HIS SEQRES 10 B 353 ARG THR ALA GLU ASN THR VAL TYR ALA VAL TRP ILE GLY SEQRES 11 B 353 THR ASN ASP LEU GLY TRP GLY ALA PHE LEU SER ASP SER SEQRES 12 B 353 GLN THR PRO GLY LYS THR ILE SER ASP PHE VAL SER CYS SEQRES 13 B 353 VAL PHE SER VAL LEU ASP HIS VAL TYR LYS THR GLY GLY SEQRES 14 B 353 ARG ARG PHE VAL ILE LEU ASN THR VAL PRO LEU GLU LEU SEQRES 15 B 353 ALA PRO LEU TYR ALA LEU PRO GLU ASN GLY GLY THR LEU SEQRES 16 B 353 ASP SER GLN TYR TRP ASN THR LYS THR LYS TYR ASN MET SEQRES 17 B 353 THR GLU TYR GLY GLN LYS ILE ARG GLU TYR SER THR SER SEQRES 18 B 353 VAL ASN THR MET LEU GLU ASN GLY ALA LEU VAL MET ALA SEQRES 19 B 353 SER LEU LYS LYS ARG TRP PRO LYS ALA MET VAL ASP VAL SEQRES 20 B 353 PHE ASP VAL HIS SER LEU PHE ASN ASP ILE TYR ASN ALA SEQRES 21 B 353 PRO THR LYS TYR LEU ASP ALA PRO HIS ASN VAL ASN SER SEQRES 22 B 353 TYR TYR HIS GLN CYS GLY PRO ALA GLY SER PRO CYS THR SEQRES 23 B 353 ASP GLN PRO GLY SER LEU ASN GLY TYR MET TRP TYR ASP SEQRES 24 B 353 GLU LEU HIS PRO SER ASN LYS THR SER SER ILE VAL ALA SEQRES 25 B 353 ARG ASN PHE LEU ASP VAL VAL ALA GLY LYS SER LYS TYR SEQRES 26 B 353 GLY THR ARG PHE HIS ARG LEU GLU GLN LYS LEU ILE SER SEQRES 27 B 353 GLU GLU ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS SEQRES 28 B 353 HIS HIS SEQRES 1 A 353 SER ILE LYS SER HIS LYS ASP HIS ASN PHE GLU THR LEU SEQRES 2 A 353 VAL THR PHE GLY ASP SER TYR THR ASP ASN GLY ARG LEU SEQRES 3 A 353 GLY TYR TYR ILE ASN HIS GLY GLY LYS ALA PRO ARG PRO SEQRES 4 A 353 GLY THR MET HIS ASP GLU THR THR THR THR ALA SER GLY SEQRES 5 A 353 GLY LEU SER TRP ALA GLN PHE ALA ALA ARG ASP ALA GLY SEQRES 6 A 353 ALA THR LEU MET ASP TYR ALA VAL SER GLY ALA VAL CYS SEQRES 7 A 353 SER ASN GLN ILE VAL SER ARG TYR PHE ASP LEU ILE ASN SEQRES 8 A 353 ARG THR PHE PRO ALA ILE LEU ASP ASP GLU ILE PRO SER SEQRES 9 A 353 PHE GLN ALA ASP VAL LEU PHE LYS SER LEU TYR PRO HIS SEQRES 10 A 353 ARG THR ALA GLU ASN THR VAL TYR ALA VAL TRP ILE GLY SEQRES 11 A 353 THR ASN ASP LEU GLY TRP GLY ALA PHE LEU SER ASP SER SEQRES 12 A 353 GLN THR PRO GLY LYS THR ILE SER ASP PHE VAL SER CYS SEQRES 13 A 353 VAL PHE SER VAL LEU ASP HIS VAL TYR LYS THR GLY GLY SEQRES 14 A 353 ARG ARG PHE VAL ILE LEU ASN THR VAL PRO LEU GLU LEU SEQRES 15 A 353 ALA PRO LEU TYR ALA LEU PRO GLU ASN GLY GLY THR LEU SEQRES 16 A 353 ASP SER GLN TYR TRP ASN THR LYS THR LYS TYR ASN MET SEQRES 17 A 353 THR GLU TYR GLY GLN LYS ILE ARG GLU TYR SER THR SER SEQRES 18 A 353 VAL ASN THR MET LEU GLU ASN GLY ALA LEU VAL MET ALA SEQRES 19 A 353 SER LEU LYS LYS ARG TRP PRO LYS ALA MET VAL ASP VAL SEQRES 20 A 353 PHE ASP VAL HIS SER LEU PHE ASN ASP ILE TYR ASN ALA SEQRES 21 A 353 PRO THR LYS TYR LEU ASP ALA PRO HIS ASN VAL ASN SER SEQRES 22 A 353 TYR TYR HIS GLN CYS GLY PRO ALA GLY SER PRO CYS THR SEQRES 23 A 353 ASP GLN PRO GLY SER LEU ASN GLY TYR MET TRP TYR ASP SEQRES 24 A 353 GLU LEU HIS PRO SER ASN LYS THR SER SER ILE VAL ALA SEQRES 25 A 353 ARG ASN PHE LEU ASP VAL VAL ALA GLY LYS SER LYS TYR SEQRES 26 A 353 GLY THR ARG PHE HIS ARG LEU GLU GLN LYS LEU ILE SER SEQRES 27 A 353 GLU GLU ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS SEQRES 28 A 353 HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG B 401 14 HET NAG B 402 14 HET ACT B 403 4 HET K B 404 1 HET NAG A 401 14 HET B3P A 402 19 HET NAG A 403 14 HET SCN A 404 3 HET SCN A 405 3 HET EDO A 406 4 HET EDO A 407 4 HET K A 408 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ACT ACETATE ION HETNAM K POTASSIUM ION HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM SCN THIOCYANATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 K 2(K 1+) FORMUL 10 B3P C11 H26 N2 O6 FORMUL 12 SCN 2(C N S 1-) FORMUL 14 EDO 2(C2 H6 O2) FORMUL 17 HOH *740(H2 O) HELIX 1 AA1 GLY B 24 HIS B 32 1 9 HELIX 2 AA2 SER B 55 GLY B 65 1 11 HELIX 3 AA3 ASP B 88 ASN B 91 5 4 HELIX 4 AA4 ASP B 100 VAL B 109 1 10 HELIX 5 AA5 ALA B 138 ASP B 142 5 5 HELIX 6 AA6 THR B 149 THR B 167 1 19 HELIX 7 AA7 PRO B 179 ALA B 183 5 5 HELIX 8 AA8 LEU B 188 GLY B 192 5 5 HELIX 9 AA9 THR B 202 TYR B 206 5 5 HELIX 10 AB1 ASN B 207 LEU B 236 1 30 HELIX 11 AB2 ASP B 249 ALA B 260 1 12 HELIX 12 AB3 PRO B 261 TYR B 264 5 4 HELIX 13 AB4 SER B 291 TYR B 295 5 5 HELIX 14 AB5 SER B 304 ALA B 320 1 17 HELIX 15 AB6 GLY A 24 HIS A 32 1 9 HELIX 16 AB7 SER A 55 GLY A 65 1 11 HELIX 17 AB8 ASP A 88 ASN A 91 5 4 HELIX 18 AB9 ASP A 100 VAL A 109 1 10 HELIX 19 AC1 ALA A 138 ASP A 142 5 5 HELIX 20 AC2 THR A 149 THR A 167 1 19 HELIX 21 AC3 PRO A 179 ALA A 183 5 5 HELIX 22 AC4 LEU A 188 GLY A 192 5 5 HELIX 23 AC5 THR A 202 TYR A 206 5 5 HELIX 24 AC6 ASN A 207 LEU A 236 1 30 HELIX 25 AC7 ASP A 249 ALA A 260 1 12 HELIX 26 AC8 ALA A 260 LEU A 265 1 6 HELIX 27 AC9 SER A 291 TYR A 295 5 5 HELIX 28 AD1 SER A 304 ALA A 320 1 17 SHEET 1 AA1 6 THR B 67 ASP B 70 0 SHEET 2 AA1 6 THR B 12 GLY B 17 1 N LEU B 13 O MET B 69 SHEET 3 AA1 6 THR B 123 TRP B 128 1 O VAL B 124 N VAL B 14 SHEET 4 AA1 6 ARG B 171 LEU B 175 1 O LEU B 175 N VAL B 127 SHEET 5 AA1 6 MET B 244 PHE B 248 1 O MET B 244 N PHE B 172 SHEET 6 AA1 6 GLY B 326 PHE B 329 -1 O PHE B 329 N VAL B 245 SHEET 1 AA2 2 TYR B 86 PHE B 87 0 SHEET 2 AA2 2 ARG B 92 THR B 93 -1 O ARG B 92 N PHE B 87 SHEET 1 AA3 2 HIS B 276 CYS B 278 0 SHEET 2 AA3 2 CYS B 285 ASP B 287 -1 O THR B 286 N GLN B 277 SHEET 1 AA4 6 THR A 67 ASP A 70 0 SHEET 2 AA4 6 THR A 12 GLY A 17 1 N LEU A 13 O MET A 69 SHEET 3 AA4 6 THR A 123 TRP A 128 1 O VAL A 124 N VAL A 14 SHEET 4 AA4 6 ARG A 171 LEU A 175 1 O LEU A 175 N VAL A 127 SHEET 5 AA4 6 MET A 244 PHE A 248 1 O PHE A 248 N ILE A 174 SHEET 6 AA4 6 GLY A 326 PHE A 329 -1 O PHE A 329 N VAL A 245 SHEET 1 AA5 2 TYR A 86 PHE A 87 0 SHEET 2 AA5 2 ARG A 92 THR A 93 -1 O ARG A 92 N PHE A 87 SHEET 1 AA6 2 HIS A 276 CYS A 278 0 SHEET 2 AA6 2 CYS A 285 ASP A 287 -1 O THR A 286 N GLN A 277 SSBOND 1 CYS B 78 CYS B 156 1555 1555 2.20 SSBOND 2 CYS B 278 CYS B 285 1555 1555 2.16 SSBOND 3 CYS A 78 CYS A 156 1555 1555 2.24 SSBOND 4 CYS A 278 CYS A 285 1555 1555 2.18 LINK ND2 ASN B 91 C1 NAG B 402 1555 1555 1.45 LINK ND2 ASN B 207 C1 NAG B 401 1555 1555 1.44 LINK ND2 ASN B 305 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 91 C1 NAG A 403 1555 1555 1.42 LINK ND2 ASN A 207 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 305 C1 NAG D 1 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.33 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.35 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.34 LINK O HIS B 5 K K B 404 1555 1555 2.83 LINK O HIS B 8 K K B 404 1555 1555 2.72 LINK O PHE B 10 K K B 404 1555 1555 2.74 LINK O ALA B 64 K K B 404 1555 1555 2.60 LINK K K B 404 O HOH B 767 1555 1555 2.72 LINK K K A 408 O HOH A 680 1555 1555 3.39 CISPEP 1 ALA B 267 PRO B 268 0 2.02 CISPEP 2 SER B 283 PRO B 284 0 -4.21 CISPEP 3 ALA A 267 PRO A 268 0 6.25 CISPEP 4 SER A 283 PRO A 284 0 -9.48 CISPEP 5 SER A 283 PRO A 284 0 -2.75 CISPEP 6 SER A 283 PRO A 284 0 -6.74 CRYST1 91.825 91.825 162.462 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010890 0.006288 0.000000 0.00000 SCALE2 0.000000 0.012575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006155 0.00000