HEADER TRANSPORT PROTEIN 11-MAY-22 7ZTR TITLE CRYSTAL STRUCTURE OF THE CAROTENOID-BINDING PROTEIN DOMAIN FROM TITLE 2 SILKWORM BOMBYX MORI (BMCBP) IN THE APOFORM, W232F MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAROTENOID-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: BMCBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAROTENOID-BINDING PROTEIN, CAROTENOID TRANSPORT, CBP, STARD, START KEYWDS 2 DOMAIN, BOMBYX MORI, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.N.SLUCHANKO,K.M.BOYKO,L.A.VARFOLOMEEVA,Y.B.SLONIMSKIY,N.A.EGORKIN, AUTHOR 2 E.G.MAKSIMOV,V.O.POPOV REVDAT 3 31-JAN-24 7ZTR 1 REMARK REVDAT 2 08-NOV-23 7ZTR 1 JRNL REVDAT 1 26-OCT-22 7ZTR 0 JRNL AUTH N.N.SLUCHANKO,Y.B.SLONIMSKIY,N.A.EGORKIN,L.A.VARFOLOMEEVA, JRNL AUTH 2 Y.V.FALETROV,A.M.MOYSENOVICH,E.Y.PARSHINA,T.FRIEDRICH, JRNL AUTH 3 E.G.MAKSIMOV,K.M.BOYKO,V.O.POPOV JRNL TITL SILKWORM CAROTENOPROTEIN AS AN EFFICIENT CAROTENOID JRNL TITL 2 EXTRACTOR, SOLUBILIZER AND TRANSPORTER. JRNL REF INT.J.BIOL.MACROMOL. V. 223 1381 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 36395947 JRNL DOI 10.1016/J.IJBIOMAC.2022.11.093 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0349 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 24006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1878 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1741 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2551 ; 2.092 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4051 ; 0.873 ; 1.548 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 7.540 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;22.511 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 308 ;15.334 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2145 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8676 12.7193 -17.1656 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: 0.0268 REMARK 3 T33: 0.0073 T12: -0.0064 REMARK 3 T13: 0.0023 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5620 L22: 1.6463 REMARK 3 L33: 1.2172 L12: -0.1375 REMARK 3 L13: 0.2028 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0321 S13: 0.0049 REMARK 3 S21: 0.0504 S22: -0.0250 S23: 0.0885 REMARK 3 S31: 0.0289 S32: -0.0189 S33: 0.0210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7ZTR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 60.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.84800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7ZTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 0.1 M BIS- TRIS PROPANE, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.25100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.25100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.01650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.38600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.01650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.38600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.25100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.01650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.38600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.25100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.01650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.38600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 445 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 45 REMARK 465 GLY A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 HIS A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 HIS A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 GLY A 57 REMARK 465 LEU A 58 REMARK 465 GLU A 59 REMARK 465 VAL A 60 REMARK 465 LEU A 61 REMARK 465 PHE A 62 REMARK 465 GLN A 63 REMARK 465 GLY A 64 REMARK 465 PRO A 65 REMARK 465 HIS A 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 140 CE NZ REMARK 470 LYS A 150 CE NZ REMARK 470 ARG A 195 NE CZ NH1 NH2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 263 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 135 NZ REMARK 480 LYS A 228 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 135 CE LYS A 135 NZ -0.477 REMARK 500 LYS A 228 CE LYS A 228 NZ -0.339 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 108 CB - CG - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG A 108 CG - CD - NE ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LYS A 135 CD - CE - NZ ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 CYS A 258 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 91 74.75 77.94 REMARK 500 ARG A 173 -21.28 174.36 REMARK 500 LEU A 260 107.45 -14.59 REMARK 500 PRO A 265 134.01 -35.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 259 LEU A 260 -146.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 108 0.31 SIDE CHAIN REMARK 500 ARG A 173 0.13 SIDE CHAIN REMARK 500 ARG A 192 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZTR A 68 297 UNP Q8MYA9 Q8MYA9_BOMMO 68 297 SEQADV 7ZTR MET A 45 UNP Q8MYA9 INITIATING METHIONINE SEQADV 7ZTR GLY A 46 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR SER A 47 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR SER A 48 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR HIS A 49 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR HIS A 50 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR HIS A 51 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR HIS A 52 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR HIS A 53 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR HIS A 54 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR SER A 55 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR SER A 56 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR GLY A 57 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR LEU A 58 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR GLU A 59 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR VAL A 60 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR LEU A 61 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR PHE A 62 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR GLN A 63 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR GLY A 64 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR PRO A 65 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR HIS A 66 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR MET A 67 UNP Q8MYA9 EXPRESSION TAG SEQADV 7ZTR PHE A 232 UNP Q8MYA9 TRP 232 ENGINEERED MUTATION SEQRES 1 A 253 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 253 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET SER ILE ASP SEQRES 3 A 253 GLU TYR LYS SER GLN ALA ASN GLU SER MET ALA ASN ALA SEQRES 4 A 253 TRP ARG ILE ILE THR LEU PRO ASN TRP THR VAL GLU LYS SEQRES 5 A 253 ARG GLY THR VAL ARG GLY ASP VAL VAL GLU SER ARG LYS SEQRES 6 A 253 VAL GLU GLY PHE GLY LYS VAL TYR ARG PHE THR GLY VAL SEQRES 7 A 253 VAL ASN CYS PRO ALA ARG PHE LEU TYR GLU GLU PHE LYS SEQRES 8 A 253 ASN ASN LEU THR LYS LEU PRO GLU TRP ASN PRO THR ILE SEQRES 9 A 253 LEU LYS CYS GLU ILE ILE LYS GLU ILE GLY ASP GLY VAL SEQRES 10 A 253 ASP LEU SER TYR GLN VAL THR ALA GLY GLY GLY ARG GLY SEQRES 11 A 253 ILE ILE THR PRO ARG ASP PHE VAL ILE LEU ARG ARG THR SEQRES 12 A 253 ALA LEU LEU SER ARG GLU GLY ARG VAL VAL ASP ASP ASN SEQRES 13 A 253 PRO HIS GLY TYR ILE SER SER GLY VAL SER VAL GLN VAL SEQRES 14 A 253 PRO GLY TYR PRO PRO LEU LYS GLU MET VAL ARG GLY HIS SEQRES 15 A 253 ASN LYS VAL GLY CYS PHE TYR LEU GLN PRO ARG THR VAL SEQRES 16 A 253 GLN THR PRO GLY GLY LYS ILE GLU ASP GLN ALA LEU PHE SEQRES 17 A 253 GLN TRP LEU MET CYS CYS ASP LEU LYS GLY LYS ILE PRO SEQRES 18 A 253 GLN PHE VAL LEU ASP VAL ALA PHE ALA THR VAL MET LEU SEQRES 19 A 253 ASP TYR ILE VAL HIS VAL ARG LYS PHE VAL ALA GLU ALA SEQRES 20 A 253 LYS ALA ARG ALA GLU ILE FORMUL 2 HOH *179(H2 O) HELIX 1 AA1 SER A 68 THR A 88 1 21 HELIX 2 AA2 PRO A 126 ASN A 137 1 12 HELIX 3 AA3 LYS A 140 ASN A 145 1 6 HELIX 4 AA4 PRO A 265 ARG A 294 1 30 SHEET 1 AA1 8 THR A 93 ARG A 97 0 SHEET 2 AA1 8 VAL A 104 VAL A 110 -1 O VAL A 105 N GLU A 95 SHEET 3 AA1 8 GLY A 114 VAL A 123 -1 O ARG A 118 N GLU A 106 SHEET 4 AA1 8 ILE A 246 MET A 256 -1 O PHE A 252 N GLY A 121 SHEET 5 AA1 8 GLY A 230 GLN A 240 -1 N ARG A 237 O GLN A 249 SHEET 6 AA1 8 GLY A 203 SER A 210 -1 N TYR A 204 O LEU A 234 SHEET 7 AA1 8 ARG A 179 LEU A 190 -1 N LEU A 184 O VAL A 209 SHEET 8 AA1 8 VAL A 196 VAL A 197 -1 O VAL A 197 N LEU A 189 SHEET 1 AA2 4 ILE A 148 GLY A 158 0 SHEET 2 AA2 4 VAL A 161 THR A 168 -1 O LEU A 163 N ILE A 154 SHEET 3 AA2 4 ARG A 179 LEU A 190 -1 O ARG A 179 N THR A 168 SHEET 4 AA2 4 VAL A 223 ARG A 224 1 O VAL A 223 N ASP A 180 CRYST1 62.033 66.772 120.502 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008299 0.00000