HEADER VIRAL PROTEIN 12-MAY-22 7ZUM TITLE CRYSTAL STRUCTURE OF UNLINKED NS2B-NS3 PROTEASE FROM ZIKA VIRUS IN TITLE 2 COMPLEX WITH INHIBITOR MI-2130 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT,NON-STRUCTURAL COMPND 5 PROTEIN 2B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SERINE PROTEASE NS3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT,NON-STRUCTURAL COMPND 11 PROTEIN 3; COMPND 12 EC: 3.4.21.91,3.6.1.15,3.6.4.13; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: BZIPRO; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 9 ORGANISM_TAXID: 64320; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BZIPRO KEYWDS FLAVIVIRIN, SERINE PROTEASE, VIRAL PROTEIN, NS2B-NS3, ZIKA VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.HUBER,T.STEINMETZER REVDAT 3 12-JUN-24 7ZUM 1 JRNL REVDAT 2 07-FEB-24 7ZUM 1 REMARK REVDAT 1 22-MAR-23 7ZUM 0 JRNL AUTH S.HUBER,N.J.BRAUN,L.C.SCHMACKE,R.MURRA,D.BENDER,E.HILDT, JRNL AUTH 2 A.HEINE,T.STEINMETZER JRNL TITL SYNTHESIS AND STRUCTURAL CHARACTERIZATION OF NEW MACROCYCLIC JRNL TITL 2 INHIBITORS OF THE ZIKA VIRUS NS2B-NS3 PROTEASE. JRNL REF ARCH PHARM 00250 2024 JRNL REFN ESSN 1521-4184 JRNL PMID 38809037 JRNL DOI 10.1002/ARDP.202400250 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6100 - 3.6300 1.00 2808 148 0.1506 0.1385 REMARK 3 2 3.6300 - 2.8900 1.00 2674 140 0.1857 0.2253 REMARK 3 3 2.8900 - 2.5200 1.00 2670 140 0.2096 0.2546 REMARK 3 4 2.5200 - 2.2900 1.00 2661 140 0.2093 0.2732 REMARK 3 5 2.2900 - 2.1300 1.00 2639 139 0.1996 0.2355 REMARK 3 6 2.1300 - 2.0000 1.00 2620 138 0.1995 0.2375 REMARK 3 7 2.0000 - 1.9000 1.00 2585 137 0.2081 0.2365 REMARK 3 8 1.9000 - 1.8200 1.00 2623 138 0.2262 0.3292 REMARK 3 9 1.8200 - 1.7500 0.98 2566 136 0.2506 0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.204 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1492 REMARK 3 ANGLE : 1.001 2033 REMARK 3 CHIRALITY : 0.064 227 REMARK 3 PLANARITY : 0.007 283 REMARK 3 DIHEDRAL : 14.834 881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2185 -32.1355 2.7508 REMARK 3 T TENSOR REMARK 3 T11: 0.6112 T22: 0.3467 REMARK 3 T33: 0.5413 T12: -0.0420 REMARK 3 T13: 0.0926 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 9.4634 L22: 2.7660 REMARK 3 L33: 2.7363 L12: -3.2034 REMARK 3 L13: 1.6810 L23: -2.5577 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: 0.7901 S13: -1.1397 REMARK 3 S21: -1.1479 S22: 0.2573 S23: -1.1283 REMARK 3 S31: 1.1397 S32: -0.1037 S33: -0.1300 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0326 -30.0109 16.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.3914 REMARK 3 T33: 0.4311 T12: 0.0439 REMARK 3 T13: 0.0628 T23: 0.1748 REMARK 3 L TENSOR REMARK 3 L11: 6.3847 L22: 7.0567 REMARK 3 L33: 5.3736 L12: 6.7081 REMARK 3 L13: 5.3462 L23: 5.7132 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: -0.3770 S13: -0.7252 REMARK 3 S21: 0.8928 S22: 0.4931 S23: 0.3973 REMARK 3 S31: 1.2537 S32: 0.0039 S33: -0.2278 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5784 -19.3167 26.0828 REMARK 3 T TENSOR REMARK 3 T11: 0.6107 T22: 0.6011 REMARK 3 T33: 0.2549 T12: -0.0660 REMARK 3 T13: 0.0088 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 2.0018 L22: 9.7994 REMARK 3 L33: 4.7534 L12: 6.9037 REMARK 3 L13: 4.1695 L23: 6.7758 REMARK 3 S TENSOR REMARK 3 S11: 0.8351 S12: -1.3489 S13: -0.7370 REMARK 3 S21: 0.7944 S22: -0.7153 S23: -0.8181 REMARK 3 S31: -0.0494 S32: 0.1796 S33: -0.1316 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6978 -12.4270 24.3532 REMARK 3 T TENSOR REMARK 3 T11: 0.3582 T22: 0.7501 REMARK 3 T33: 1.0176 T12: -0.1706 REMARK 3 T13: -0.2414 T23: 0.5111 REMARK 3 L TENSOR REMARK 3 L11: 0.4778 L22: 4.3528 REMARK 3 L33: 3.2081 L12: -1.4432 REMARK 3 L13: 1.2390 L23: -3.7377 REMARK 3 S TENSOR REMARK 3 S11: 0.4024 S12: -1.3524 S13: -2.0417 REMARK 3 S21: 0.4753 S22: -0.7962 S23: -0.4915 REMARK 3 S31: 0.3317 S32: 0.6537 S33: 0.5032 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8917 -1.5120 5.3274 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.3189 REMARK 3 T33: 0.6716 T12: 0.0067 REMARK 3 T13: 0.0093 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 6.4122 L22: 5.4236 REMARK 3 L33: 7.2264 L12: 1.5248 REMARK 3 L13: 3.2687 L23: -0.8620 REMARK 3 S TENSOR REMARK 3 S11: -0.1556 S12: 0.2680 S13: 1.0038 REMARK 3 S21: -0.2227 S22: 0.3970 S23: 1.0610 REMARK 3 S31: -0.6085 S32: -0.0243 S33: -0.2662 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1443 -29.5003 11.5294 REMARK 3 T TENSOR REMARK 3 T11: 0.2586 T22: 0.2506 REMARK 3 T33: 0.3381 T12: -0.0139 REMARK 3 T13: 0.0301 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 8.8691 L22: 9.3381 REMARK 3 L33: 2.5360 L12: 0.2632 REMARK 3 L13: -2.8964 L23: 0.5330 REMARK 3 S TENSOR REMARK 3 S11: -0.2266 S12: -0.3037 S13: -0.8667 REMARK 3 S21: 0.3085 S22: -0.1307 S23: 0.3057 REMARK 3 S31: 0.5183 S32: -0.0947 S33: 0.4076 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3946 -24.4159 7.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2111 REMARK 3 T33: 0.2911 T12: 0.0075 REMARK 3 T13: 0.0009 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.9273 L22: 8.6562 REMARK 3 L33: 6.9232 L12: -1.0905 REMARK 3 L13: 0.6420 L23: 1.7793 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: -0.0571 S13: -0.4950 REMARK 3 S21: -0.2089 S22: -0.1073 S23: 0.0699 REMARK 3 S31: 0.1305 S32: 0.0683 S33: 0.3234 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0724 -27.3006 4.6169 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.2795 REMARK 3 T33: 0.5222 T12: -0.0591 REMARK 3 T13: -0.0662 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 7.9018 L22: 2.0226 REMARK 3 L33: 7.1920 L12: -1.1698 REMARK 3 L13: 1.1832 L23: -3.5976 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: -0.0062 S13: -0.4275 REMARK 3 S21: -0.6166 S22: -0.0582 S23: 0.5626 REMARK 3 S31: 0.6176 S32: -0.2074 S33: 0.0162 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6829 -16.0009 5.1070 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.2909 REMARK 3 T33: 0.5965 T12: 0.0311 REMARK 3 T13: -0.0754 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.2709 L22: 3.2294 REMARK 3 L33: 6.5774 L12: -0.3583 REMARK 3 L13: 0.1104 L23: -4.5583 REMARK 3 S TENSOR REMARK 3 S11: -0.2681 S12: 0.0512 S13: 0.9276 REMARK 3 S21: -0.3815 S22: 0.4214 S23: 1.6613 REMARK 3 S31: -0.0994 S32: -0.0946 S33: -0.2746 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6497 -15.8732 17.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.3610 REMARK 3 T33: 0.2623 T12: -0.0243 REMARK 3 T13: 0.0823 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.0339 L22: 5.7654 REMARK 3 L33: 2.8868 L12: 0.8751 REMARK 3 L13: 0.4123 L23: 1.5947 REMARK 3 S TENSOR REMARK 3 S11: 0.2158 S12: -0.9033 S13: 0.4029 REMARK 3 S21: 0.6140 S22: -0.1842 S23: 0.3795 REMARK 3 S31: -0.1645 S32: -0.1653 S33: 0.0064 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4101 -6.9668 17.1025 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.3492 REMARK 3 T33: 0.3201 T12: -0.0076 REMARK 3 T13: 0.0895 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 3.5485 L22: 6.5359 REMARK 3 L33: 5.9014 L12: 1.5113 REMARK 3 L13: -0.2517 L23: -0.2863 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.5707 S13: 0.7863 REMARK 3 S21: 0.9422 S22: -0.0008 S23: 0.2902 REMARK 3 S31: -0.4628 S32: -0.1339 S33: -0.1809 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2892 -10.6049 12.4107 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2690 REMARK 3 T33: 0.2825 T12: 0.0245 REMARK 3 T13: 0.0355 T23: -0.0561 REMARK 3 L TENSOR REMARK 3 L11: 3.0450 L22: 3.3277 REMARK 3 L33: 3.4032 L12: 1.0376 REMARK 3 L13: -1.0325 L23: -0.3112 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: -0.2841 S13: 0.4599 REMARK 3 S21: 0.3423 S22: -0.0571 S23: 0.4714 REMARK 3 S31: -0.0461 S32: -0.0667 S33: 0.0047 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.82656 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.950 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 30.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.42 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46100 REMARK 200 FOR SHELL : 3.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,1 M SODIUM ACETATE PH4.6 1,4 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.67150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.44450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.31150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.44450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.67150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.31150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 49 CG1 CG2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 ARG A 73 CZ NH1 NH2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 LEU B 31 CG CD1 CD2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 105 CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CD CE NZ REMARK 470 LYS B 117 CE NZ REMARK 470 LYS B 119 CE NZ REMARK 470 LYS B 142 CD CE NZ REMARK 470 LYS B 157 CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 29 -123.27 -109.38 REMARK 500 LEU B 31 -128.92 -118.65 REMARK 500 ASP B 71 111.24 -162.07 REMARK 500 CYS B 80 -17.34 82.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 393 DISTANCE = 5.86 ANGSTROMS DBREF 7ZUM A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF 7ZUM B 1 177 UNP Q32ZE1 POLG_ZIKV 1499 1675 SEQADV 7ZUM MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 7ZUM THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZUM GLY B 0 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZUM LYS B 107 UNP Q32ZE1 ARG 1605 CONFLICT SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET JN9 B 201 57 HETNAM JN9 1-[(5R,8R,15S,18S)-15-(4-AZANYLBUTYL)-5- HETNAM 2 JN9 (CYCLOHEXYLMETHYL)-18-(1H-INDOL-3-YLMETHYL)-4,7,14,17, HETNAM 3 JN9 20-PENTAKIS(OXIDANYLIDENE)-3,6,13,16,19- HETNAM 4 JN9 PENTAZABICYCLO[20.3.1]HEXACOSA-1(25),22(26),23-TRIEN- HETNAM 5 JN9 8-YL]GUANIDINE HETSYN JN9 (2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3- HETSYN 2 JN9 DIHYDROXYCYCLOHEXYLOXY)-5-AMINO-2-(AMINOMETHYL)- HETSYN 3 JN9 TETRAHYDRO-2H-PYRA N-3,4-DIOL; NEOMYCIN A; NEAMINE; HETSYN 4 JN9 (1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYL HETSYN 5 JN9 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOSIDE; (1R,2R,3S, HETSYN 6 JN9 4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYL 2,6- HETSYN 7 JN9 DIAMINO-2,6-DIDEOXY-D-GLUCOSIDE; (1R,2R,3S,4R,6S)-4,6- HETSYN 8 JN9 DIAMINO-2,3-DIHYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6- HETSYN 9 JN9 DIDEOXY-GLUCOSIDE FORMUL 3 JN9 C42 H60 N10 O5 FORMUL 4 HOH *117(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 ASP A 50 GLY A 57 1 N MET A 51 O ARG B 59 SHEET 4 AA1 8 GLY B 21 ARG B 28 -1 O MET B 26 N TYR A 52 SHEET 5 AA1 8 SER B 33 GLN B 42 -1 O MET B 41 N GLY B 21 SHEET 6 AA1 8 VAL B 45 MET B 49 -1 O VAL B 45 N GLN B 42 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TRP B 69 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N LEU B 97 O ILE B 109 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 CRYST1 49.343 60.623 80.889 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020266 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012363 0.00000