HEADER OXIDOREDUCTASE 15-MAY-22 7ZVD TITLE K89 ACETYLATED GLUCOSE-6-PHOSPHATE DEHYDROGENASE (G6PD) IN A COMPLEX TITLE 2 WITH STRUCTURAL NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: N; COMPND 4 SYNONYM: G6PD; COMPND 5 EC: 1.1.1.49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: G6PD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYSINE ACETYLATION, METABOLIC REGULATION, POST-TRANSLATIONAL KEYWDS 2 MODIFICATION, GENETIC CODE EXPANSION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WU,N.H.MUSKAT,H.NUDELMAN,A.SHAHAR,E.ARBELY REVDAT 4 28-FEB-24 7ZVD 1 SOURCE REVDAT 3 07-FEB-24 7ZVD 1 JRNL REVDAT 2 15-NOV-23 7ZVD 1 REMARK REVDAT 1 23-AUG-23 7ZVD 0 JRNL AUTH F.WU,N.H.MUSKAT,I.DVILANSKY,O.KOREN,A.SHAHAR,R.GAZIT,N.ELIA, JRNL AUTH 2 E.ARBELY JRNL TITL ACETYLATION-DEPENDENT COUPLING BETWEEN G6PD ACTIVITY AND JRNL TITL 2 APOPTOTIC SIGNALING. JRNL REF NAT COMMUN V. 14 6208 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37798264 JRNL DOI 10.1038/S41467-023-41895-2 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0350 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1451 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.59000 REMARK 3 B22 (A**2) : 2.52000 REMARK 3 B33 (A**2) : -5.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.550 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.327 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.310 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4078 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3661 ; 0.008 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5525 ; 2.030 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8539 ; 0.777 ; 1.554 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 9.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 33 ;17.769 ; 9.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;18.515 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4644 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 845 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1935 ; 5.860 ; 5.198 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1935 ; 5.839 ; 5.199 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2417 ; 7.808 ; 7.795 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2418 ; 7.809 ; 7.798 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2143 ; 6.890 ; 5.836 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2141 ; 6.886 ; 5.834 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3109 ; 9.640 ; 8.525 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4420 ;11.389 ;62.471 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4421 ;11.388 ;62.469 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 28 N 601 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1087 -21.5859 29.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.0122 REMARK 3 T33: 0.1005 T12: 0.0252 REMARK 3 T13: -0.0026 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6677 L22: 0.5189 REMARK 3 L33: 0.7653 L12: 0.1621 REMARK 3 L13: -0.3903 L23: -0.5332 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: 0.0166 S13: 0.1694 REMARK 3 S21: 0.1716 S22: 0.0603 S23: 0.1075 REMARK 3 S31: -0.2144 S32: -0.0841 S33: -0.0883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7ZVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 54.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.03291 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6E08 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.2, 0.2M L-PROLINE, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.11000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.24000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.11000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.24000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.11000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.24000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.11000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.24000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.24000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 108.24000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.24000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.24000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.11000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.11000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 86.11000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 30.11000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 86.11000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -30.11000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.24000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU N 98 N ASP N 100 1.80 REMARK 500 O GLU N 99 N ALA N 103 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR N 147 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG N 198 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP N 286 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 THR N 333 CA - CB - OG1 ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG N 348 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG N 348 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG N 454 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG N 454 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN N 64 66.36 -101.94 REMARK 500 ALA N 90 108.24 -49.93 REMARK 500 GLU N 94 25.65 -145.26 REMARK 500 LEU N 98 151.37 -39.14 REMARK 500 GLU N 99 -17.28 -41.51 REMARK 500 LEU N 130 37.93 38.88 REMARK 500 THR N 145 -6.23 -58.39 REMARK 500 LYS N 171 153.45 -47.26 REMARK 500 ASP N 194 -25.34 -23.79 REMARK 500 ASN N 262 -83.03 -103.34 REMARK 500 MET N 273 127.27 -13.05 REMARK 500 ASP N 313 57.04 -99.53 REMARK 500 GLU N 317 -38.11 -35.55 REMARK 500 MET N 411 30.11 -87.43 REMARK 500 TYR N 428 60.10 -106.97 REMARK 500 GLU N 504 -70.75 -109.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU N 94 LYS N 95 148.51 REMARK 500 LEU N 98 GLU N 99 -136.90 REMARK 500 LYS N 403 MET N 404 -143.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG N 57 0.18 SIDE CHAIN REMARK 500 ARG N 72 0.09 SIDE CHAIN REMARK 500 ARG N 81 0.11 SIDE CHAIN REMARK 500 ARG N 136 0.09 SIDE CHAIN REMARK 500 ARG N 182 0.16 SIDE CHAIN REMARK 500 ARG N 198 0.10 SIDE CHAIN REMARK 500 ARG N 219 0.10 SIDE CHAIN REMARK 500 ARG N 246 0.12 SIDE CHAIN REMARK 500 ARG N 285 0.08 SIDE CHAIN REMARK 500 ARG N 330 0.10 SIDE CHAIN REMARK 500 ARG N 348 0.10 SIDE CHAIN REMARK 500 ARG N 387 0.15 SIDE CHAIN REMARK 500 ARG N 393 0.10 SIDE CHAIN REMARK 500 ARG N 427 0.12 SIDE CHAIN REMARK 500 ARG N 454 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZVD N 28 511 UNP P11413 G6PD_HUMAN 28 511 SEQRES 1 N 484 GLN SER ASP THR HIS ILE PHE ILE ILE MET GLY ALA SER SEQRES 2 N 484 GLY ASP LEU ALA LYS LYS LYS ILE TYR PRO THR ILE TRP SEQRES 3 N 484 TRP LEU PHE ARG ASP GLY LEU LEU PRO GLU ASN THR PHE SEQRES 4 N 484 ILE VAL GLY TYR ALA ARG SER ARG LEU THR VAL ALA ASP SEQRES 5 N 484 ILE ARG LYS GLN SER GLU PRO PHE PHE ALY ALA THR PRO SEQRES 6 N 484 GLU GLU LYS LEU LYS LEU GLU ASP PHE PHE ALA ARG ASN SEQRES 7 N 484 SER TYR VAL ALA GLY GLN TYR ASP ASP ALA ALA SER TYR SEQRES 8 N 484 GLN ARG LEU ASN SER HIS MET ASN ALA LEU HIS LEU GLY SEQRES 9 N 484 SER GLN ALA ASN ARG LEU PHE TYR LEU ALA LEU PRO PRO SEQRES 10 N 484 THR VAL TYR GLU ALA VAL THR LYS ASN ILE HIS GLU SER SEQRES 11 N 484 CYS MET SER GLN ILE GLY TRP ASN ARG ILE ILE VAL GLU SEQRES 12 N 484 LYS PRO PHE GLY ARG ASP LEU GLN SER SER ASP ARG LEU SEQRES 13 N 484 SER ASN HIS ILE SER SER LEU PHE ARG GLU ASP GLN ILE SEQRES 14 N 484 TYR ARG ILE ASP HIS TYR LEU GLY LYS GLU MET VAL GLN SEQRES 15 N 484 ASN LEU MET VAL LEU ARG PHE ALA ASN ARG ILE PHE GLY SEQRES 16 N 484 PRO ILE TRP ASN ARG ASP ASN ILE ALA CYS VAL ILE LEU SEQRES 17 N 484 THR PHE LYS GLU PRO PHE GLY THR GLU GLY ARG GLY GLY SEQRES 18 N 484 TYR PHE ASP GLU PHE GLY ILE ILE ARG ASP VAL MET GLN SEQRES 19 N 484 ASN HIS LEU LEU GLN MET LEU CYS LEU VAL ALA MET GLU SEQRES 20 N 484 LYS PRO ALA SER THR ASN SER ASP ASP VAL ARG ASP GLU SEQRES 21 N 484 LYS VAL LYS VAL LEU LYS CYS ILE SER GLU VAL GLN ALA SEQRES 22 N 484 ASN ASN VAL VAL LEU GLY GLN TYR VAL GLY ASN PRO ASP SEQRES 23 N 484 GLY GLU GLY GLU ALA THR LYS GLY TYR LEU ASP ASP PRO SEQRES 24 N 484 THR VAL PRO ARG GLY SER THR THR ALA THR PHE ALA ALA SEQRES 25 N 484 VAL VAL LEU TYR VAL GLU ASN GLU ARG TRP ASP GLY VAL SEQRES 26 N 484 PRO PHE ILE LEU ARG CYS GLY LYS ALA LEU ASN GLU ARG SEQRES 27 N 484 LYS ALA GLU VAL ARG LEU GLN PHE HIS ASP VAL ALA GLY SEQRES 28 N 484 ASP ILE PHE HIS GLN GLN CYS LYS ARG ASN GLU LEU VAL SEQRES 29 N 484 ILE ARG VAL GLN PRO ASN GLU ALA VAL TYR THR LYS MET SEQRES 30 N 484 MET THR LYS LYS PRO GLY MET PHE PHE ASN PRO GLU GLU SEQRES 31 N 484 SER GLU LEU ASP LEU THR TYR GLY ASN ARG TYR LYS ASN SEQRES 32 N 484 VAL LYS LEU PRO ASP ALA TYR GLU ARG LEU ILE LEU ASP SEQRES 33 N 484 VAL PHE CYS GLY SER GLN MET HIS PHE VAL ARG SER ASP SEQRES 34 N 484 GLU LEU ARG GLU ALA TRP ARG ILE PHE THR PRO LEU LEU SEQRES 35 N 484 HIS GLN ILE GLU LEU GLU LYS PRO LYS PRO ILE PRO TYR SEQRES 36 N 484 ILE TYR GLY SER ARG GLY PRO THR GLU ALA ASP GLU LEU SEQRES 37 N 484 MET LYS ARG VAL GLY PHE GLN TYR GLU GLY THR TYR LYS SEQRES 38 N 484 TRP VAL ASN MODRES 7ZVD ALY N 89 LYS MODIFIED RESIDUE HET ALY N 89 12 HET NAP N 601 48 HETNAM ALY N(6)-ACETYLLYSINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 1 ALY C8 H16 N2 O3 FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *46(H2 O) HELIX 1 AA1 GLY N 41 LYS N 47 1 7 HELIX 2 AA2 LYS N 47 ASP N 58 1 12 HELIX 3 AA3 THR N 76 GLU N 85 1 10 HELIX 4 AA4 GLU N 99 ARG N 104 1 6 HELIX 5 AA5 ASP N 114 ALA N 127 1 14 HELIX 6 AA6 PRO N 143 THR N 145 5 3 HELIX 7 AA7 VAL N 146 CYS N 158 1 13 HELIX 8 AA8 ASP N 176 PHE N 191 1 16 HELIX 9 AA9 ARG N 192 ASP N 194 5 3 HELIX 10 AB1 HIS N 201 GLY N 204 5 4 HELIX 11 AB2 LYS N 205 ALA N 217 1 13 HELIX 12 AB3 ARG N 246 ASP N 251 1 6 HELIX 13 AB4 PHE N 253 VAL N 259 1 7 HELIX 14 AB5 ASN N 262 MET N 273 1 12 HELIX 15 AB6 ASN N 280 CYS N 294 1 15 HELIX 16 AB7 GLN N 299 ASN N 301 5 3 HELIX 17 AB8 GLU N 315 LYS N 320 5 6 HELIX 18 AB9 GLY N 321 ASP N 325 5 5 HELIX 19 AC1 TYR N 424 TYR N 428 1 5 HELIX 20 AC2 ASP N 435 GLY N 447 1 13 HELIX 21 AC3 ARG N 454 LYS N 476 1 23 HELIX 22 AC4 PRO N 489 VAL N 499 1 11 SHEET 1 AA1 7 ASN N 105 ALA N 109 0 SHEET 2 AA1 7 THR N 65 ALA N 71 1 N GLY N 69 O SER N 106 SHEET 3 AA1 7 HIS N 32 MET N 37 1 N HIS N 32 O PHE N 66 SHEET 4 AA1 7 ASN N 135 LEU N 140 1 O TYR N 139 N ILE N 35 SHEET 5 AA1 7 ASN N 165 GLU N 170 1 O ARG N 166 N ARG N 136 SHEET 6 AA1 7 ILE N 196 ILE N 199 1 O TYR N 197 N ILE N 167 SHEET 7 AA1 7 PHE N 452 VAL N 453 -1 O VAL N 453 N ARG N 198 SHEET 1 AA2 9 PRO N 415 THR N 423 0 SHEET 2 AA2 9 ALA N 399 LYS N 407 -1 N VAL N 400 O LEU N 422 SHEET 3 AA2 9 GLU N 389 GLN N 395 -1 N VAL N 391 O TYR N 401 SHEET 4 AA2 9 LYS N 366 PHE N 373 -1 N VAL N 369 O ILE N 392 SHEET 5 AA2 9 ILE N 230 LYS N 238 -1 N LYS N 238 O LYS N 366 SHEET 6 AA2 9 PHE N 354 GLY N 359 1 O ILE N 355 N LEU N 235 SHEET 7 AA2 9 PHE N 337 LEU N 342 -1 N VAL N 340 O LEU N 356 SHEET 8 AA2 9 VAL N 303 VAL N 309 -1 N GLY N 306 O PHE N 337 SHEET 9 AA2 9 ILE N 480 ILE N 483 1 O ILE N 480 N LEU N 305 LINK C PHE N 88 N ALY N 89 1555 1555 1.34 LINK C ALY N 89 N ALA N 90 1555 1555 1.32 CISPEP 1 LYS N 171 PRO N 172 0 -0.02 CISPEP 2 GLN N 395 PRO N 396 0 -19.27 CRYST1 60.220 172.220 216.480 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004619 0.00000