HEADER LIPID BINDING PROTEIN 17-MAY-22 7ZVX TITLE CRYSTAL STRUCTURE OF HUMAN ANNEXIN A2 IN COMPLEX WITH FULL TITLE 2 PHOSPHOROTHIOATE 5-10 2'-METHOXYETHYL DNA GAPMER ANTISENSE TITLE 3 OLIGONUCLEOTIDE SOLVED AT 2.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANNEXIN A2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANNEXIN II,ANNEXIN-2,CALPACTIN I HEAVY CHAIN,CALPACTIN-1 COMPND 5 HEAVY CHAIN,CHROMOBINDIN-8,LIPOCORTIN II,PLACENTAL ANTICOAGULANT COMPND 6 PROTEIN IV,PAP-IV,PROTEIN I,P36; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE FIRST RESIDUE IS DERIVED FROM THE EXPRESSION COMPND 9 VECTOR; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 2'-METHOXYETHYL DNA GAPMER ANTISENSE OLIGONUCLEOTIDE; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: (K39)(N7X)(N7X)(K2F)(K39)(GS)(OKN)(PST)(GS)(GS)(PST) COMPND 15 (PST)(AS)(PST)(GS),(K39)(N7X)(N7X)(K2F)(K39)(GS)(OKN)(PST)(GS)(GS) COMPND 16 (PST)(PST)(AS)(PST)(GS),(K39)(N7X)(N7X)(K2F)(K39)(GS)(OKN)(PST)(GS) COMPND 17 (GS)(PST)(PST)(AS)(PST)(GS),(K39)(N7X)(N7X)(K2F)(K39)(GS)(OKN)(PST) COMPND 18 (GS)(GS)(PST)(PST)(AS)(PST)(GS) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANXA2, ANX2, ANX2L4, CAL1H, LPC2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS NUCLEIC ACID BINDING, ASO, ANTISENSE OLIGONUCLEOTIDE, KEYWDS 2 PHOSPHOROTHIOATE, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HYJEK-SKLADANOWSKA,B.ANDERSON,V.MYKHAYLYK,C.ORR,A.WAGNER, AUTHOR 2 K.SKOWRONEK,P.SETH,M.NOWOTNY REVDAT 4 07-FEB-24 7ZVX 1 REMARK REVDAT 3 01-MAR-23 7ZVX 1 JRNL REVDAT 2 05-OCT-22 7ZVX 1 JRNL REVDAT 1 14-SEP-22 7ZVX 0 JRNL AUTH M.HYJEK-SKLADANOWSKA,B.A.ANDERSON,V.MYKHAYLYK,C.ORR, JRNL AUTH 2 A.WAGNER,J.T.POZNANSKI,K.SKOWRONEK,P.SETH,M.NOWOTNY JRNL TITL STRUCTURES OF ANNEXIN A2-PS DNA COMPLEXES SHOW DOMINANCE OF JRNL TITL 2 HYDROPHOBIC INTERACTIONS IN PHOSPHOROTHIOATE BINDING. JRNL REF NUCLEIC ACIDS RES. V. 51 1409 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36124719 JRNL DOI 10.1093/NAR/GKAC774 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 29132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8500 - 5.1600 0.98 2903 153 0.1844 0.1834 REMARK 3 2 5.1600 - 4.1000 1.00 2892 152 0.1506 0.2050 REMARK 3 3 4.1000 - 3.5800 0.99 2847 150 0.1496 0.2130 REMARK 3 4 3.5800 - 3.2500 0.97 2799 147 0.1688 0.2243 REMARK 3 5 3.2500 - 3.0200 1.00 2847 150 0.1776 0.2842 REMARK 3 6 3.0200 - 2.8400 1.00 2849 150 0.1923 0.2775 REMARK 3 7 2.8400 - 2.7000 0.99 2862 151 0.2422 0.3119 REMARK 3 8 2.7000 - 2.5800 1.00 2859 150 0.2553 0.3262 REMARK 3 9 2.5800 - 2.4800 1.00 2851 150 0.2589 0.3276 REMARK 3 10 2.4800 - 2.4000 0.70 1967 103 0.3296 0.3858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.354 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5255 REMARK 3 ANGLE : 0.945 7070 REMARK 3 CHIRALITY : 0.047 788 REMARK 3 PLANARITY : 0.008 993 REMARK 3 DIHEDRAL : 6.402 915 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS V3 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% W/V PEG 8000, 24% V/V ETHYLENE REMARK 280 GLYCOL, 0.02 M SODIUM FORMATE/AMMONIUM ACETATE/TRISODIUM CITRATE/ REMARK 280 SODIUM POTASSIUM L-TARTRATE/SODIUM OXAMATE, 0.1 M MES/IMIDAZOLE REMARK 280 PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.18000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 K39 C 86 REMARK 465 N7X C 87 REMARK 465 N7X C 88 REMARK 465 K2F C 89 REMARK 465 K39 C 90 REMARK 465 GS C 91 REMARK 465 OKN C 92 REMARK 465 PST C 93 REMARK 465 GS C 94 REMARK 465 GS C 95 REMARK 465 PST C 96 REMARK 465 PST C 97 REMARK 465 AS C 98 REMARK 465 PST C 99 REMARK 465 GS C 100 REMARK 465 PST C 107 REMARK 465 PST C 108 REMARK 465 PST C 109 REMARK 465 PST C 110 REMARK 465 PST C 111 REMARK 465 PST C 112 REMARK 465 PST C 113 REMARK 465 PST C 114 REMARK 465 PST C 115 REMARK 465 K39 D 86 REMARK 465 N7X D 87 REMARK 465 N7X D 88 REMARK 465 K2F D 89 REMARK 465 K39 D 90 REMARK 465 GS D 91 REMARK 465 OKN D 92 REMARK 465 PST D 93 REMARK 465 GS D 94 REMARK 465 GS D 95 REMARK 465 PST D 96 REMARK 465 PST D 97 REMARK 465 AS D 98 REMARK 465 PST D 99 REMARK 465 GS D 100 REMARK 465 PST D 104 REMARK 465 PST D 105 REMARK 465 PST D 106 REMARK 465 PST D 107 REMARK 465 PST D 108 REMARK 465 PST D 109 REMARK 465 PST D 110 REMARK 465 PST D 111 REMARK 465 PST D 112 REMARK 465 PST D 113 REMARK 465 PST D 114 REMARK 465 PST D 115 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 33 OG REMARK 470 ARG A 37 NE CZ NH1 NH2 REMARK 470 LYS A 47 CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ARG A 78 CZ NH1 NH2 REMARK 470 LYS A 80 CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLU A 82 CD OE1 OE2 REMARK 470 LYS A 88 CE NZ REMARK 470 LEU A 121 CG CD1 CD2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 SER A 164 OG REMARK 470 ARG A 178 CD NE CZ NH1 NH2 REMARK 470 VAL A 185 CG1 CG2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 246 CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 ARG A 284 NE CZ NH1 NH2 REMARK 470 LYS A 286 CE NZ REMARK 470 LYS A 329 CD CE NZ REMARK 470 ARG B 37 NE CZ NH1 NH2 REMARK 470 LYS B 47 NZ REMARK 470 GLU B 53 OE1 OE2 REMARK 470 ARG B 78 CZ NH1 NH2 REMARK 470 LYS B 81 CE NZ REMARK 470 GLU B 82 CD OE1 OE2 REMARK 470 LYS B 88 CE NZ REMARK 470 LEU B 121 CG CD1 CD2 REMARK 470 GLU B 149 CD OE1 OE2 REMARK 470 ARG B 178 CZ NH1 NH2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 LYS B 246 NZ REMARK 470 ARG B 284 NE CZ NH1 NH2 REMARK 470 LYS B 286 CE NZ REMARK 470 LYS B 308 NZ REMARK 470 LYS B 329 CD CE NZ REMARK 470 ASP B 338 CG OD1 OD2 REMARK 470 PST C 101 OP1 REMARK 470 PST C 106 C4' O4' C3' O3' C2' C1' N1 REMARK 470 PST C 106 C2 O2 N3 C4 O4 C5 C5M REMARK 470 PST C 106 C6 REMARK 470 PST D 101 OP1 REMARK 470 PST D 103 C4' O4' C3' O3' C2' C1' N1 REMARK 470 PST D 103 C2 O2 N3 C4 O4 C5 C5M REMARK 470 PST D 103 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 538 O HOH B 546 2.03 REMARK 500 O HOH A 571 O HOH A 605 2.14 REMARK 500 NZ LYS A 104 O HOH A 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 508 O HOH B 538 2556 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 51 129.28 62.68 REMARK 500 SER A 64 171.81 -58.24 REMARK 500 ASP A 187 77.97 -103.53 REMARK 500 ASP A 299 29.69 -143.26 REMARK 500 VAL B 51 128.94 68.53 REMARK 500 LYS B 152 -12.78 81.52 REMARK 500 ASP B 187 76.29 -108.30 REMARK 500 VAL B 298 -76.67 -95.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 612 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B 625 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 626 DISTANCE = 6.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 88 O REMARK 620 2 LEU A 91 O 72.1 REMARK 620 3 HOH A 592 O 98.3 129.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 118 O REMARK 620 2 GLY A 120 O 94.3 REMARK 620 3 GLY A 122 O 117.8 103.6 REMARK 620 4 ASP A 162 OD1 90.6 111.8 132.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 234 OG REMARK 620 2 MET A 278 O 79.5 REMARK 620 3 GLY A 280 O 79.2 4.3 REMARK 620 4 GLY A 282 O 75.7 4.2 4.5 REMARK 620 5 ASP A 322 OD1 80.6 2.4 6.6 6.2 REMARK 620 6 ASP A 322 OD2 77.6 3.0 6.8 4.3 3.0 REMARK 620 7 HOH A 535 O 79.4 1.1 3.3 3.8 3.4 3.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 247 OE1 REMARK 620 2 GLU A 247 OE2 42.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 606 O REMARK 620 2 LYS B 88 O 150.4 REMARK 620 3 LEU B 91 O 121.4 77.5 REMARK 620 4 HOH B 577 O 83.7 66.7 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 118 O REMARK 620 2 GLY B 120 O 100.4 REMARK 620 3 GLY B 122 O 100.5 95.9 REMARK 620 4 ASP B 162 OD1 88.4 149.5 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 202 O REMARK 620 2 ARG B 205 O 79.2 REMARK 620 3 GLY B 207 O 99.9 107.7 REMARK 620 4 GLU B 247 OE1 85.9 157.4 91.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 234 OG REMARK 620 2 MET B 278 O 81.6 REMARK 620 3 GLY B 280 O 81.1 4.7 REMARK 620 4 GLY B 282 O 77.7 4.3 4.5 REMARK 620 5 ASP B 322 OD1 82.7 2.2 6.8 6.2 REMARK 620 6 ASP B 322 OD2 79.7 2.8 7.0 4.3 3.0 REMARK 620 7 HOH B 553 O 81.4 1.5 3.3 3.7 3.5 4.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 253 OE1 REMARK 620 2 GLU B 253 OE2 44.2 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZVN RELATED DB: PDB REMARK 900 7ZVN CONTAINS THE SAME PROTEIN-NUCLEIC ACID COMPLEX SOLVED WITH REMARK 900 DIFFERENT UNIT CELL PARAMETERS AND DIFFERENT CRYSTAL PACKING DBREF 7ZVX A 34 339 UNP P07355 ANXA2_HUMAN 34 339 DBREF 7ZVX B 34 339 UNP P07355 ANXA2_HUMAN 34 339 DBREF 7ZVX C 86 100 PDB 7ZVX 7ZVX 86 100 DBREF 7ZVX C 101 115 PDB 7ZVX 7ZVX 101 115 DBREF 7ZVX D 86 100 PDB 7ZVX 7ZVX 86 100 DBREF 7ZVX D 101 115 PDB 7ZVX 7ZVX 101 115 SEQADV 7ZVX SER A 33 UNP P07355 EXPRESSION TAG SEQADV 7ZVX ALA A 293 UNP P07355 VAL 293 VARIANT SEQADV 7ZVX SER B 33 UNP P07355 EXPRESSION TAG SEQADV 7ZVX ALA B 293 UNP P07355 VAL 293 VARIANT SEQRES 1 A 307 SER ASP ALA GLU ARG ASP ALA LEU ASN ILE GLU THR ALA SEQRES 2 A 307 ILE LYS THR LYS GLY VAL ASP GLU VAL THR ILE VAL ASN SEQRES 3 A 307 ILE LEU THR ASN ARG SER ASN ALA GLN ARG GLN ASP ILE SEQRES 4 A 307 ALA PHE ALA TYR GLN ARG ARG THR LYS LYS GLU LEU ALA SEQRES 5 A 307 SER ALA LEU LYS SER ALA LEU SER GLY HIS LEU GLU THR SEQRES 6 A 307 VAL ILE LEU GLY LEU LEU LYS THR PRO ALA GLN TYR ASP SEQRES 7 A 307 ALA SER GLU LEU LYS ALA SER MET LYS GLY LEU GLY THR SEQRES 8 A 307 ASP GLU ASP SER LEU ILE GLU ILE ILE CYS SER ARG THR SEQRES 9 A 307 ASN GLN GLU LEU GLN GLU ILE ASN ARG VAL TYR LYS GLU SEQRES 10 A 307 MET TYR LYS THR ASP LEU GLU LYS ASP ILE ILE SER ASP SEQRES 11 A 307 THR SER GLY ASP PHE ARG LYS LEU MET VAL ALA LEU ALA SEQRES 12 A 307 LYS GLY ARG ARG ALA GLU ASP GLY SER VAL ILE ASP TYR SEQRES 13 A 307 GLU LEU ILE ASP GLN ASP ALA ARG ASP LEU TYR ASP ALA SEQRES 14 A 307 GLY VAL LYS ARG LYS GLY THR ASP VAL PRO LYS TRP ILE SEQRES 15 A 307 SER ILE MET THR GLU ARG SER VAL PRO HIS LEU GLN LYS SEQRES 16 A 307 VAL PHE ASP ARG TYR LYS SER TYR SER PRO TYR ASP MET SEQRES 17 A 307 LEU GLU SER ILE ARG LYS GLU VAL LYS GLY ASP LEU GLU SEQRES 18 A 307 ASN ALA PHE LEU ASN LEU VAL GLN CYS ILE GLN ASN LYS SEQRES 19 A 307 PRO LEU TYR PHE ALA ASP ARG LEU TYR ASP SER MET LYS SEQRES 20 A 307 GLY LYS GLY THR ARG ASP LYS VAL LEU ILE ARG ILE MET SEQRES 21 A 307 ALA SER ARG SER GLU VAL ASP MET LEU LYS ILE ARG SER SEQRES 22 A 307 GLU PHE LYS ARG LYS TYR GLY LYS SER LEU TYR TYR TYR SEQRES 23 A 307 ILE GLN GLN ASP THR LYS GLY ASP TYR GLN LYS ALA LEU SEQRES 24 A 307 LEU TYR LEU CYS GLY GLY ASP ASP SEQRES 1 B 307 SER ASP ALA GLU ARG ASP ALA LEU ASN ILE GLU THR ALA SEQRES 2 B 307 ILE LYS THR LYS GLY VAL ASP GLU VAL THR ILE VAL ASN SEQRES 3 B 307 ILE LEU THR ASN ARG SER ASN ALA GLN ARG GLN ASP ILE SEQRES 4 B 307 ALA PHE ALA TYR GLN ARG ARG THR LYS LYS GLU LEU ALA SEQRES 5 B 307 SER ALA LEU LYS SER ALA LEU SER GLY HIS LEU GLU THR SEQRES 6 B 307 VAL ILE LEU GLY LEU LEU LYS THR PRO ALA GLN TYR ASP SEQRES 7 B 307 ALA SER GLU LEU LYS ALA SER MET LYS GLY LEU GLY THR SEQRES 8 B 307 ASP GLU ASP SER LEU ILE GLU ILE ILE CYS SER ARG THR SEQRES 9 B 307 ASN GLN GLU LEU GLN GLU ILE ASN ARG VAL TYR LYS GLU SEQRES 10 B 307 MET TYR LYS THR ASP LEU GLU LYS ASP ILE ILE SER ASP SEQRES 11 B 307 THR SER GLY ASP PHE ARG LYS LEU MET VAL ALA LEU ALA SEQRES 12 B 307 LYS GLY ARG ARG ALA GLU ASP GLY SER VAL ILE ASP TYR SEQRES 13 B 307 GLU LEU ILE ASP GLN ASP ALA ARG ASP LEU TYR ASP ALA SEQRES 14 B 307 GLY VAL LYS ARG LYS GLY THR ASP VAL PRO LYS TRP ILE SEQRES 15 B 307 SER ILE MET THR GLU ARG SER VAL PRO HIS LEU GLN LYS SEQRES 16 B 307 VAL PHE ASP ARG TYR LYS SER TYR SER PRO TYR ASP MET SEQRES 17 B 307 LEU GLU SER ILE ARG LYS GLU VAL LYS GLY ASP LEU GLU SEQRES 18 B 307 ASN ALA PHE LEU ASN LEU VAL GLN CYS ILE GLN ASN LYS SEQRES 19 B 307 PRO LEU TYR PHE ALA ASP ARG LEU TYR ASP SER MET LYS SEQRES 20 B 307 GLY LYS GLY THR ARG ASP LYS VAL LEU ILE ARG ILE MET SEQRES 21 B 307 ALA SER ARG SER GLU VAL ASP MET LEU LYS ILE ARG SER SEQRES 22 B 307 GLU PHE LYS ARG LYS TYR GLY LYS SER LEU TYR TYR TYR SEQRES 23 B 307 ILE GLN GLN ASP THR LYS GLY ASP TYR GLN LYS ALA LEU SEQRES 24 B 307 LEU TYR LEU CYS GLY GLY ASP ASP SEQRES 1 C 30 K39 N7X N7X K2F K39 GS OKN PST GS GS PST PST AS SEQRES 2 C 30 PST GS PST PST PST PST PST PST PST PST PST PST PST SEQRES 3 C 30 PST PST PST PST SEQRES 1 D 30 K39 N7X N7X K2F K39 GS OKN PST GS GS PST PST AS SEQRES 2 D 30 PST GS PST PST PST PST PST PST PST PST PST PST PST SEQRES 3 D 30 PST PST PST PST HET PST C 101 40 HET PST C 102 40 HET PST C 103 40 HET PST C 104 40 HET PST C 105 40 HET PST C 106 10 HET PST D 101 40 HET PST D 102 40 HET PST D 103 10 HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET CA B 401 1 HET CA B 402 1 HET CA B 403 1 HET CA B 404 1 HET CA B 405 1 HET CA B 406 1 HET EDO B 407 4 HET EDO B 408 4 HET EDO B 409 4 HET EDO B 410 4 HET EDO B 411 4 HET EDO B 412 4 HETNAM PST THYMIDINE-5'-THIOPHOSPHATE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PST 9(C10 H15 N2 O7 P S) FORMUL 5 CA 11(CA 2+) FORMUL 10 EDO 13(C2 H6 O2) FORMUL 29 HOH *241(H2 O) HELIX 1 AA1 ASP A 34 LYS A 47 1 14 HELIX 2 AA2 ASP A 52 THR A 61 1 10 HELIX 3 AA3 SER A 64 LYS A 80 1 17 HELIX 4 AA4 GLU A 82 LEU A 91 1 10 HELIX 5 AA5 SER A 92 LEU A 103 1 12 HELIX 6 AA6 THR A 105 MET A 118 1 14 HELIX 7 AA7 ASP A 124 SER A 134 1 11 HELIX 8 AA8 THR A 136 LYS A 152 1 17 HELIX 9 AA9 ASP A 154 SER A 161 1 8 HELIX 10 AB1 SER A 164 LYS A 176 1 13 HELIX 11 AB2 ASP A 187 ALA A 201 1 15 HELIX 12 AB3 ASP A 209 ARG A 220 1 12 HELIX 13 AB4 SER A 221 SER A 236 1 16 HELIX 14 AB5 ASP A 239 VAL A 248 1 10 HELIX 15 AB6 LYS A 249 ASN A 265 1 17 HELIX 16 AB7 ASN A 265 SER A 277 1 13 HELIX 17 AB8 ARG A 284 SER A 296 1 13 HELIX 18 AB9 ASP A 299 GLY A 312 1 14 HELIX 19 AC1 SER A 314 THR A 323 1 10 HELIX 20 AC2 LYS A 324 GLY A 336 1 13 HELIX 21 AC3 ASP B 34 THR B 48 1 15 HELIX 22 AC4 ASP B 52 THR B 61 1 10 HELIX 23 AC5 SER B 64 LYS B 80 1 17 HELIX 24 AC6 GLU B 82 LEU B 91 1 10 HELIX 25 AC7 SER B 92 LEU B 103 1 12 HELIX 26 AC8 THR B 105 LYS B 119 1 15 HELIX 27 AC9 ASP B 124 ARG B 135 1 12 HELIX 28 AD1 THR B 136 LYS B 152 1 17 HELIX 29 AD2 ASP B 154 SER B 161 1 8 HELIX 30 AD3 SER B 164 GLY B 177 1 14 HELIX 31 AD4 ASP B 187 GLY B 202 1 16 HELIX 32 AD5 ASP B 209 ARG B 220 1 12 HELIX 33 AD6 SER B 221 SER B 236 1 16 HELIX 34 AD7 ASP B 239 LYS B 246 1 8 HELIX 35 AD8 LYS B 249 ASN B 265 1 17 HELIX 36 AD9 ASN B 265 LYS B 279 1 15 HELIX 37 AE1 ARG B 284 SER B 296 1 13 HELIX 38 AE2 ASP B 299 GLY B 312 1 14 HELIX 39 AE3 SER B 314 THR B 323 1 10 HELIX 40 AE4 GLY B 325 GLY B 336 1 12 LINK O3'APST C 101 P APST C 102 1555 1555 1.61 LINK O3'BPST C 101 P BPST C 102 1555 1555 1.61 LINK O3'APST C 102 P APST C 103 1555 1555 1.61 LINK O3'BPST C 102 P BPST C 103 1555 1555 1.61 LINK O3'APST C 103 P APST C 104 1555 1555 1.61 LINK O3'BPST C 103 P BPST C 104 1555 1555 1.61 LINK O3'APST C 104 P APST C 105 1555 1555 1.61 LINK O3'BPST C 104 P BPST C 105 1555 1555 1.61 LINK O3'APST C 105 P APST C 106 1555 1555 1.61 LINK O3'BPST C 105 P BPST C 106 1555 1555 1.61 LINK O3'APST D 101 P APST D 102 1555 1555 1.61 LINK O3'BPST D 101 P BPST D 102 1555 1555 1.61 LINK O3'APST D 102 P APST D 103 1555 1555 1.61 LINK O3'BPST D 102 P BPST D 103 1555 1555 1.61 LINK O LYS A 88 CA CA A 403 1555 1555 2.68 LINK O LEU A 91 CA CA A 403 1555 1555 2.60 LINK O MET A 118 CA CA A 401 1555 1555 2.88 LINK O GLY A 120 CA CA A 401 1555 1555 2.89 LINK O GLY A 122 CA CA A 401 1555 1555 2.44 LINK OD1 ASP A 162 CA CA A 401 1555 1555 2.40 LINK OG SER A 234 CA CA A 402 1555 2555 2.61 LINK O ARG A 245 CA CA A 404 1555 1555 3.03 LINK OE1 GLU A 247 CA CA A 405 1555 1555 2.94 LINK OE2 GLU A 247 CA CA A 405 1555 1555 3.16 LINK O MET A 278 CA CA A 402 1555 1555 2.49 LINK O GLY A 280 CA CA A 402 1555 1555 2.48 LINK O GLY A 282 CA CA A 402 1555 1555 2.50 LINK OD1 ASP A 322 CA CA A 402 1555 1555 2.63 LINK OD2 ASP A 322 CA CA A 402 1555 1555 2.62 LINK CA CA A 402 O HOH A 535 1555 2545 2.81 LINK CA CA A 403 O HOH A 592 1555 1555 2.82 LINK O HOH A 606 CA CA B 401 1565 1555 2.98 LINK O LYS B 88 CA CA B 401 1555 1555 2.83 LINK O LEU B 91 CA CA B 401 1555 1555 2.59 LINK O MET B 118 CA CA B 402 1555 1555 2.58 LINK O GLY B 120 CA CA B 402 1555 1555 2.69 LINK O GLY B 122 CA CA B 402 1555 1555 2.80 LINK O THR B 123 CA CA B 406 1555 1555 2.55 LINK OD1 ASP B 162 CA CA B 402 1555 1555 2.44 LINK O GLY B 202 CA CA B 403 1555 1555 2.72 LINK O ARG B 205 CA CA B 403 1555 1555 2.70 LINK O GLY B 207 CA CA B 403 1555 1555 2.31 LINK OG SER B 234 CA CA B 405 1555 2546 2.57 LINK OE1 GLU B 247 CA CA B 403 1555 1555 2.46 LINK OE1 GLU B 253 CA CA B 404 1555 1555 3.01 LINK OE2 GLU B 253 CA CA B 404 1555 1555 2.82 LINK O MET B 278 CA CA B 405 1555 1555 2.55 LINK O GLY B 280 CA CA B 405 1555 1555 2.42 LINK O GLY B 282 CA CA B 405 1555 1555 2.37 LINK OD1 ASP B 322 CA CA B 405 1555 1555 2.79 LINK OD2 ASP B 322 CA CA B 405 1555 1555 2.72 LINK CA CA B 401 O HOH B 577 1555 1555 3.03 LINK CA CA B 405 O HOH B 553 1555 2556 2.73 CRYST1 50.230 60.360 128.430 90.00 97.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019908 0.000000 0.002504 0.00000 SCALE2 0.000000 0.016567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007848 0.00000