HEADER VIRAL PROTEIN 19-MAY-22 7ZWK TITLE CRYSTAL STRUCTURE OF UNLINKED NS2B-NS3 PROTEASE FROM ZIKA VIRUS IN TITLE 2 COMPLEX WITH INHIBITOR MI-2162 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT,NON-STRUCTURAL COMPND 5 PROTEIN 2B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SERINE PROTEASE NS3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT,NON-STRUCTURAL COMPND 11 PROTEIN 3; COMPND 12 EC: 3.4.21.91,3.6.1.15,3.6.4.13; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: (1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYL 2,6- COMPND 16 DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: BZIPRO; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 9 ORGANISM_TAXID: 64320; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BZIPRO; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS FLAVIVIRIN, SERINE PROTEASE, VIRAL PROTEIN, NS2B-NS3, ZIKA VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.HUBER,T.STEINMETZER REVDAT 2 07-FEB-24 7ZWK 1 LINK REVDAT 1 22-MAR-23 7ZWK 0 JRNL AUTH S.HUBER,N.BRAUN,T.STEINMETZER JRNL TITL CRYSTAL STRUCTURE OF UNLINKED NS2B-NS3 PROTEASE FROM ZIKA JRNL TITL 2 VIRUS IN COMPLEX WITH INHIBITOR MI-2162 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4700 - 3.4200 1.00 2918 153 0.1562 0.1817 REMARK 3 2 3.4200 - 2.7100 1.00 2701 142 0.1859 0.2530 REMARK 3 3 2.7100 - 2.3700 1.00 2657 140 0.2078 0.2470 REMARK 3 4 2.3700 - 2.1500 1.00 2634 139 0.1811 0.2539 REMARK 3 5 2.1500 - 2.0000 1.00 2597 137 0.1920 0.2760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.207 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.594 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1476 REMARK 3 ANGLE : 0.795 2015 REMARK 3 CHIRALITY : 0.055 225 REMARK 3 PLANARITY : 0.005 271 REMARK 3 DIHEDRAL : 13.711 856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4139 -15.2049 -13.3759 REMARK 3 T TENSOR REMARK 3 T11: 0.4868 T22: 0.3241 REMARK 3 T33: 0.3936 T12: 0.0920 REMARK 3 T13: -0.0175 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 5.9433 L22: 5.1667 REMARK 3 L33: 5.7111 L12: 5.4991 REMARK 3 L13: -5.8208 L23: -5.4124 REMARK 3 S TENSOR REMARK 3 S11: -0.2413 S12: -0.4927 S13: -0.9059 REMARK 3 S21: -0.1762 S22: -0.7234 S23: -0.7817 REMARK 3 S31: 0.2488 S32: 0.2771 S33: 1.0111 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8347 0.0622 -28.0815 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.3735 REMARK 3 T33: 0.2827 T12: 0.0886 REMARK 3 T13: 0.0548 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.1353 L22: 2.9895 REMARK 3 L33: 0.1972 L12: 0.1067 REMARK 3 L13: -0.2048 L23: 0.6771 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: 0.4043 S13: -0.1484 REMARK 3 S21: 0.0232 S22: 0.1090 S23: 0.0189 REMARK 3 S31: -0.2953 S32: -0.1114 S33: -0.1789 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2772 6.2337 -16.2629 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.1936 REMARK 3 T33: 0.2440 T12: 0.0362 REMARK 3 T13: -0.0372 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 3.9704 L22: 2.4189 REMARK 3 L33: 2.4081 L12: 0.3390 REMARK 3 L13: -1.0055 L23: -2.2480 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: 0.0155 S13: 0.2176 REMARK 3 S21: -0.2003 S22: 0.0220 S23: 0.2520 REMARK 3 S31: -0.1621 S32: -0.3679 S33: -0.0019 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3509 -8.9840 -17.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.2114 T22: 0.2642 REMARK 3 T33: 0.2213 T12: 0.0778 REMARK 3 T13: 0.0056 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 6.8586 L22: 6.1084 REMARK 3 L33: 5.6559 L12: 3.2085 REMARK 3 L13: -2.9714 L23: -2.8726 REMARK 3 S TENSOR REMARK 3 S11: 0.2739 S12: -0.6439 S13: -0.2045 REMARK 3 S21: 0.3697 S22: -0.3022 S23: -0.2534 REMARK 3 S31: 0.1154 S32: 0.7500 S33: 0.0252 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2885 -12.7098 -15.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.2839 T22: 0.2530 REMARK 3 T33: 0.2292 T12: 0.0293 REMARK 3 T13: -0.0234 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.2711 L22: 3.5376 REMARK 3 L33: 3.3014 L12: 2.8742 REMARK 3 L13: 0.2079 L23: 0.9831 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.0356 S13: -0.2007 REMARK 3 S21: -0.0935 S22: -0.1304 S23: 0.0806 REMARK 3 S31: 0.4517 S32: -0.0323 S33: 0.0370 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9969 -3.4623 -10.2039 REMARK 3 T TENSOR REMARK 3 T11: 0.2358 T22: 0.2668 REMARK 3 T33: 0.1861 T12: 0.0451 REMARK 3 T13: -0.0261 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1915 L22: 2.8650 REMARK 3 L33: 2.3374 L12: 2.4186 REMARK 3 L13: 0.0327 L23: 0.0556 REMARK 3 S TENSOR REMARK 3 S11: 0.2152 S12: 0.0041 S13: -0.2921 REMARK 3 S21: 0.1272 S22: -0.0575 S23: -0.1753 REMARK 3 S31: -0.0356 S32: 0.0854 S33: -0.1228 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2281 -7.8506 -5.3903 REMARK 3 T TENSOR REMARK 3 T11: 0.3207 T22: 0.2852 REMARK 3 T33: 0.2866 T12: 0.0004 REMARK 3 T13: -0.1008 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.5208 L22: 3.2369 REMARK 3 L33: 2.1633 L12: 0.2252 REMARK 3 L13: 1.8803 L23: -0.1424 REMARK 3 S TENSOR REMARK 3 S11: 0.2196 S12: -0.2843 S13: -0.4083 REMARK 3 S21: 0.5341 S22: 0.2150 S23: -0.1630 REMARK 3 S31: 0.5318 S32: 0.1657 S33: -0.3710 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2350 -0.2932 -6.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.3080 REMARK 3 T33: 0.2054 T12: 0.0139 REMARK 3 T13: -0.0416 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 7.2200 L22: 1.3101 REMARK 3 L33: 1.3226 L12: -1.8011 REMARK 3 L13: -1.3797 L23: -0.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.2359 S12: 0.0277 S13: 0.1526 REMARK 3 S21: -0.0274 S22: -0.1486 S23: -0.1173 REMARK 3 S31: -0.1286 S32: -0.0627 S33: -0.0716 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0238 9.2697 -16.3600 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.2587 REMARK 3 T33: 0.3043 T12: 0.0453 REMARK 3 T13: 0.0392 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 7.7488 L22: 4.8818 REMARK 3 L33: 5.6790 L12: -4.9953 REMARK 3 L13: 5.9876 L23: -4.6860 REMARK 3 S TENSOR REMARK 3 S11: -0.2609 S12: 0.1643 S13: 0.9460 REMARK 3 S21: 0.1898 S22: -0.2370 S23: -0.4532 REMARK 3 S31: -0.9742 S32: 0.2387 S33: 0.4001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8246 -4.5695 -26.0603 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: 0.2661 REMARK 3 T33: 0.2641 T12: 0.0724 REMARK 3 T13: -0.0221 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.0769 L22: 7.1311 REMARK 3 L33: 0.0488 L12: -0.2260 REMARK 3 L13: 0.2231 L23: -0.2153 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: 0.2540 S13: -0.0773 REMARK 3 S21: -0.4542 S22: 0.0860 S23: -0.1172 REMARK 3 S31: -0.0179 S32: -0.0386 S33: -0.1826 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9444 4.6581 -20.1215 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2640 REMARK 3 T33: 0.2237 T12: 0.0608 REMARK 3 T13: -0.0402 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.6571 L22: 3.3471 REMARK 3 L33: 1.4478 L12: -0.7075 REMARK 3 L13: -0.5252 L23: -1.4244 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: 0.0755 S13: 0.1799 REMARK 3 S21: -0.1537 S22: -0.0048 S23: 0.1418 REMARK 3 S31: -0.1792 S32: -0.2689 S33: -0.0724 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3368 7.5896 -23.1919 REMARK 3 T TENSOR REMARK 3 T11: 0.3093 T22: 0.1929 REMARK 3 T33: 0.2847 T12: 0.0353 REMARK 3 T13: 0.0123 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 7.7898 L22: 4.7656 REMARK 3 L33: 4.0664 L12: -2.2059 REMARK 3 L13: -0.5092 L23: -3.8744 REMARK 3 S TENSOR REMARK 3 S11: 0.2218 S12: 0.2715 S13: 0.4569 REMARK 3 S21: -0.3761 S22: -0.3563 S23: 0.0807 REMARK 3 S31: -0.3128 S32: 0.4274 S33: 0.0874 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3280 3.1730 -16.8202 REMARK 3 T TENSOR REMARK 3 T11: 0.2155 T22: 0.2399 REMARK 3 T33: 0.1897 T12: 0.0570 REMARK 3 T13: -0.0356 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.1436 L22: 4.2622 REMARK 3 L33: 2.2013 L12: 1.0778 REMARK 3 L13: -1.0804 L23: -0.8703 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: 0.0570 S13: 0.0770 REMARK 3 S21: -0.0691 S22: 0.0379 S23: 0.2506 REMARK 3 S31: -0.0032 S32: -0.2827 S33: 0.1080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 24.83 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 23.95 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6 0.2 M REMARK 280 AMMONIUM SULFATE 22% PEG2000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.12200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 162.18300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.06100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.12200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.06100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 162.18300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 360 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 VAL A 87 CG1 CG2 REMARK 470 ARG B 28 CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 30 CD1 CD2 REMARK 470 SER B 33 OG REMARK 470 LYS B 54 CE NZ REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 117 CE NZ REMARK 470 LYS B 119 CD CE NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 80 -9.92 74.08 REMARK 500 LEU B 92 -38.54 -131.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZWK A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF 7ZWK B 1 177 UNP Q32ZE1 POLG_ZIKV 1499 1675 DBREF 7ZWK C 1 7 PDB 7ZWK 7ZWK 1 7 SEQADV 7ZWK MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 7ZWK THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZWK GLY B 0 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZWK LYS B 107 UNP Q32ZE1 ARG 1605 CONFLICT SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU SEQRES 1 C 7 V7T GLY GLY GLY DPN LYS LYS HET V7T C 1 12 HET DPN C 5 11 HET SO4 B 201 5 HETNAM V7T (2R)-6-AZANYL-2-CARBAMIMIDAMIDO-HEXANOIC ACID HETNAM DPN D-PHENYLALANINE HETNAM SO4 SULFATE ION FORMUL 3 V7T C7 H16 N4 O2 FORMUL 3 DPN C9 H11 N O2 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *104(H2 O) HELIX 1 AA1 MET B 49 LYS B 54 1 6 HELIX 2 AA2 PRO B 131 SER B 135 5 5 HELIX 3 AA3 V7T C 1 DPN C 5 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 MET A 51 GLY A 57 1 N MET A 51 O ARG B 59 SHEET 4 AA1 8 GLY B 21 THR B 27 -1 O VAL B 22 N ALA A 56 SHEET 5 AA1 8 THR B 34 GLN B 42 -1 O GLY B 37 N VAL B 25 SHEET 6 AA1 8 VAL B 45 THR B 48 -1 O HIS B 47 N VAL B 40 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TRP B 69 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N LEU B 97 O ILE B 109 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 LINK C V7T C 1 N GLY C 2 1555 1555 1.34 LINK NZ V7T C 1 C LYS C 7 1555 1555 1.34 LINK C GLY C 4 N DPN C 5 1555 1555 1.34 LINK C DPN C 5 N LYS C 6 1555 1555 1.34 CRYST1 42.268 42.268 216.244 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023659 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004624 0.00000