HEADER TRANSCRIPTION 19-MAY-22 7ZWZ TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, CANCER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.W.COLLIE,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 2 31-JAN-24 7ZWZ 1 REMARK REVDAT 1 16-NOV-22 7ZWZ 0 JRNL AUTH O.A.PIERRAT,M.LIU,G.W.COLLIE,K.SHETTY,M.J.RODRIGUES, JRNL AUTH 2 Y.V.LE BIHAN,E.A.GUNNELL,P.C.MCANDREW,M.STUBBS,M.G.ROWLANDS, JRNL AUTH 3 N.YAHYA,E.SHEHU,R.TALBOT,L.PICKARD,B.R.BELLENIE,K.J.CHEUNG, JRNL AUTH 4 L.DROUIN,P.INNOCENTI,H.WOODWARD,O.A.DAVIS,M.G.LLOYD, JRNL AUTH 5 A.VARELA,R.HUCKVALE,F.BROCCATELLI,M.CARTER,D.GALIWANGO, JRNL AUTH 6 A.HAYES,F.I.RAYNAUD,C.BRYANT,S.WHITTAKER,O.W.ROSSANESE, JRNL AUTH 7 S.HOELDER,R.BURKE,R.L.M.VAN MONTFORT JRNL TITL DISCOVERING CELL-ACTIVE BCL6 INHIBITORS: EFFECTIVELY JRNL TITL 2 COMBINING BIOCHEMICAL HTS WITH MULTIPLE BIOPHYSICAL JRNL TITL 3 TECHNIQUES, X-RAY CRYSTALLOGRAPHY AND CELL-BASED ASSAYS. JRNL REF SCI REP V. 12 18633 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 36329085 JRNL DOI 10.1038/S41598-022-23264-Z REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2305 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 898 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2334 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 855 REMARK 3 BIN R VALUE (WORKING SET) : 0.2333 REMARK 3 BIN FREE R VALUE : 0.2343 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.79 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66850 REMARK 3 B22 (A**2) : -1.66850 REMARK 3 B33 (A**2) : 3.33700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.048 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.046 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.044 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.043 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1206 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1643 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 435 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 232 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1206 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 160 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 19 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1639 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|5 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): -29.1989 27.5771 12.6231 REMARK 3 T TENSOR REMARK 3 T11: -0.0311 T22: -0.0091 REMARK 3 T33: -0.0473 T12: -0.0282 REMARK 3 T13: -0.0004 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.9747 L22: 0.8117 REMARK 3 L33: 4.1944 L12: 0.7093 REMARK 3 L13: -2.5283 L23: -1.0184 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.0694 S13: 0.0823 REMARK 3 S21: 0.0963 S22: -0.0450 S23: -0.0080 REMARK 3 S31: -0.2358 S32: 0.2972 S33: -0.0099 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|28 - 33} REMARK 3 ORIGIN FOR THE GROUP (A): -43.3574 21.5162 19.2817 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0497 REMARK 3 T33: 0.0347 T12: 0.0029 REMARK 3 T13: 0.0158 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 2.8421 L22: 1.4539 REMARK 3 L33: 3.4747 L12: -1.7193 REMARK 3 L13: 0.6234 L23: -0.4660 REMARK 3 S TENSOR REMARK 3 S11: 0.0829 S12: -0.1003 S13: -0.0224 REMARK 3 S21: -0.0253 S22: 0.0347 S23: 0.5174 REMARK 3 S31: -0.0416 S32: -0.2949 S33: -0.1176 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|34 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): -39.8800 10.2319 33.4126 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.0206 REMARK 3 T33: -0.0069 T12: -0.0134 REMARK 3 T13: 0.0209 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 0.2103 L22: 0.8849 REMARK 3 L33: 3.0294 L12: -0.0049 REMARK 3 L13: -3.7322 L23: 0.8131 REMARK 3 S TENSOR REMARK 3 S11: -0.1055 S12: -0.2078 S13: -0.0038 REMARK 3 S21: 0.3216 S22: 0.1293 S23: 0.2018 REMARK 3 S31: -0.0104 S32: -0.0435 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|41 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): -39.7229 15.6871 29.0491 REMARK 3 T TENSOR REMARK 3 T11: -0.0266 T22: -0.0409 REMARK 3 T33: -0.0771 T12: -0.0056 REMARK 3 T13: 0.0231 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.1264 L22: 2.6463 REMARK 3 L33: 2.4435 L12: -0.1489 REMARK 3 L13: -0.5111 L23: -1.0523 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.2347 S13: -0.0362 REMARK 3 S21: 0.4016 S22: 0.0757 S23: 0.1263 REMARK 3 S31: 0.0435 S32: -0.1531 S33: -0.0488 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|47 - 68} REMARK 3 ORIGIN FOR THE GROUP (A): -34.4630 6.8861 17.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: -0.0392 REMARK 3 T33: -0.0102 T12: -0.0084 REMARK 3 T13: -0.0248 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.9138 L22: 1.8570 REMARK 3 L33: 2.6581 L12: 0.7325 REMARK 3 L13: 0.4975 L23: -1.2269 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: 0.0973 S13: -0.1267 REMARK 3 S21: -0.2027 S22: -0.0284 S23: 0.0045 REMARK 3 S31: 0.3879 S32: 0.0270 S33: -0.0875 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|69 - 79} REMARK 3 ORIGIN FOR THE GROUP (A): -36.4136 6.2593 30.4697 REMARK 3 T TENSOR REMARK 3 T11: 0.0385 T22: -0.0698 REMARK 3 T33: -0.0428 T12: -0.0475 REMARK 3 T13: -0.0135 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: -0.2200 L22: 3.6146 REMARK 3 L33: 3.9517 L12: -0.0651 REMARK 3 L13: -0.1267 L23: -0.1155 REMARK 3 S TENSOR REMARK 3 S11: 0.2239 S12: -0.1193 S13: -0.1012 REMARK 3 S21: 0.1685 S22: -0.0714 S23: 0.1386 REMARK 3 S31: 0.2607 S32: -0.1037 S33: -0.1525 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|80 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): -29.6972 18.3103 28.4087 REMARK 3 T TENSOR REMARK 3 T11: 0.0134 T22: -0.0060 REMARK 3 T33: -0.0223 T12: -0.0407 REMARK 3 T13: -0.0079 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.4803 L22: 3.2233 REMARK 3 L33: 2.8409 L12: 0.6986 REMARK 3 L13: 0.0029 L23: -2.0408 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: -0.1283 S13: 0.0010 REMARK 3 S21: 0.3284 S22: -0.0696 S23: 0.0399 REMARK 3 S31: -0.1576 S32: -0.0004 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): -22.4228 22.8083 32.0404 REMARK 3 T TENSOR REMARK 3 T11: -0.0121 T22: -0.0118 REMARK 3 T33: -0.0720 T12: -0.0645 REMARK 3 T13: -0.0335 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.3633 L22: 2.1205 REMARK 3 L33: 0.5496 L12: 1.3294 REMARK 3 L13: -0.6675 L23: 0.5633 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: -0.1715 S13: 0.0798 REMARK 3 S21: 0.2415 S22: -0.1619 S23: -0.0968 REMARK 3 S31: -0.1676 S32: -0.1659 S33: 0.1157 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|102 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): -23.5215 9.9969 30.6106 REMARK 3 T TENSOR REMARK 3 T11: -0.0142 T22: -0.0220 REMARK 3 T33: -0.0120 T12: -0.0235 REMARK 3 T13: -0.0452 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 2.4337 L22: 4.6620 REMARK 3 L33: 4.9650 L12: 2.5717 REMARK 3 L13: 1.8634 L23: 2.1308 REMARK 3 S TENSOR REMARK 3 S11: 0.2266 S12: -0.1513 S13: -0.2462 REMARK 3 S21: 0.3130 S22: -0.1723 S23: -0.2633 REMARK 3 S31: 0.2483 S32: 0.3113 S33: -0.0543 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|115 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): -14.1802 14.5549 30.3623 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: 0.0831 REMARK 3 T33: 0.0796 T12: -0.0432 REMARK 3 T13: -0.0507 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 5.6556 L22: 9.3800 REMARK 3 L33: 0.0000 L12: 1.9962 REMARK 3 L13: 0.9164 L23: -0.0643 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: 0.2028 S13: -0.2356 REMARK 3 S21: 0.2695 S22: -0.1046 S23: -0.6805 REMARK 3 S31: -0.1697 S32: 0.3790 S33: 0.1863 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): -19.4653 31.5860 2.3554 REMARK 3 T TENSOR REMARK 3 T11: -0.0389 T22: 0.0570 REMARK 3 T33: -0.0221 T12: -0.0416 REMARK 3 T13: 0.0031 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 6.0770 L22: 0.7118 REMARK 3 L33: 0.0943 L12: 2.3708 REMARK 3 L13: -0.8868 L23: -1.1266 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: -0.0482 S13: 0.0342 REMARK 3 S21: -0.0520 S22: 0.0628 S23: -0.0255 REMARK 3 S31: -0.0996 S32: -0.0300 S33: -0.1317 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44966 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.90 REMARK 200 R MERGE FOR SHELL (I) : 2.91800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.17500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.35000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.76250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 137.93750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.58750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.17500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.35000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 137.93750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.76250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.58750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -33.76300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 58.47923 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.58750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 315 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 GLN A 64 OE1 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 129 C O REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -120.98 62.98 REMARK 500 SER A 93 -2.87 78.10 REMARK 500 GLN A 113 62.05 64.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZWZ A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7ZWZ B 0 5 PDB 7ZWZ 7ZWZ 0 5 SEQADV 7ZWZ GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7ZWZ PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7ZWZ GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET K6I A 201 28 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET DMS A 206 4 HETNAM K6I ~{N}-(2-FLUOROPHENYL)-2-[3-(3-METHYLBUTYL)-4- HETNAM 2 K6I OXIDANYLIDENE-PTERIDIN-2-YL]SULFANYL-ETHANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 K6I C19 H20 F N5 O2 S FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 DMS C2 H6 O S FORMUL 9 HOH *184(H2 O) HELIX 1 AA1 ARG A 13 ASP A 29 1 17 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 GLU A 129 1 16 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 CRYST1 67.526 67.526 165.525 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014809 0.008550 0.000000 0.00000 SCALE2 0.000000 0.017100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006041 0.00000