HEADER VIRUS 26-MAY-22 8A06 TITLE FLAVOBACTERIUM INFECTING LIPID-CONTAINING PHAGE FLIP PENTON PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENTON PROTEIN P12; COMPND 3 CHAIN: E SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM PHAGE FLIP; SOURCE 3 ORGANISM_TAXID: 2023716 KEYWDS BACTERIOPHAGE, FLAVOBACTERIUM, LIPID-CONTAINING, PHAGE, FLIP, PENTON KEYWDS 2 PROTEIN, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR I.RISSANEN,J.T.HUISKONEN REVDAT 1 14-DEC-22 8A06 0 JRNL AUTH N.KEJZAR,E.LAANTO,I.RISSANEN,V.ABRISHAMI,M.SELVARAJ, JRNL AUTH 2 S.MOINEAU,J.RAVANTTI,L.R.SUNDBERG,J.T.HUISKONEN JRNL TITL CRYO-EM STRUCTURE OF SSDNA BACTERIOPHAGE PHI CJT23 PROVIDES JRNL TITL 2 INSIGHT INTO EARLY VIRUS EVOLUTION. JRNL REF NAT COMMUN V. 13 7478 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36463224 JRNL DOI 10.1038/S41467-022-35123-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.LAANTO,S.MANTYNEN,L.DE COLIBUS,J.MARJAKANGAS,A.GILLUM, REMARK 1 AUTH 2 D.I.STUART,J.J.RAVANTTI,J.T.HUISKONEN,L.R.SUNDBERG REMARK 1 TITL VIRUS FOUND IN A BOREAL LAKE LINKS SSDNA AND DSDNA VIRUSES. REMARK 1 REF PROC NATL ACAD SCI U S A V. 114 8378 2017 REMARK 1 REFN ESSN 1091-6490 REMARK 1 DOI 10.1073/PNAS.1703834114 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : COOT, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 28212 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8A06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123208. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : FLAVOBACTERIUM PHAGE FLIP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15051 RELATED DB: EMDB REMARK 900 FLAVOBACTERIUM INFECTING LIPID-CONTAINING PHAGE FLIP PENTON PROTEIN DBREF1 8A06 E -2 144 UNP A0A222NP85_9VIRU DBREF2 8A06 E A0A222NP85 2 148 SEQRES 1 E 147 ASP PHE SER THR ILE PRO ILE ASP TYR VAL LYS ALA LYS SEQRES 2 E 147 ASP PRO ASN THR ILE ASP PHE CYS LEU SER TYR LEU GLU SEQRES 3 E 147 LEU TYR HIS THR THR LYS ALA VAL LYS ALA CYS THR PRO SEQRES 4 E 147 PHE SER PHE ILE LEU GLY SER ASP ALA GLY MET GLN ARG SEQRES 5 E 147 ALA THR GLU THR THR GLU SER LEU TYR TRP GLY LYS VAL SEQRES 6 E 147 ILE LEU ASP ILE ASN PRO ASN LEU SER PRO LEU VAL ASN SEQRES 7 E 147 THR THR ILE VAL LEU GLU ILE GLU SER MET LEU SER SER SEQRES 8 E 147 ASN SER ILE ASN ARG SER GLU ASN LYS ARG ILE THR ARG SEQRES 9 E 147 TYR ILE GLU LYS GLU ASN PHE VAL ASN GLU SER SER GLU SEQRES 10 E 147 ARG PHE GLU PHE PHE LYS SER MET GLU LEU SER HIS LEU SEQRES 11 E 147 SER THR ALA TYR ASP VAL TYR VAL THR PHE ILE GLY PHE SEQRES 12 E 147 LYS ILE ASP LEU HELIX 1 AA1 THR E 14 HIS E 26 1 13 HELIX 2 AA2 SER E 87 ASN E 92 1 6 SHEET 1 AA1 4 CYS E 34 GLY E 42 0 SHEET 2 AA1 4 TYR E 131 ASP E 143 -1 O LYS E 141 N THR E 35 SHEET 3 AA1 4 SER E 56 PRO E 68 -1 N TRP E 59 O PHE E 140 SHEET 4 AA1 4 GLU E 111 PHE E 119 -1 O PHE E 119 N TYR E 58 SHEET 1 AA2 3 GLU E 95 TYR E 102 0 SHEET 2 AA2 3 THR E 77 SER E 84 -1 N ILE E 82 O LYS E 97 SHEET 3 AA2 3 MET E 122 HIS E 126 -1 O GLU E 123 N GLU E 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000