HEADER ANTIMICROBIAL PROTEIN 01-JUN-22 8A1L TITLE CRYSTAL STRUCTURE OF THE TRANSPEPTIDASE LDTMT2 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH ALPHA-CHLORO KETONE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L,D-TRANSPEPTIDASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LDT 2,LDT(MT2); COMPND 5 EC: 2.3.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: LDTB, MT2594, V735_02606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS L, D-TRANSPEPTIDASE, LDTMT2, INHIBITOR, COVALENT, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DE MUNNIK,P.A.LANG,J.BREM,C.J.SCHOFIELD REVDAT 3 07-FEB-24 8A1L 1 REMARK REVDAT 2 02-AUG-23 8A1L 1 JRNL REVDAT 1 14-JUN-23 8A1L 0 JRNL AUTH M.DE MUNNIK,P.A.LANG,F.DE DIOS ANTON,M.CACHO,R.H.BATES, JRNL AUTH 2 J.BREM,B.RODRIGUEZ MIQUEL,C.J.SCHOFIELD JRNL TITL HIGH-THROUGHPUT SCREEN WITH THE L,D-TRANSPEPTIDASE LDT MT2 JRNL TITL 2 OF MYCOBACTERIUM TUBERCULOSIS REVEALS NOVEL CLASSES OF JRNL TITL 3 COVALENTLY REACTING INHIBITORS. JRNL REF CHEM SCI V. 14 7262 2023 JRNL REFN ISSN 2041-6520 JRNL PMID 37416715 JRNL DOI 10.1039/D2SC06858C REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 38273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.6900 - 5.5500 1.00 2676 137 0.1954 0.2127 REMARK 3 2 5.5500 - 4.4100 1.00 2627 151 0.1505 0.1549 REMARK 3 3 4.4100 - 3.8500 1.00 2620 132 0.1706 0.2113 REMARK 3 4 3.8500 - 3.5000 0.96 2535 128 0.2334 0.2543 REMARK 3 5 3.5000 - 3.2500 1.00 2594 150 0.2090 0.2530 REMARK 3 6 3.2500 - 3.0600 1.00 2634 120 0.2231 0.2281 REMARK 3 7 3.0600 - 2.9000 1.00 2593 148 0.2385 0.2883 REMARK 3 8 2.9000 - 2.7800 1.00 2603 141 0.2594 0.3107 REMARK 3 9 2.7800 - 2.6700 1.00 2552 176 0.2676 0.3632 REMARK 3 10 2.6700 - 2.5800 1.00 2593 128 0.2702 0.3084 REMARK 3 11 2.5800 - 2.5000 0.99 2604 151 0.2660 0.3052 REMARK 3 12 2.5000 - 2.4300 1.00 2596 129 0.2710 0.3005 REMARK 3 13 2.4300 - 2.3600 0.99 2581 123 0.2845 0.3533 REMARK 3 14 2.3600 - 2.3000 0.97 2514 137 0.3180 0.3575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9329-101.3251 24.4036 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.3574 REMARK 3 T33: 0.3674 T12: 0.0560 REMARK 3 T13: -0.0051 T23: 0.0686 REMARK 3 L TENSOR REMARK 3 L11: 0.4503 L22: 0.4041 REMARK 3 L33: 3.9181 L12: -0.1004 REMARK 3 L13: -0.2616 L23: 1.0968 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: 0.1440 S13: 0.0570 REMARK 3 S21: -0.1089 S22: -0.0337 S23: -0.0419 REMARK 3 S31: -0.2187 S32: -0.0471 S33: -0.0634 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5009 -90.0012 52.6865 REMARK 3 T TENSOR REMARK 3 T11: 0.3820 T22: 0.5307 REMARK 3 T33: 0.4694 T12: -0.1337 REMARK 3 T13: -0.0066 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 3.2486 L22: 3.0667 REMARK 3 L33: 2.7976 L12: -1.5622 REMARK 3 L13: -0.4168 L23: 0.3340 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.1568 S13: 0.7866 REMARK 3 S21: 0.0858 S22: -0.0725 S23: -0.6050 REMARK 3 S31: -0.5190 S32: 1.0798 S33: 0.0339 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9628 -91.2785 53.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.3054 REMARK 3 T33: 0.3283 T12: -0.0203 REMARK 3 T13: 0.0335 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.8428 L22: 2.8023 REMARK 3 L33: 4.9120 L12: -0.7374 REMARK 3 L13: 1.5506 L23: -1.5069 REMARK 3 S TENSOR REMARK 3 S11: 0.1345 S12: -0.2727 S13: 0.2593 REMARK 3 S21: -0.0410 S22: -0.2437 S23: -0.2263 REMARK 3 S31: -0.1832 S32: 0.3144 S33: 0.1049 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3805 -78.0243 -35.7313 REMARK 3 T TENSOR REMARK 3 T11: 0.2634 T22: 0.2945 REMARK 3 T33: 0.3285 T12: 0.0633 REMARK 3 T13: 0.0540 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.7926 L22: 6.9408 REMARK 3 L33: 6.0330 L12: 1.0922 REMARK 3 L13: 1.9122 L23: -1.1611 REMARK 3 S TENSOR REMARK 3 S11: 0.1656 S12: 0.1521 S13: 0.1910 REMARK 3 S21: -0.4802 S22: -0.0768 S23: 0.1611 REMARK 3 S31: -0.0818 S32: -0.2604 S33: -0.1026 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1442 -92.0329 1.8236 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.5103 REMARK 3 T33: 0.3573 T12: 0.1050 REMARK 3 T13: -0.0255 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.4095 L22: 1.6952 REMARK 3 L33: 1.9641 L12: -0.0577 REMARK 3 L13: 0.1217 L23: -0.1009 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: -0.1595 S13: -0.0655 REMARK 3 S21: 0.3033 S22: 0.2852 S23: -0.1457 REMARK 3 S31: -0.0604 S32: 0.1279 S33: -0.1732 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 290 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6683 -98.6056 15.5265 REMARK 3 T TENSOR REMARK 3 T11: 0.4989 T22: 0.6743 REMARK 3 T33: 0.3825 T12: 0.1405 REMARK 3 T13: 0.0226 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.3721 L22: 0.9456 REMARK 3 L33: 0.6470 L12: 0.5551 REMARK 3 L13: 0.4501 L23: -0.6390 REMARK 3 S TENSOR REMARK 3 S11: -0.0967 S12: -0.0047 S13: -0.0758 REMARK 3 S21: 0.3578 S22: 0.2595 S23: 0.0407 REMARK 3 S31: 0.0577 S32: -0.2517 S33: -0.1693 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 335 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0181 -97.4281 16.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.5319 T22: 0.6952 REMARK 3 T33: 0.4095 T12: 0.2806 REMARK 3 T13: -0.0354 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.9532 L22: 1.5603 REMARK 3 L33: 3.3021 L12: 0.6838 REMARK 3 L13: 0.9016 L23: -0.6236 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.3077 S13: -0.2358 REMARK 3 S21: 0.5254 S22: 0.1572 S23: -0.0317 REMARK 3 S31: -0.0444 S32: -0.3303 S33: -0.1504 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38421 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 61.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6RRM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM NITRATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.38600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 408 REMARK 465 GLN B 54 REMARK 465 SER B 55 REMARK 465 ASP B 56 REMARK 465 ALA B 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 57 CG CD1 CD2 REMARK 470 LYS A 61 CD CE NZ REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 SER A 113 OG REMARK 470 LEU A 131 CD2 REMARK 470 LEU A 133 CD1 REMARK 470 LEU A 141 CD1 CD2 REMARK 470 LYS A 186 NZ REMARK 470 LYS A 189 CE NZ REMARK 470 LYS A 299 CD CE NZ REMARK 470 ILE A 302 CD1 REMARK 470 ASP A 304 CG OD1 OD2 REMARK 470 THR A 307 CG2 REMARK 470 TYR A 308 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 310 CG1 CG2 REMARK 470 VAL A 312 CG2 REMARK 470 ASN A 313 CG OD1 ND2 REMARK 470 TYR A 318 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 407 CE NZ REMARK 470 LEU B 57 CG CD1 CD2 REMARK 470 LEU B 58 CD1 CD2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 THR B 82 CG2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 104 NE CZ NH1 NH2 REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 LYS B 186 NZ REMARK 470 LYS B 189 CE NZ REMARK 470 LEU B 203 CD2 REMARK 470 LYS B 282 NZ REMARK 470 LYS B 299 CD CE NZ REMARK 470 SER B 306 OG REMARK 470 VAL B 310 CG1 CG2 REMARK 470 ASN B 313 CG OD1 ND2 REMARK 470 VAL B 322 CG1 CG2 REMARK 470 ARG B 402 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 227 66.14 -106.98 REMARK 500 MET A 280 -163.75 -100.38 REMARK 500 ASP A 304 -89.95 -79.10 REMARK 500 SER A 305 -54.39 123.69 REMARK 500 HIS A 347 -65.31 -135.86 REMARK 500 ASN A 405 32.64 -141.76 REMARK 500 TYR B 318 156.37 179.05 REMARK 500 HIS B 347 -56.83 -135.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 832 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 833 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 834 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 787 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 788 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 789 DISTANCE = 7.14 ANGSTROMS DBREF 8A1L A 56 408 UNP O53223 LDT2_MYCTO 56 408 DBREF 8A1L B 56 408 UNP O53223 LDT2_MYCTO 56 408 SEQADV 8A1L GLN A 54 UNP O53223 EXPRESSION TAG SEQADV 8A1L SER A 55 UNP O53223 EXPRESSION TAG SEQADV 8A1L GLN B 54 UNP O53223 EXPRESSION TAG SEQADV 8A1L SER B 55 UNP O53223 EXPRESSION TAG SEQRES 1 A 355 GLN SER ASP LEU LEU VAL PRO LYS LEU THR ALA SER VAL SEQRES 2 A 355 THR ASP GLY ALA VAL GLY VAL THR VAL ASP ALA PRO VAL SEQRES 3 A 355 SER VAL THR ALA ALA ASP GLY VAL LEU ALA ALA VAL THR SEQRES 4 A 355 MET VAL ASN ASP ASN GLY ARG PRO VAL ALA GLY ARG LEU SEQRES 5 A 355 SER PRO ASP GLY LEU ARG TRP SER THR THR GLU GLN LEU SEQRES 6 A 355 GLY TYR ASN ARG ARG TYR THR LEU ASN ALA THR ALA LEU SEQRES 7 A 355 GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR PHE GLN SEQRES 8 A 355 THR SER SER PRO ALA HIS LEU THR MET PRO TYR VAL MET SEQRES 9 A 355 PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU PRO VAL SEQRES 10 A 355 ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG GLY ALA SEQRES 11 A 355 ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO PRO VAL SEQRES 12 A 355 GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU VAL ARG SEQRES 13 A 355 TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR ALA VAL SEQRES 14 A 355 ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU GLY GLU SEQRES 15 A 355 GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS PHE THR SEQRES 16 A 355 ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP ASN THR SEQRES 17 A 355 LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL VAL LYS SEQRES 18 A 355 SER MET PRO THR SER MET GLY LYS ASP SER THR PRO THR SEQRES 19 A 355 ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR LYS HIS SEQRES 20 A 355 ILE ILE MET ASP SER SER THR TYR GLY VAL PRO VAL ASN SEQRES 21 A 355 SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP ALA THR SEQRES 22 A 355 GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER ALA PRO SEQRES 23 A 355 TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SER HIS SEQRES 24 A 355 GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN TRP PHE SEQRES 25 A 355 TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU VAL VAL SEQRES 26 A 355 ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP GLY LEU SEQRES 27 A 355 GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG ALA GLY SEQRES 28 A 355 ASN ALA LYS ALA SEQRES 1 B 355 GLN SER ASP LEU LEU VAL PRO LYS LEU THR ALA SER VAL SEQRES 2 B 355 THR ASP GLY ALA VAL GLY VAL THR VAL ASP ALA PRO VAL SEQRES 3 B 355 SER VAL THR ALA ALA ASP GLY VAL LEU ALA ALA VAL THR SEQRES 4 B 355 MET VAL ASN ASP ASN GLY ARG PRO VAL ALA GLY ARG LEU SEQRES 5 B 355 SER PRO ASP GLY LEU ARG TRP SER THR THR GLU GLN LEU SEQRES 6 B 355 GLY TYR ASN ARG ARG TYR THR LEU ASN ALA THR ALA LEU SEQRES 7 B 355 GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR PHE GLN SEQRES 8 B 355 THR SER SER PRO ALA HIS LEU THR MET PRO TYR VAL MET SEQRES 9 B 355 PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU PRO VAL SEQRES 10 B 355 ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG GLY ALA SEQRES 11 B 355 ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO PRO VAL SEQRES 12 B 355 GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU VAL ARG SEQRES 13 B 355 TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR ALA VAL SEQRES 14 B 355 ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU GLY GLU SEQRES 15 B 355 GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS PHE THR SEQRES 16 B 355 ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP ASN THR SEQRES 17 B 355 LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL VAL LYS SEQRES 18 B 355 SER MET PRO THR SER MET GLY LYS ASP SER THR PRO THR SEQRES 19 B 355 ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR LYS HIS SEQRES 20 B 355 ILE ILE MET ASP SER SER THR TYR GLY VAL PRO VAL ASN SEQRES 21 B 355 SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP ALA THR SEQRES 22 B 355 GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER ALA PRO SEQRES 23 B 355 TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SER HIS SEQRES 24 B 355 GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN TRP PHE SEQRES 25 B 355 TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU VAL VAL SEQRES 26 B 355 ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP GLY LEU SEQRES 27 B 355 GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG ALA GLY SEQRES 28 B 355 ASN ALA LYS ALA HET KS9 A 501 19 HET GOL A 502 6 HET DMS A 503 4 HET EDO A 504 4 HET DMS A 505 4 HET NA A 506 1 HET CL A 507 1 HET KS9 B 501 19 HET EDO B 502 4 HET DMS B 503 4 HET EDO B 504 4 HET DMS B 505 4 HET NA B 506 1 HET CL B 507 1 HETNAM KS9 (PHENYLMETHYL) N-[(3S,4S)-4-METHYL-2-OXIDANYLIDENE- HETNAM 2 KS9 HEXAN-3-YL]CARBAMATE HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN KS9 BENZYL ((3S,4R)-1-CHLORO-4-METHYL-2-OXOHEXAN-3-YL)CARB HETSYN 2 KS9 (REACTED FORM OF) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 KS9 2(C15 H21 N O3) FORMUL 4 GOL C3 H8 O3 FORMUL 5 DMS 4(C2 H6 O S) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 8 NA 2(NA 1+) FORMUL 9 CL 2(CL 1-) FORMUL 17 HOH *423(H2 O) HELIX 1 AA1 ASP A 180 ALA A 187 1 8 HELIX 2 AA2 SER A 305 GLY A 309 5 5 HELIX 3 AA3 PRO A 339 VAL A 342 5 4 HELIX 4 AA4 SER A 358 VAL A 369 1 12 HELIX 5 AA5 GLY A 392 ILE A 396 5 5 HELIX 6 AA6 PRO A 397 GLY A 404 1 8 HELIX 7 AA7 ASP B 180 ALA B 187 1 8 HELIX 8 AA8 SER B 306 TYR B 308 5 3 HELIX 9 AA9 PRO B 339 VAL B 342 5 4 HELIX 10 AB1 SER B 358 VAL B 369 1 12 HELIX 11 AB2 GLY B 392 ILE B 396 5 5 HELIX 12 AB3 PRO B 397 GLY B 404 1 8 SHEET 1 AA1 4 LYS A 61 ALA A 64 0 SHEET 2 AA1 4 SER A 80 ALA A 84 -1 O THR A 82 N THR A 63 SHEET 3 AA1 4 ARG A 111 THR A 114 -1 O TRP A 112 N VAL A 81 SHEET 4 AA1 4 GLY A 103 LEU A 105 -1 N ARG A 104 O SER A 113 SHEET 1 AA2 3 VAL A 87 VAL A 94 0 SHEET 2 AA2 3 ARG A 123 GLY A 132 -1 O THR A 125 N VAL A 94 SHEET 3 AA2 3 GLY A 135 GLN A 144 -1 O LEU A 141 N LEU A 126 SHEET 1 AA3 2 HIS A 150 THR A 152 0 SHEET 2 AA3 2 MET A 237 GLY A 239 1 O PHE A 238 N HIS A 150 SHEET 1 AA4 4 PRO A 154 MET A 157 0 SHEET 2 AA4 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 AA4 4 GLU A 207 PRO A 212 -1 O TRP A 210 N VAL A 170 SHEET 4 AA4 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209 SHEET 1 AA5 4 VAL A 163 VAL A 164 0 SHEET 2 AA5 4 VAL A 243 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 AA5 4 ALA A 221 VAL A 226 -1 N VAL A 224 O THR A 245 SHEET 4 AA5 4 ILE A 188 ASN A 193 -1 N LYS A 189 O ALA A 225 SHEET 1 AA6 5 GLU A 271 PRO A 277 0 SHEET 2 AA6 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 AA6 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 AA6 5 ILE A 374 VAL A 378 1 O GLU A 376 N ALA A 257 SHEET 5 AA6 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 AA7 4 ARG A 297 MET A 303 0 SHEET 2 AA7 4 THR A 320 GLN A 327 -1 O VAL A 322 N ILE A 301 SHEET 3 AA7 4 PHE A 334 SER A 337 -1 O SER A 337 N ASP A 323 SHEET 4 AA7 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 AA8 4 LYS B 61 ALA B 64 0 SHEET 2 AA8 4 SER B 80 ALA B 84 -1 O THR B 82 N THR B 63 SHEET 3 AA8 4 ARG B 111 THR B 114 -1 O TRP B 112 N VAL B 81 SHEET 4 AA8 4 GLY B 103 LEU B 105 -1 N ARG B 104 O SER B 113 SHEET 1 AA9 3 VAL B 87 ASN B 95 0 SHEET 2 AA9 3 ARG B 123 GLY B 132 -1 O THR B 129 N ALA B 89 SHEET 3 AA9 3 GLY B 135 GLN B 144 -1 O ALA B 137 N ALA B 130 SHEET 1 AB1 2 HIS B 150 THR B 152 0 SHEET 2 AB1 2 MET B 237 GLY B 239 1 O PHE B 238 N HIS B 150 SHEET 1 AB2 4 PRO B 154 MET B 157 0 SHEET 2 AB2 4 VAL B 170 PHE B 174 -1 O ARG B 173 N TYR B 155 SHEET 3 AB2 4 GLU B 207 PRO B 212 -1 O TRP B 210 N VAL B 170 SHEET 4 AB2 4 GLY B 198 TRP B 202 -1 N TYR B 201 O ARG B 209 SHEET 1 AB3 4 VAL B 163 VAL B 164 0 SHEET 2 AB3 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 AB3 4 ALA B 221 VAL B 226 -1 N VAL B 224 O THR B 245 SHEET 4 AB3 4 ILE B 188 ASN B 193 -1 N ASN B 193 O ALA B 221 SHEET 1 AB4 5 GLU B 271 PRO B 277 0 SHEET 2 AB4 5 ILE B 263 VAL B 268 -1 N VAL B 266 O LYS B 274 SHEET 3 AB4 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 AB4 5 ILE B 374 VAL B 378 1 O GLU B 376 N ALA B 257 SHEET 5 AB4 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 AB5 4 ARG B 297 ASP B 304 0 SHEET 2 AB5 4 ARG B 319 GLN B 327 -1 O THR B 320 N MET B 303 SHEET 3 AB5 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 AB5 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK SG CYS A 354 C06 KS9 A 501 1555 1555 1.82 LINK SG CYS B 354 C06 KS9 B 501 1555 1555 1.82 LINK NA NA A 506 O HOH A 621 1555 1555 2.95 CISPEP 1 MET A 157 PRO A 158 0 3.84 CISPEP 2 ASN A 193 PRO A 194 0 -0.29 CISPEP 3 MET B 157 PRO B 158 0 -1.13 CISPEP 4 ASN B 193 PRO B 194 0 3.56 CRYST1 61.756 94.772 75.745 90.00 92.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016193 0.000000 0.000820 0.00000 SCALE2 0.000000 0.010552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013219 0.00000