HEADER TRANSFERASE 03-JUN-22 8A2D TITLE EGFR KINASE DOMAIN (L858R/V948R) IN COMPLEX WITH 2-[4- TITLE 2 (DIFLUOROMETHYL)-6-[2-[4-[[4-(HYDROXYMETHYL)-1- TITLE 3 PIPERIDYL]METHYL]PHENYL]ETHYNYL]-7-METHYL-INDAZOL-2-YL]-2-SPIRO[6,7- TITLE 4 DIHYDROPYRROLO[1,2-C]IMIDAZOLE-5,1'-CYCLOPROPANE]-1-YL-N-THIAZOL-2- TITLE 5 YL-ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUGLSTATTER,A.EHLER REVDAT 3 31-JAN-24 8A2D 1 REMARK REVDAT 2 26-OCT-22 8A2D 1 JRNL REVDAT 1 19-OCT-22 8A2D 0 JRNL AUTH U.OBST-SANDER,A.RICCI,B.KUHN,T.FRIESS,P.KOLDEWEY, JRNL AUTH 2 A.KUGLSTATTER,D.HEWINGS,A.GOERGLER,S.STEINER,D.RUEHER, JRNL AUTH 3 M.P.IMHOFF,N.RASCHETTI,H.P.MARTY,A.DIETZIG,C.RYNN,A.EHLER, JRNL AUTH 4 D.BURGER,M.KORNACKER,J.P.SCHAFFLAND,F.HERTING,W.PAO, JRNL AUTH 5 J.R.BISCHOFF,B.MARTOGLIO,Y.ALICE NAGEL,G.JAESCHKE JRNL TITL DISCOVERY OF NOVEL ALLOSTERIC EGFR L858R INHIBITORS FOR THE JRNL TITL 2 TREATMENT OF NON-SMALL-CELL LUNG CANCER AS A SINGLE AGENT OR JRNL TITL 3 IN COMBINATION WITH OSIMERTINIB. JRNL REF J.MED.CHEM. V. 65 13052 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36178776 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00893 REMARK 2 REMARK 2 RESOLUTION. 1.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 90192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4722 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2355 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 31.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2446 ; 0.021 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2360 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3323 ; 2.278 ; 1.677 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5461 ; 1.540 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 6.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;34.572 ;21.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;14.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2653 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 523 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 701 A 1101 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2896 -7.0191 16.6752 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0206 REMARK 3 T33: 0.0120 T12: -0.0028 REMARK 3 T13: -0.0053 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.1490 L22: 0.0308 REMARK 3 L33: 0.1968 L12: -0.0581 REMARK 3 L13: 0.0891 L23: -0.0167 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.0072 S13: 0.0055 REMARK 3 S21: 0.0034 S22: 0.0051 S23: -0.0097 REMARK 3 S31: -0.0038 S32: -0.0076 S33: -0.0007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8A2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.110 REMARK 200 RESOLUTION RANGE LOW (A) : 65.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8A27 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG SMEAR HIGH, 0.1M MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.80950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.47550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.80950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.47550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 697 REMARK 465 SER A 698 REMARK 465 MET A 699 REMARK 465 ASN A 700 REMARK 465 LYS A 860 REMARK 465 LEU A 861 REMARK 465 LEU A 862 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 LYS A 875 REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 MET A 1007 REMARK 465 ASP A 1008 REMARK 465 ASP A 1009 REMARK 465 VAL A 1010 REMARK 465 VAL A 1011 REMARK 465 ASP A 1012 REMARK 465 ALA A 1013 REMARK 465 ASP A 1014 REMARK 465 GLU A 1015 REMARK 465 TYR A 1016 REMARK 465 GLY A 1022 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1239 O HOH A 1318 1.92 REMARK 500 O HOH A 1462 O HOH A 1486 2.07 REMARK 500 O HOH A 1422 O HOH A 1566 2.14 REMARK 500 O HOH A 1232 O HOH A 1531 2.14 REMARK 500 O HOH A 1456 O HOH A 1522 2.17 REMARK 500 O HOH A 1236 O HOH A 1555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 711 CD GLU A 711 OE2 0.071 REMARK 500 GLU A 762 CD GLU A 762 OE2 0.074 REMARK 500 GLU A 865 CD GLU A 865 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 836 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TYR A 915 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR A 915 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 MET A 945 CG - SD - CE ANGL. DEV. = -13.6 DEGREES REMARK 500 MET A 947 CG - SD - CE ANGL. DEV. = -31.1 DEGREES REMARK 500 MET A 952 CB - CG - SD ANGL. DEV. = 18.2 DEGREES REMARK 500 MET A 952 CG - SD - CE ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 782 47.55 -88.67 REMARK 500 ARG A 836 -5.69 77.64 REMARK 500 ASP A 837 45.64 -147.90 REMARK 500 ASP A 855 75.85 45.57 REMARK 500 ASP A 984 77.99 -104.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1585 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1586 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1587 DISTANCE = 6.43 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8A27 RELATED DB: PDB REMARK 900 RELATED ID: 8A2A RELATED DB: PDB REMARK 900 RELATED ID: 8A2B RELATED DB: PDB DBREF 8A2D A 700 1022 UNP P00533 EGFR_HUMAN 700 1022 SEQADV 8A2D GLY A 697 UNP P00533 EXPRESSION TAG SEQADV 8A2D SER A 698 UNP P00533 EXPRESSION TAG SEQADV 8A2D MET A 699 UNP P00533 EXPRESSION TAG SEQADV 8A2D ARG A 858 UNP P00533 LEU 858 ENGINEERED MUTATION SEQADV 8A2D ARG A 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQRES 1 A 326 GLY SER MET ASN GLN ALA LEU LEU ARG ILE LEU LYS GLU SEQRES 2 A 326 THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER GLY ALA SEQRES 3 A 326 PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO GLU GLY SEQRES 4 A 326 GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU LEU ARG SEQRES 5 A 326 GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE LEU ASP SEQRES 6 A 326 GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO HIS VAL SEQRES 7 A 326 CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR VAL GLN SEQRES 8 A 326 LEU ILE THR GLN LEU MET PRO PHE GLY CYS LEU LEU ASP SEQRES 9 A 326 TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER GLN TYR SEQRES 10 A 326 LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY MET ASN SEQRES 11 A 326 TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP LEU ALA SEQRES 12 A 326 ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS VAL LYS SEQRES 13 A 326 ILE THR ASP PHE GLY ARG ALA LYS LEU LEU GLY ALA GLU SEQRES 14 A 326 GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL PRO ILE SEQRES 15 A 326 LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG ILE TYR SEQRES 16 A 326 THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL THR VAL SEQRES 17 A 326 TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR ASP GLY SEQRES 18 A 326 ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU LYS GLY SEQRES 19 A 326 GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE ASP VAL SEQRES 20 A 326 TYR MET ILE MET ARG LYS CYS TRP MET ILE ASP ALA ASP SEQRES 21 A 326 SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU PHE SER SEQRES 22 A 326 LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL ILE GLN SEQRES 23 A 326 GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR ASP SER SEQRES 24 A 326 ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP MET ASP SEQRES 25 A 326 ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO GLN GLN SEQRES 26 A 326 GLY HET EDO A1101 4 HET MES A1102 12 HET KXY A1103 49 HETNAM EDO 1,2-ETHANEDIOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM KXY (2R)-2-[4-[BIS(FLUORANYL)METHYL]-6-[2-[4-[[4- HETNAM 2 KXY (HYDROXYMETHYL)PIPERIDIN-1-YL]METHYL]PHENYL]ETHYNYL]- HETNAM 3 KXY 7-METHYL-INDAZOL-2-YL]-2-SPIRO[6,7-DIHYDROPYRROLO[1,2- HETNAM 4 KXY C]IMIDAZOLE-5,1'-CYCLOPROPANE]-1-YL-N-(1,3-THIAZOL-2- HETNAM 5 KXY YL)ETHANAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 MES C6 H13 N O4 S FORMUL 4 KXY C37 H37 F2 N7 O2 S FORMUL 5 HOH *387(H2 O) HELIX 1 AA1 LYS A 708 THR A 710 5 3 HELIX 2 AA2 SER A 752 SER A 768 1 17 HELIX 3 AA3 CYS A 797 HIS A 805 1 9 HELIX 4 AA4 LYS A 806 ILE A 809 5 4 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 GLU A 865 TYR A 869 5 5 HELIX 8 AA8 PRO A 877 MET A 881 5 5 HELIX 9 AA9 ALA A 882 ARG A 889 1 8 HELIX 10 AB1 THR A 892 THR A 909 1 18 HELIX 11 AB2 PRO A 919 SER A 921 5 3 HELIX 12 AB3 GLU A 922 LYS A 929 1 8 HELIX 13 AB4 THR A 940 TRP A 951 1 12 HELIX 14 AB5 ASP A 954 ARG A 958 5 5 HELIX 15 AB6 LYS A 960 ARG A 973 1 14 HELIX 16 AB7 ASP A 974 TYR A 978 5 5 SHEET 1 AA1 6 ARG A 705 ILE A 706 0 SHEET 2 AA1 6 LEU A 777 CYS A 781 1 O LEU A 778 N ARG A 705 SHEET 3 AA1 6 GLN A 787 GLN A 791 -1 O GLN A 787 N CYS A 781 SHEET 4 AA1 6 ILE A 740 LEU A 747 -1 N LYS A 745 O LEU A 788 SHEET 5 AA1 6 GLY A 724 TRP A 731 -1 N TRP A 731 O ILE A 740 SHEET 6 AA1 6 PHE A 712 SER A 720 -1 N LEU A 718 O VAL A 726 SHEET 1 AA2 2 VAL A 843 THR A 847 0 SHEET 2 AA2 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 CRYST1 119.619 34.951 83.934 90.00 128.81 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008360 0.000000 0.006724 0.00000 SCALE2 0.000000 0.028611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015290 0.00000