HEADER SIGNALING PROTEIN 09-JUN-22 8A3U TITLE CRYSTAL STRUCTURE OF A CHIMERIC LOV-HISTIDINE KINASE SB2F1 TITLE 2 (SYMMETRICAL VARIANT, TRIGONAL FORM WITH SHORT C-AXIS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SENSORY BOX PROTEIN,SENSOR PROTEIN FIXL; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.13.3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: HIS-TAG: 1-MGSSHHHHHHSSGLVPRGSH-20; BELONGS TO Q88JB0: COMPND 7 21 (OR 1 PDB-FILE)-(MSE)INA...YYIGIQRDVT-140 (OR 120); BELONGS TO COMPND 8 P23222:141 (OR 121 PDB-FILE)-EHQQTQ...AADEN-388 (OR 368); UNP:Q88JB0 COMPND 9 (UNP-NUMBERING) 4-(MSE)INA...QRDVT-123; UNP:P23222 (UNP-NUMBERING) COMPND 10 258 TO C-TERM. EXPRESSION SYSTEM: BECAUSE OF SEMET: E.COLI B834 COMPND 11 (DE3). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA KT2440, BRADYRHIZOBIUM SOURCE 3 DIAZOEFFICIENS USDA 110; SOURCE 4 ORGANISM_TAXID: 160488, 224911; SOURCE 5 STRAIN: ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440, SOURCE 6 JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110; SOURCE 7 GENE: PP_2739, FIXL, BLL2760; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: B834 KEYWDS LOV DOMAIN, PAS DOMAIN, PHOTOCYCLE, DIMERIZATION, SIGNALING BLUE KEYWDS 2 LIGHT PHOTORECEPTOR, SENSORY HISTIDINE KINASE, CHIMERIC, DE NOVO KEYWDS 3 PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.ARINKIN,R.BATRA-SAFFERLING,J.GRANZIN REVDAT 1 20-DEC-23 8A3U 0 JRNL AUTH V.ARINKIN,R.BATRA-SAFFERLING,J.GRANZIN,U.KRAUSS JRNL TITL CRYSTAL STRUCTURE OF A CHIMERIC LOV-HISTIDINE KINASE SB2F1 JRNL TITL 2 (SYMMETRICAL VARIANT, TRIGONAL FORM WITH SHORT C-AXIS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC6_4061 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 58.6 REMARK 3 NUMBER OF REFLECTIONS : 13861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6500 - 3.9800 1.00 8704 403 0.1966 0.2373 REMARK 3 2 3.9800 - 3.1600 0.84 7311 376 0.2632 0.3215 REMARK 3 3 3.1600 - 2.7600 0.57 4964 215 0.3292 0.3931 REMARK 3 4 2.7600 - 2.5100 0.38 3250 178 0.3764 0.3793 REMARK 3 5 2.5100 - 2.3300 0.14 1235 74 0.3868 0.4064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.434 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2935 REMARK 3 ANGLE : 0.819 3979 REMARK 3 CHIRALITY : 0.063 445 REMARK 3 PLANARITY : 0.007 526 REMARK 3 DIHEDRAL : 13.228 1123 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5366 9.2693 3.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.5981 REMARK 3 T33: 0.4800 T12: 0.0685 REMARK 3 T13: 0.0996 T23: 0.0780 REMARK 3 L TENSOR REMARK 3 L11: 4.7348 L22: 4.9587 REMARK 3 L33: 6.0971 L12: 0.6482 REMARK 3 L13: -0.0526 L23: -1.9311 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: 0.1120 S13: 0.4645 REMARK 3 S21: 0.0096 S22: 0.2456 S23: 0.4164 REMARK 3 S31: -0.5551 S32: -1.3268 S33: -0.3168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -87.0306 -1.7834 3.0599 REMARK 3 T TENSOR REMARK 3 T11: 0.4174 T22: 1.6627 REMARK 3 T33: 1.1038 T12: -0.1214 REMARK 3 T13: -0.0542 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 2.0222 L22: -0.0524 REMARK 3 L33: 0.6039 L12: 2.3086 REMARK 3 L13: -0.8417 L23: -0.2554 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: -0.7676 S13: 0.1039 REMARK 3 S21: 0.1417 S22: -0.3666 S23: -0.1967 REMARK 3 S31: -0.3369 S32: 1.0753 S33: 0.3145 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.8427 -13.0445 1.6404 REMARK 3 T TENSOR REMARK 3 T11: 0.9419 T22: 1.8984 REMARK 3 T33: 1.4894 T12: 0.0633 REMARK 3 T13: 0.0116 T23: -0.0944 REMARK 3 L TENSOR REMARK 3 L11: 7.6756 L22: 1.6120 REMARK 3 L33: 1.5131 L12: -2.1224 REMARK 3 L13: -1.0742 L23: 0.9125 REMARK 3 S TENSOR REMARK 3 S11: 0.1482 S12: 1.7572 S13: -1.1072 REMARK 3 S21: -0.2194 S22: -0.3010 S23: -0.4983 REMARK 3 S31: 0.4851 S32: 0.9886 S33: 0.1444 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.5417 -15.7029 10.5283 REMARK 3 T TENSOR REMARK 3 T11: 1.2907 T22: 2.1270 REMARK 3 T33: 2.3731 T12: 0.3198 REMARK 3 T13: -0.0721 T23: 0.0879 REMARK 3 L TENSOR REMARK 3 L11: 3.2640 L22: 2.0004 REMARK 3 L33: 5.6359 L12: 1.2099 REMARK 3 L13: 0.0099 L23: -2.4274 REMARK 3 S TENSOR REMARK 3 S11: -0.1995 S12: 0.5735 S13: -0.6736 REMARK 3 S21: 0.2447 S22: 0.2325 S23: -0.4652 REMARK 3 S31: 0.3039 S32: 0.1462 S33: -0.0346 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4318 15.0945 2.9887 REMARK 3 T TENSOR REMARK 3 T11: 0.4648 T22: 1.0070 REMARK 3 T33: 0.5831 T12: 0.3474 REMARK 3 T13: 0.1918 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.0024 L22: 5.9318 REMARK 3 L33: 2.0020 L12: 5.4857 REMARK 3 L13: 2.1633 L23: 6.8378 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: 0.1204 S13: 0.7014 REMARK 3 S21: -0.7145 S22: -0.2203 S23: 0.8770 REMARK 3 S31: -1.1166 S32: -1.4192 S33: 0.1565 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REFINEMENT WAS PERFORMED AGAINST REMARK 3 F(+) AND F(-). THE NUMBER "UNIQUE REFLECTIONS" GIVEN ABOVE REMARK 3 REFERS TO THE "NON-ANOMALOUS" REFLECTIONS (13861 REFLECTIONS). REMARK 3 HOWEVER, SEPARATING THE REFLECTIONS ON F(+) AND F(-), THE PHENIX REMARK 3 PROGRAM GIVES A NUMBER OF 26710 REFLECTIONS FOR THE REFINEMENT. REMARK 3 THE STATISTICS (NUMBER OF REFLECTIONS) IN RESOLUTION SHELLS ALSO REMARK 3 REFERS TO F(+) AND F(-). ATTENTION, THESE ARE VERY STRONG REMARK 3 ANISOTROPIC DATA, SO THAT THE SPHERICAL COMPLETENESS IS REMARK 3 RELATIVELY LOW. REMARK 4 REMARK 4 8A3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292122087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 45.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 58.6 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 14.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8K, 0.1M CITRATE, 0.2M NACL, REMARK 280 0.1M AMMONIUM BROMIDE, 1MM ATP, 2MM MGCL2, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.89733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.44867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.44867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.89733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 16.44867 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 PRO A 363 REMARK 465 ALA A 364 REMARK 465 ALA A 365 REMARK 465 ASP A 366 REMARK 465 GLU A 367 REMARK 465 ASN A 368 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 70 CD NE CZ NH1 NH2 REMARK 480 GLU A 105 CG CD OE1 OE2 REMARK 480 GLN A 130 CG CD OE1 NE2 REMARK 480 GLN A 133 CG CD OE1 NE2 REMARK 480 LYS A 217 CB CG CD CE NZ REMARK 480 ARG A 218 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 224 CG CD CE NZ REMARK 480 ARG A 238 CD NE CZ NH1 NH2 REMARK 480 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 345 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 311 35.94 -98.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 8A3U A 1 120 UNP Q88JB0 Q88JB0_PSEPK 4 123 DBREF 8A3U A 121 368 UNP P23222 FIXL_BRADU 258 505 SEQADV 8A3U MSE A -19 UNP Q88JB0 INITIATING METHIONINE SEQADV 8A3U GLY A -18 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U SER A -17 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U SER A -16 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U HIS A -15 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U HIS A -14 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U HIS A -13 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U HIS A -12 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U HIS A -11 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U HIS A -10 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U SER A -9 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U SER A -8 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U GLY A -7 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U LEU A -6 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U VAL A -5 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U PRO A -4 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U ARG A -3 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U GLY A -2 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U SER A -1 UNP Q88JB0 EXPRESSION TAG SEQADV 8A3U HIS A 0 UNP Q88JB0 EXPRESSION TAG SEQRES 1 A 388 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 388 LEU VAL PRO ARG GLY SER HIS MSE ILE ASN ALA LYS LEU SEQRES 3 A 388 LEU GLN LEU MSE VAL GLU HIS SER ASN ASP GLY ILE VAL SEQRES 4 A 388 VAL ALA GLU GLN GLU GLY ASN GLU SER ILE LEU ILE TYR SEQRES 5 A 388 VAL ASN PRO ALA PHE GLU ARG LEU THR GLY TYR CYS ALA SEQRES 6 A 388 ASP ASP ILE LEU TYR GLN ASP CYS ARG PHE LEU GLN GLY SEQRES 7 A 388 GLU ASP HIS ASP GLN PRO GLY ILE ALA ILE ILE ARG GLU SEQRES 8 A 388 ALA ILE ARG GLU GLY ARG PRO CYS CYS GLN VAL LEU ARG SEQRES 9 A 388 ASN TYR ARG LYS ASP GLY SER LEU PHE TRP ASN GLU LEU SEQRES 10 A 388 SER ILE THR PRO VAL HIS ASN GLU ALA ASP GLN LEU THR SEQRES 11 A 388 TYR TYR ILE GLY ILE GLN ARG ASP VAL THR GLU HIS GLN SEQRES 12 A 388 GLN THR GLN ALA ARG LEU GLN GLU LEU GLN SER GLU LEU SEQRES 13 A 388 VAL HIS VAL SER ARG LEU SER ALA MSE GLY GLU MSE ALA SEQRES 14 A 388 SER ALA LEU ALA HIS GLU LEU ASN GLN PRO LEU ALA ALA SEQRES 15 A 388 ILE SER ASN TYR MSE LYS GLY SER ARG ARG LEU LEU ALA SEQRES 16 A 388 GLY SER SER ASP PRO ASN THR PRO LYS VAL GLU SER ALA SEQRES 17 A 388 LEU ASP ARG ALA ALA GLU GLN ALA LEU ARG ALA GLY GLN SEQRES 18 A 388 ILE ILE ARG ARG LEU ARG ASP PHE VAL ALA ARG GLY GLU SEQRES 19 A 388 SER GLU LYS ARG VAL GLU SER LEU SER LYS LEU ILE GLU SEQRES 20 A 388 GLU ALA GLY ALA LEU GLY LEU ALA GLY ALA ARG GLU GLN SEQRES 21 A 388 ASN VAL GLN LEU ARG PHE SER LEU ASP PRO GLY ALA ASP SEQRES 22 A 388 LEU VAL LEU ALA ASP ARG VAL GLN ILE GLN GLN VAL LEU SEQRES 23 A 388 VAL ASN LEU PHE ARG ASN ALA LEU GLU ALA MSE ALA GLN SEQRES 24 A 388 SER GLN ARG ARG GLU LEU VAL VAL THR ASN THR PRO ALA SEQRES 25 A 388 ALA ASP ASP MSE ILE GLU VAL GLU VAL SER ASP THR GLY SEQRES 26 A 388 SER GLY PHE GLN ASP ASP VAL ILE PRO ASN LEU PHE GLN SEQRES 27 A 388 THR PHE PHE THR THR LYS ASP THR GLY MSE GLY VAL GLY SEQRES 28 A 388 LEU SER ILE SER ARG SER ILE ILE GLU ALA HIS GLY GLY SEQRES 29 A 388 ARG MSE TRP ALA GLU SER ASN ALA SER GLY GLY ALA THR SEQRES 30 A 388 PHE ARG PHE THR LEU PRO ALA ALA ASP GLU ASN MODRES 8A3U MSE A 1 MET MODIFIED RESIDUE MODRES 8A3U MSE A 10 MET MODIFIED RESIDUE MODRES 8A3U MSE A 145 MET MODIFIED RESIDUE MODRES 8A3U MSE A 148 MET MODIFIED RESIDUE MODRES 8A3U MSE A 167 MET MODIFIED RESIDUE MODRES 8A3U MSE A 277 MET MODIFIED RESIDUE MODRES 8A3U MSE A 296 MET MODIFIED RESIDUE MODRES 8A3U MSE A 328 MET MODIFIED RESIDUE MODRES 8A3U MSE A 346 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 10 8 HET MSE A 145 8 HET MSE A 148 8 HET MSE A 167 8 HET MSE A 277 8 HET MSE A 296 8 HET MSE A 328 8 HET MSE A 346 8 HET ATP A 401 31 HET FMN A 402 31 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 FMN C17 H21 N4 O9 P HELIX 1 AA1 ASN A 3 SER A 14 1 12 HELIX 2 AA2 ASN A 34 GLY A 42 1 9 HELIX 3 AA3 CYS A 44 LEU A 49 1 6 HELIX 4 AA4 ASP A 52 GLY A 58 5 7 HELIX 5 AA5 GLN A 63 GLY A 76 1 14 HELIX 6 AA6 VAL A 119 GLY A 176 1 58 HELIX 7 AA7 ASN A 181 ALA A 211 1 31 HELIX 8 AA8 LEU A 222 LEU A 234 1 13 HELIX 9 AA9 GLY A 236 ASN A 241 1 6 HELIX 10 AB1 ASP A 249 ALA A 252 5 4 HELIX 11 AB2 ARG A 259 MSE A 277 1 19 HELIX 12 AB3 VAL A 312 LEU A 316 5 5 HELIX 13 AB4 VAL A 330 HIS A 342 1 13 SHEET 1 AA1 5 GLU A 27 VAL A 33 0 SHEET 2 AA1 5 GLY A 17 GLU A 24 -1 N VAL A 20 O ILE A 31 SHEET 3 AA1 5 LEU A 109 ASP A 118 -1 O GLN A 116 N GLY A 17 SHEET 4 AA1 5 LEU A 92 ASN A 104 -1 N SER A 98 O ILE A 115 SHEET 5 AA1 5 CYS A 79 TYR A 86 -1 N CYS A 79 O ILE A 99 SHEET 1 AA2 2 ARG A 218 SER A 221 0 SHEET 2 AA2 2 LEU A 254 ALA A 257 -1 O VAL A 255 N GLU A 220 SHEET 1 AA3 5 GLN A 243 SER A 247 0 SHEET 2 AA3 5 GLU A 284 ALA A 292 1 O LEU A 285 N GLN A 243 SHEET 3 AA3 5 MSE A 296 SER A 302 -1 O GLU A 300 N THR A 288 SHEET 4 AA3 5 ALA A 356 THR A 361 -1 O PHE A 360 N VAL A 299 SHEET 5 AA3 5 MSE A 346 SER A 350 -1 N GLU A 349 O THR A 357 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ILE A 2 1555 1555 1.35 LINK C LEU A 9 N MSE A 10 1555 1555 1.35 LINK C MSE A 10 N VAL A 11 1555 1555 1.32 LINK C ALA A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N GLY A 146 1555 1555 1.34 LINK C GLU A 147 N MSE A 148 1555 1555 1.34 LINK C MSE A 148 N ALA A 149 1555 1555 1.34 LINK C TYR A 166 N MSE A 167 1555 1555 1.32 LINK C MSE A 167 N LYS A 168 1555 1555 1.34 LINK C ALA A 276 N MSE A 277 1555 1555 1.33 LINK C MSE A 277 N ALA A 278 1555 1555 1.34 LINK C ASP A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N ILE A 297 1555 1555 1.33 LINK C GLY A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N GLY A 329 1555 1555 1.34 LINK C ARG A 345 N MSE A 346 1555 1555 1.33 LINK C MSE A 346 N TRP A 347 1555 1555 1.33 CRYST1 138.716 138.716 49.346 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007209 0.004162 0.000000 0.00000 SCALE2 0.000000 0.008324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020265 0.00000