HEADER ENDOCYTOSIS 10-JUN-22 8A4A TITLE STRUCTURE OF HUMAN REP15 IN COMPLEX WITH BOVINE RAB3C. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB15 EFFECTOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RAS-RELATED PROTEIN RAB-3C; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: SMG P25C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REP15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 10 ORGANISM_COMMON: CATTLE; SOURCE 11 ORGANISM_TAXID: 9913; SOURCE 12 GENE: RAB3C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAB GTPASE, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.RAI,I.R.VETTER,R.S.GOODY REVDAT 2 31-JAN-24 8A4A 1 REMARK REVDAT 1 10-AUG-22 8A4A 0 JRNL AUTH A.RAI,A.K.SINGH,N.BLEIMLING,G.POSERN,I.R.VETTER,R.S.GOODY JRNL TITL REP15 INTERACTS WITH SEVERAL RAB GTPASES AND HAS A DISTINCT JRNL TITL 2 FOLD FOR A RAB EFFECTOR. JRNL REF NAT COMMUN V. 13 4262 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35871249 JRNL DOI 10.1038/S41467-022-31831-1 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 18801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9700 - 4.8200 1.00 2696 143 0.1951 0.2451 REMARK 3 2 4.8200 - 3.8300 0.99 2579 136 0.1715 0.2007 REMARK 3 3 3.8200 - 3.3400 0.98 2510 133 0.2163 0.3017 REMARK 3 4 3.3400 - 3.0400 1.00 2536 134 0.2135 0.2476 REMARK 3 5 3.0400 - 2.8200 1.00 2540 134 0.2498 0.3185 REMARK 3 6 2.8200 - 2.6500 1.00 2495 131 0.2661 0.2451 REMARK 3 7 2.6500 - 2.5200 0.99 2504 130 0.3110 0.3698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4480 37.7537 80.9012 REMARK 3 T TENSOR REMARK 3 T11: 0.7899 T22: 0.6011 REMARK 3 T33: 0.3859 T12: 0.0714 REMARK 3 T13: -0.0990 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.9269 L22: 0.5752 REMARK 3 L33: 1.2413 L12: 0.6138 REMARK 3 L13: -0.2597 L23: -0.0285 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: -0.9583 S13: -0.3705 REMARK 3 S21: 0.2558 S22: 0.6199 S23: -0.1264 REMARK 3 S31: 0.3478 S32: 0.0159 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8418 58.8546 69.2761 REMARK 3 T TENSOR REMARK 3 T11: 0.6761 T22: 0.6258 REMARK 3 T33: 0.5936 T12: -0.0555 REMARK 3 T13: -0.0394 T23: 0.0964 REMARK 3 L TENSOR REMARK 3 L11: 0.0017 L22: 0.1561 REMARK 3 L33: 0.0404 L12: -0.0258 REMARK 3 L13: 0.0090 L23: 0.0695 REMARK 3 S TENSOR REMARK 3 S11: -0.3165 S12: 0.2944 S13: -0.3531 REMARK 3 S21: -0.4217 S22: 0.3025 S23: 0.3237 REMARK 3 S31: -0.1357 S32: 0.1609 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8907 39.3674 68.9618 REMARK 3 T TENSOR REMARK 3 T11: 0.4310 T22: 0.4275 REMARK 3 T33: 0.4711 T12: 0.0006 REMARK 3 T13: -0.0914 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.9938 L22: 0.8627 REMARK 3 L33: 1.9958 L12: 0.2538 REMARK 3 L13: -1.3892 L23: -0.0984 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.1279 S13: -0.0072 REMARK 3 S21: 0.1199 S22: 0.0594 S23: -0.3795 REMARK 3 S31: -0.0587 S32: 0.1684 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3749 43.7582 50.2589 REMARK 3 T TENSOR REMARK 3 T11: 0.7388 T22: 0.8525 REMARK 3 T33: 0.9837 T12: -0.1584 REMARK 3 T13: -0.0350 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 0.7906 L22: 0.0288 REMARK 3 L33: 0.2741 L12: -0.2347 REMARK 3 L13: 0.4498 L23: -0.1208 REMARK 3 S TENSOR REMARK 3 S11: -0.1159 S12: 0.6335 S13: 0.7253 REMARK 3 S21: -0.4495 S22: 0.5817 S23: -0.4255 REMARK 3 S31: 0.6646 S32: 0.1067 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2117 35.1244 64.4221 REMARK 3 T TENSOR REMARK 3 T11: 0.4797 T22: 0.6292 REMARK 3 T33: 0.4469 T12: -0.0364 REMARK 3 T13: -0.0207 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.1133 L22: 1.8162 REMARK 3 L33: 0.9329 L12: 1.1623 REMARK 3 L13: 0.2995 L23: -0.3354 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.2624 S13: -0.3513 REMARK 3 S21: 0.0646 S22: -0.0753 S23: 0.2828 REMARK 3 S31: 0.3282 S32: -0.4493 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4807 29.8659 69.6756 REMARK 3 T TENSOR REMARK 3 T11: 0.6230 T22: 0.7794 REMARK 3 T33: 0.6719 T12: -0.0749 REMARK 3 T13: 0.0052 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 1.4645 L22: 1.5718 REMARK 3 L33: 1.0942 L12: 0.8976 REMARK 3 L13: -1.0733 L23: -0.2388 REMARK 3 S TENSOR REMARK 3 S11: 0.1287 S12: 0.1826 S13: -0.2139 REMARK 3 S21: 0.4572 S22: -0.1006 S23: 0.6261 REMARK 3 S31: 0.2736 S32: -0.9055 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5435 24.8327 72.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.7657 T22: 0.7270 REMARK 3 T33: 0.7134 T12: -0.0812 REMARK 3 T13: -0.0013 T23: 0.0779 REMARK 3 L TENSOR REMARK 3 L11: 0.3474 L22: 0.1636 REMARK 3 L33: 0.2531 L12: 0.1219 REMARK 3 L13: -0.2929 L23: -0.1872 REMARK 3 S TENSOR REMARK 3 S11: 0.3684 S12: 0.0810 S13: -0.6435 REMARK 3 S21: 0.3380 S22: -0.3087 S23: -0.3541 REMARK 3 S31: 0.3104 S32: -0.1197 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8401 46.4003 45.9733 REMARK 3 T TENSOR REMARK 3 T11: 0.4360 T22: 0.4499 REMARK 3 T33: 0.5128 T12: 0.0578 REMARK 3 T13: -0.0185 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.6505 L22: 0.2996 REMARK 3 L33: 0.8464 L12: 0.4741 REMARK 3 L13: -0.8900 L23: 0.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: 0.1645 S13: 0.4119 REMARK 3 S21: 0.1069 S22: -0.0394 S23: 0.0561 REMARK 3 S31: -0.2362 S32: -0.2594 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8947 30.5144 53.3885 REMARK 3 T TENSOR REMARK 3 T11: 0.5834 T22: 0.5251 REMARK 3 T33: 0.7268 T12: -0.0303 REMARK 3 T13: 0.0239 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.0797 L22: 0.3740 REMARK 3 L33: 0.2674 L12: 0.0667 REMARK 3 L13: -0.1470 L23: -0.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.3268 S12: 0.0899 S13: -0.2232 REMARK 3 S21: 0.2204 S22: -0.1672 S23: -0.4910 REMARK 3 S31: 0.1474 S32: 0.6260 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4729 31.5893 45.2907 REMARK 3 T TENSOR REMARK 3 T11: 0.5016 T22: 0.4516 REMARK 3 T33: 0.6718 T12: -0.0161 REMARK 3 T13: 0.0211 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 0.7010 L22: 0.9360 REMARK 3 L33: 0.7784 L12: 0.4082 REMARK 3 L13: -0.0509 L23: 0.7083 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: -0.1358 S13: -0.6123 REMARK 3 S21: 0.2131 S22: -0.0184 S23: -0.0189 REMARK 3 S31: 0.2985 S32: -0.0791 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.6693 38.1301 43.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.4607 T22: 0.4616 REMARK 3 T33: 0.6487 T12: 0.0224 REMARK 3 T13: 0.0132 T23: -0.0770 REMARK 3 L TENSOR REMARK 3 L11: 1.9047 L22: 2.2967 REMARK 3 L33: 2.3479 L12: -1.6166 REMARK 3 L13: -0.5925 L23: -0.6221 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: 0.5133 S13: -0.0147 REMARK 3 S21: -0.1368 S22: -0.0158 S23: -0.4478 REMARK 3 S31: -0.0362 S32: 0.2533 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.2385 45.0244 32.9893 REMARK 3 T TENSOR REMARK 3 T11: 0.6640 T22: 0.7659 REMARK 3 T33: 0.5416 T12: 0.0025 REMARK 3 T13: 0.0017 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.4799 L22: 0.2173 REMARK 3 L33: 0.2506 L12: 0.0578 REMARK 3 L13: -0.3275 L23: 0.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: 0.7390 S13: 0.7213 REMARK 3 S21: -0.3241 S22: -0.1122 S23: -0.0362 REMARK 3 S31: -0.3284 S32: 0.3158 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292118690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977930 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18879 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 45.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10950 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0 10% W/V PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.14500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.39750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 86.01350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.14500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.39750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.01350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.14500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.39750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.01350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.14500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.39750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.01350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 LYS A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 SER A 117 REMARK 465 PRO A 118 REMARK 465 PRO A 119 REMARK 465 PRO A 120 REMARK 465 VAL A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 PRO A 125 REMARK 465 CYS A 126 REMARK 465 ASP A 127 REMARK 465 LEU A 128 REMARK 465 SER A 129 REMARK 465 ASN A 130 REMARK 465 LEU A 236 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 ASP B 14 REMARK 465 ALA B 15 REMARK 465 ARG B 16 REMARK 465 TYR B 17 REMARK 465 GLY B 18 REMARK 465 GLN B 19 REMARK 465 LYS B 20 REMARK 465 ASP B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 ASP B 24 REMARK 465 GLN B 25 REMARK 465 SER B 198 REMARK 465 LEU B 199 REMARK 465 GLU B 200 REMARK 465 THR B 201 REMARK 465 ASP B 202 REMARK 465 PRO B 203 REMARK 465 ALA B 204 REMARK 465 ILE B 205 REMARK 465 THR B 206 REMARK 465 ALA B 207 REMARK 465 ALA B 208 REMARK 465 LYS B 209 REMARK 465 GLN B 210 REMARK 465 ASN B 211 REMARK 465 THR B 212 REMARK 465 ARG B 213 REMARK 465 LEU B 214 REMARK 465 LYS B 215 REMARK 465 GLU B 216 REMARK 465 THR B 217 REMARK 465 PRO B 218 REMARK 465 PRO B 219 REMARK 465 PRO B 220 REMARK 465 PRO B 221 REMARK 465 HIS B 222 REMARK 465 PRO B 223 REMARK 465 ASN B 224 REMARK 465 CYS B 225 REMARK 465 GLY B 226 REMARK 465 CYS B 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 426 O HOH B 428 8455 2.17 REMARK 500 OH TYR B 131 OE2 GLU B 156 8455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 50.43 -93.11 REMARK 500 PRO A 45 44.39 -74.96 REMARK 500 SER A 46 22.58 46.25 REMARK 500 SER A 46 -59.80 -122.41 REMARK 500 LYS A 47 57.56 -96.70 REMARK 500 LEU A 48 49.91 -79.11 REMARK 500 GLN A 114 -61.39 -102.07 REMARK 500 SER A 133 -12.18 70.66 REMARK 500 SER A 139 52.60 -91.17 REMARK 500 LYS A 222 86.30 -69.99 REMARK 500 ARG A 226 54.18 -102.60 REMARK 500 GLU A 227 -34.51 -131.15 REMARK 500 GLU B 76 -6.65 73.66 REMARK 500 MET B 195 -7.61 69.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 44 OG1 REMARK 620 2 THR B 62 OG1 77.9 REMARK 620 3 GNP B 301 O1G 173.7 102.9 REMARK 620 4 GNP B 301 O2B 85.2 163.0 94.1 REMARK 620 5 HOH B 404 O 79.0 92.3 94.7 86.5 REMARK 620 6 HOH B 411 O 84.3 93.7 101.9 82.4 160.6 REMARK 620 N 1 2 3 4 5 DBREF 8A4A A 1 236 UNP Q6BDI9 REP15_HUMAN 1 236 DBREF 8A4A B 10 227 UNP P10949 RAB3C_BOVIN 10 227 SEQADV 8A4A GLY A -1 UNP Q6BDI9 EXPRESSION TAG SEQADV 8A4A HIS A 0 UNP Q6BDI9 EXPRESSION TAG SEQADV 8A4A ASP A 101 UNP Q6BDI9 ASN 101 VARIANT SEQADV 8A4A MET B -1 UNP P10949 INITIATING METHIONINE SEQADV 8A4A ALA B 0 UNP P10949 EXPRESSION TAG SEQADV 8A4A HIS B 1 UNP P10949 EXPRESSION TAG SEQADV 8A4A HIS B 2 UNP P10949 EXPRESSION TAG SEQADV 8A4A HIS B 3 UNP P10949 EXPRESSION TAG SEQADV 8A4A HIS B 4 UNP P10949 EXPRESSION TAG SEQADV 8A4A HIS B 5 UNP P10949 EXPRESSION TAG SEQADV 8A4A HIS B 6 UNP P10949 EXPRESSION TAG SEQADV 8A4A SER B 7 UNP P10949 EXPRESSION TAG SEQADV 8A4A SER B 8 UNP P10949 EXPRESSION TAG SEQADV 8A4A GLY B 9 UNP P10949 EXPRESSION TAG SEQADV 8A4A HIS B 222 UNP P10949 GLN 222 ENGINEERED MUTATION SEQRES 1 A 238 GLY HIS MET GLY GLN LYS ALA SER GLN GLN LEU ALA LEU SEQRES 2 A 238 LYS ASP SER LYS GLU VAL PRO VAL VAL CYS GLU VAL VAL SEQRES 3 A 238 SER GLU ALA ILE VAL HIS ALA ALA GLN LYS LEU LYS GLU SEQRES 4 A 238 TYR LEU GLY PHE GLU TYR PRO PRO SER LYS LEU CYS PRO SEQRES 5 A 238 ALA ALA ASN THR LEU ASN GLU ILE PHE LEU ILE HIS PHE SEQRES 6 A 238 ILE THR PHE CYS GLN GLU LYS GLY VAL ASP GLU TRP LEU SEQRES 7 A 238 THR THR THR LYS MET THR LYS HIS GLN ALA PHE LEU PHE SEQRES 8 A 238 GLY ALA ASP TRP ILE TRP THR PHE TRP GLY SER ASP LYS SEQRES 9 A 238 GLN ILE LYS LEU GLN LEU ALA VAL GLN THR LEU GLN MET SEQRES 10 A 238 SER SER PRO PRO PRO VAL GLU SER LYS PRO CYS ASP LEU SEQRES 11 A 238 SER ASN PRO GLU SER ARG VAL GLU GLU SER SER TRP LYS SEQRES 12 A 238 LYS SER ARG PHE ASP LYS LEU GLU GLU PHE CYS ASN LEU SEQRES 13 A 238 ILE GLY GLU ASP CYS LEU GLY LEU PHE ILE ILE PHE GLY SEQRES 14 A 238 MET PRO GLY LYS PRO LYS ASP ILE ARG GLY VAL VAL LEU SEQRES 15 A 238 ASP SER VAL LYS SER GLN MET VAL ARG SER HIS LEU PRO SEQRES 16 A 238 GLY GLY LYS ALA VAL ALA GLN PHE VAL LEU GLU THR GLU SEQRES 17 A 238 ASP CYS VAL PHE ILE LYS GLU LEU LEU ARG ASN CYS LEU SEQRES 18 A 238 SER LYS LYS ASP GLY LEU ARG GLU VAL GLY LYS VAL TYR SEQRES 19 A 238 ILE SER ILE LEU SEQRES 1 B 229 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY ALA SER SEQRES 2 B 229 ALA GLN ASP ALA ARG TYR GLY GLN LYS ASP SER SER ASP SEQRES 3 B 229 GLN ASN PHE ASP TYR MET PHE LYS LEU LEU ILE ILE GLY SEQRES 4 B 229 ASN SER SER VAL GLY LYS THR SER PHE LEU PHE ARG TYR SEQRES 5 B 229 ALA ASP ASP SER PHE THR SER ALA PHE VAL SER THR VAL SEQRES 6 B 229 GLY ILE ASP PHE LYS VAL LYS THR VAL PHE LYS ASN GLU SEQRES 7 B 229 LYS ARG ILE LYS LEU GLN ILE TRP ASP THR ALA GLY GLN SEQRES 8 B 229 GLU ARG TYR ARG THR ILE THR THR ALA TYR TYR ARG GLY SEQRES 9 B 229 ALA MET GLY PHE ILE LEU MET TYR ASP ILE THR ASN GLU SEQRES 10 B 229 GLU SER PHE ASN ALA VAL GLN ASP TRP SER THR GLN ILE SEQRES 11 B 229 LYS THR TYR SER TRP ASP ASN ALA GLN VAL ILE LEU VAL SEQRES 12 B 229 GLY ASN LYS CYS ASP MET GLU ASP GLU ARG VAL ILE SER SEQRES 13 B 229 THR GLU ARG GLY GLN HIS LEU GLY GLU GLN LEU GLY PHE SEQRES 14 B 229 GLU PHE PHE GLU THR SER ALA LYS ASP ASN ILE ASN VAL SEQRES 15 B 229 LYS GLN THR PHE GLU ARG LEU VAL ASP ILE ILE CYS ASP SEQRES 16 B 229 LYS MET SER GLU SER LEU GLU THR ASP PRO ALA ILE THR SEQRES 17 B 229 ALA ALA LYS GLN ASN THR ARG LEU LYS GLU THR PRO PRO SEQRES 18 B 229 PRO PRO HIS PRO ASN CYS GLY CYS HET GNP B 301 32 HET MG B 302 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *40(H2 O) HELIX 1 AA1 GLU A 16 GLU A 37 1 22 HELIX 2 AA2 ALA A 51 LYS A 70 1 20 HELIX 3 AA3 THR A 82 GLY A 90 1 9 HELIX 4 AA4 SER A 143 GLY A 156 1 14 HELIX 5 AA5 LEU A 180 HIS A 191 1 12 HELIX 6 AA6 PRO A 193 THR A 205 1 13 HELIX 7 AA7 ILE A 211 SER A 220 1 10 HELIX 8 AA8 GLY B 42 ASP B 53 1 12 HELIX 9 AA9 GLN B 89 ARG B 91 5 3 HELIX 10 AB1 TYR B 92 TYR B 99 1 8 HELIX 11 AB2 ASN B 114 ALA B 120 1 7 HELIX 12 AB3 ALA B 120 SER B 132 1 13 HELIX 13 AB4 MET B 147 ARG B 151 5 5 HELIX 14 AB5 SER B 154 GLY B 166 1 13 HELIX 15 AB6 ASN B 179 LYS B 194 1 16 SHEET 1 AA1 7 LEU A 76 LYS A 80 0 SHEET 2 AA1 7 TRP A 93 TRP A 98 -1 O THR A 96 N THR A 77 SHEET 3 AA1 7 ILE A 104 LEU A 113 -1 O LEU A 106 N PHE A 97 SHEET 4 AA1 7 CYS A 159 MET A 168 1 O PHE A 166 N LEU A 113 SHEET 5 AA1 7 LYS A 171 VAL A 179 -1 O ARG A 176 N ILE A 165 SHEET 6 AA1 7 TYR A 232 SER A 234 -1 O ILE A 233 N GLY A 177 SHEET 7 AA1 7 CYS A 208 PHE A 210 1 N VAL A 209 O TYR A 232 SHEET 1 AA2 6 ILE B 65 LYS B 74 0 SHEET 2 AA2 6 LYS B 77 THR B 86 -1 O ILE B 79 N VAL B 72 SHEET 3 AA2 6 TYR B 29 GLY B 37 1 N LEU B 33 O TRP B 84 SHEET 4 AA2 6 GLY B 105 ASP B 111 1 O MET B 109 N ILE B 36 SHEET 5 AA2 6 GLN B 137 ASN B 143 1 O ASN B 143 N TYR B 110 SHEET 6 AA2 6 GLU B 168 GLU B 171 1 O GLU B 168 N LEU B 140 LINK OG1 THR B 44 MG MG B 302 1555 1555 2.30 LINK OG1 THR B 62 MG MG B 302 1555 1555 2.18 LINK O1G GNP B 301 MG MG B 302 1555 1555 1.82 LINK O2B GNP B 301 MG MG B 302 1555 1555 2.18 LINK MG MG B 302 O HOH B 404 1555 1555 2.03 LINK MG MG B 302 O HOH B 411 1555 1555 2.04 CRYST1 58.290 108.795 172.027 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005813 0.00000