HEADER LYASE 15-JUN-22 8A5G TITLE CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS ENDONUCLEASE III-3 DOUBLE TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE III; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 5 NCIMB 9279 / R1 / VKM B-1422; SOURCE 6 GENE: DR_0928; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA GLYCOSYLASE, RESISTANT BACTERIUM, DEINOCOCCUS RADIODURANS, KEYWDS 2 ENDONUCLEASE, MUTATIONS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.T.BORGES,F.ROLLO,E.MOE REVDAT 1 03-AUG-22 8A5G 0 JRNL AUTH F.ROLLO,P.T.BORGES,C.M.SILVEIRA,M.T.G.ROSA,S.TODOROVIC,E.MOE JRNL TITL DISENTANGLING UNUSUAL CATALYTIC PROPERTIES AND THE ROLE OF JRNL TITL 2 THE [4FE-4S] CLUSTER OF THREE ENDONUCLEASE III FROM THE JRNL TITL 3 EXTREMOPHILE D. RADIODURANS. JRNL REF MOLECULES V. 27 2022 JRNL REFN ESSN 1420-3049 JRNL PMID 35807515 JRNL DOI 10.3390/MOLECULES27134270 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3026 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5000 - 4.5459 0.99 1345 149 0.1964 0.2397 REMARK 3 2 4.5459 - 3.6087 0.99 1302 146 0.1736 0.2321 REMARK 3 3 3.6087 - 3.1527 0.99 1302 143 0.2186 0.2809 REMARK 3 4 3.1527 - 2.8645 1.00 1291 143 0.2555 0.3141 REMARK 3 5 2.8645 - 2.6592 0.99 1274 143 0.2660 0.3228 REMARK 3 6 2.6592 - 2.5024 1.00 1291 143 0.2714 0.3190 REMARK 3 7 2.5024 - 2.3771 0.99 1265 140 0.2757 0.3430 REMARK 3 8 2.3771 - 2.2736 0.99 1284 143 0.2881 0.3159 REMARK 3 9 2.2736 - 2.1861 0.99 1274 142 0.2948 0.3119 REMARK 3 10 2.1861 - 2.1107 1.00 1276 142 0.3043 0.3393 REMARK 3 11 2.1107 - 2.0447 1.00 1247 139 0.3321 0.4215 REMARK 3 12 2.0447 - 1.9862 0.99 1294 144 0.3314 0.3782 REMARK 3 13 1.9862 - 1.9339 1.00 1276 142 0.3466 0.3658 REMARK 3 14 1.9339 - 1.8900 0.95 1209 133 0.3608 0.3825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 87:92) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0670 34.0711 41.7042 REMARK 3 T TENSOR REMARK 3 T11: 1.6705 T22: 0.5017 REMARK 3 T33: 0.3836 T12: -0.0406 REMARK 3 T13: 0.0265 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 2.8680 L22: 0.3325 REMARK 3 L33: 1.4058 L12: 0.8555 REMARK 3 L13: -1.7917 L23: -0.6832 REMARK 3 S TENSOR REMARK 3 S11: 0.1244 S12: -0.5390 S13: -0.0379 REMARK 3 S21: 0.4554 S22: -0.2889 S23: -0.1927 REMARK 3 S31: -0.8416 S32: 0.4846 S33: 0.2223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 93:114) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7742 31.1707 28.0753 REMARK 3 T TENSOR REMARK 3 T11: 1.3548 T22: 0.3872 REMARK 3 T33: 0.5095 T12: 0.1732 REMARK 3 T13: 0.4169 T23: 0.1303 REMARK 3 L TENSOR REMARK 3 L11: 0.7667 L22: 0.6112 REMARK 3 L33: 0.4712 L12: 0.4362 REMARK 3 L13: -0.3736 L23: -0.5390 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: -0.0126 S13: -0.1013 REMARK 3 S21: 0.3953 S22: 0.1655 S23: 0.0840 REMARK 3 S31: -0.1780 S32: -0.1720 S33: -0.0035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 115:135) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7965 29.0183 9.1165 REMARK 3 T TENSOR REMARK 3 T11: 0.2471 T22: 0.4248 REMARK 3 T33: 0.2067 T12: 0.0127 REMARK 3 T13: 0.0145 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.4993 L22: 5.5356 REMARK 3 L33: 2.3424 L12: 2.3935 REMARK 3 L13: 0.4888 L23: -1.1048 REMARK 3 S TENSOR REMARK 3 S11: 0.1939 S12: 0.3163 S13: -0.0393 REMARK 3 S21: 0.8694 S22: -0.0565 S23: 0.0672 REMARK 3 S31: -0.0177 S32: -0.2108 S33: -0.1699 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 136:139) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6904 41.9576 7.9324 REMARK 3 T TENSOR REMARK 3 T11: 0.8560 T22: 0.8044 REMARK 3 T33: 0.3886 T12: 0.3131 REMARK 3 T13: 0.1124 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.0320 L22: 4.6817 REMARK 3 L33: 5.8780 L12: 2.8501 REMARK 3 L13: 3.8151 L23: 5.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: -0.4963 S13: 0.3133 REMARK 3 S21: 0.4257 S22: -0.8651 S23: 0.7736 REMARK 3 S31: 0.2054 S32: -0.9682 S33: 0.7127 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 140:154) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6178 35.3206 -1.5168 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.4852 REMARK 3 T33: 0.2617 T12: 0.0207 REMARK 3 T13: -0.0459 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 4.7205 L22: 6.1257 REMARK 3 L33: 4.7220 L12: 2.3788 REMARK 3 L13: -0.7941 L23: 2.4404 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.3162 S13: -0.1612 REMARK 3 S21: -0.2905 S22: 0.0269 S23: 0.5352 REMARK 3 S31: -0.2981 S32: -0.4697 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 155:161) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6339 30.5389 -0.2097 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.5188 REMARK 3 T33: 0.7144 T12: 0.0034 REMARK 3 T13: 0.0599 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 9.0784 L22: 0.9444 REMARK 3 L33: 4.9396 L12: -1.6335 REMARK 3 L13: -4.3947 L23: -0.5038 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.4150 S13: -0.6198 REMARK 3 S21: -0.0976 S22: -0.2114 S23: -0.2751 REMARK 3 S31: 0.1321 S32: 0.5163 S33: 0.2299 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 162:175) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7741 42.5130 -1.6265 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.4211 REMARK 3 T33: 0.3519 T12: -0.0470 REMARK 3 T13: -0.0062 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 8.7076 L22: 5.3851 REMARK 3 L33: 8.3053 L12: -4.1556 REMARK 3 L13: 1.6727 L23: 0.0130 REMARK 3 S TENSOR REMARK 3 S11: 0.2023 S12: 0.0801 S13: 0.3165 REMARK 3 S21: 0.0450 S22: -0.0729 S23: -0.8976 REMARK 3 S31: -0.5415 S32: 0.2910 S33: -0.1352 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 176:181) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4735 46.5628 5.1575 REMARK 3 T TENSOR REMARK 3 T11: 0.4997 T22: 0.7157 REMARK 3 T33: 0.2906 T12: 0.1750 REMARK 3 T13: -0.1211 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 5.5434 L22: 9.7317 REMARK 3 L33: 4.0023 L12: -0.1984 REMARK 3 L13: 4.6892 L23: -0.7617 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.1491 S13: -0.3139 REMARK 3 S21: 0.4949 S22: 0.0566 S23: -0.2131 REMARK 3 S31: -0.2020 S32: -0.2313 S33: -0.1198 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 182:199) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8675 34.1963 9.0502 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.4877 REMARK 3 T33: 0.8141 T12: -0.0459 REMARK 3 T13: -0.4376 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 1.9521 L22: 0.6144 REMARK 3 L33: 0.8236 L12: -0.7213 REMARK 3 L13: 0.4094 L23: -0.0326 REMARK 3 S TENSOR REMARK 3 S11: 0.2248 S12: -0.1632 S13: -0.6125 REMARK 3 S21: 0.2449 S22: -0.1092 S23: -0.4560 REMARK 3 S31: 0.2845 S32: 0.2934 S33: -0.1333 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 200:203) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4837 23.7317 8.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.2583 T22: 0.4834 REMARK 3 T33: 0.5945 T12: 0.0179 REMARK 3 T13: -0.3327 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 6.3388 L22: 8.4408 REMARK 3 L33: 2.3890 L12: 0.5086 REMARK 3 L13: -1.3681 L23: -4.1732 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.8723 S13: -0.5483 REMARK 3 S21: -0.3397 S22: 0.2124 S23: 0.2771 REMARK 3 S31: 0.4182 S32: -0.1713 S33: -0.3131 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 204:220) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9551 21.1864 22.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.9565 T22: 0.4310 REMARK 3 T33: 0.4100 T12: 0.0700 REMARK 3 T13: -0.2846 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 3.9464 L22: 0.2691 REMARK 3 L33: 6.3341 L12: 0.3610 REMARK 3 L13: 1.6982 L23: -0.9934 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: -0.5382 S13: -0.1965 REMARK 3 S21: 0.4835 S22: -0.1365 S23: -0.3359 REMARK 3 S31: 0.5010 S32: -0.0273 S33: 0.0864 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 221:259) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3823 33.8328 20.8571 REMARK 3 T TENSOR REMARK 3 T11: 0.9651 T22: 0.3523 REMARK 3 T33: 0.1901 T12: 0.0306 REMARK 3 T13: -0.0095 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.7547 L22: 1.2397 REMARK 3 L33: 1.0488 L12: -0.1195 REMARK 3 L13: -0.5885 L23: 0.9048 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.1839 S13: 0.0709 REMARK 3 S21: 0.7718 S22: -0.0128 S23: -0.1492 REMARK 3 S31: -0.5414 S32: -0.0324 S33: -0.0258 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 260:270) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2349 41.4605 32.4734 REMARK 3 T TENSOR REMARK 3 T11: 1.4562 T22: 0.2690 REMARK 3 T33: 0.2498 T12: 0.1033 REMARK 3 T13: 0.1693 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 0.1574 L22: 0.9341 REMARK 3 L33: 1.2680 L12: 0.1517 REMARK 3 L13: 0.1589 L23: 1.0866 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: -0.0389 S13: 0.0573 REMARK 3 S21: 0.1522 S22: 0.1535 S23: -0.0951 REMARK 3 S31: -0.0925 S32: 0.2010 S33: -0.1758 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 271:308) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6819 34.5417 23.1199 REMARK 3 T TENSOR REMARK 3 T11: 1.3072 T22: 0.4487 REMARK 3 T33: 0.1396 T12: 0.1260 REMARK 3 T13: 0.2272 T23: 0.0855 REMARK 3 L TENSOR REMARK 3 L11: 0.1957 L22: 0.3050 REMARK 3 L33: 0.6252 L12: 0.2450 REMARK 3 L13: 0.0034 L23: -0.0195 REMARK 3 S TENSOR REMARK 3 S11: 0.1874 S12: 0.2623 S13: 0.2199 REMARK 3 S21: 0.4054 S22: 0.0515 S23: 0.1345 REMARK 3 S31: -0.4836 S32: -0.1256 S33: 0.0590 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 309:324) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3941 43.3502 28.3707 REMARK 3 T TENSOR REMARK 3 T11: 1.5118 T22: 0.6504 REMARK 3 T33: 0.6078 T12: 0.3381 REMARK 3 T13: 0.6019 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 0.0476 L22: 0.4799 REMARK 3 L33: 0.4710 L12: 0.0420 REMARK 3 L13: 0.1466 L23: 0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0848 S13: 0.1495 REMARK 3 S21: -0.1290 S22: -0.0191 S23: 0.0419 REMARK 3 S31: -0.3589 S32: -0.1560 S33: -0.0417 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19937 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: ENDO III-3 WILD-TYPE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FORMATE AND 2.2 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.17250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.41350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.17250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.41350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 76 REMARK 465 PRO A 77 REMARK 465 SER A 78 REMARK 465 ARG A 79 REMARK 465 SER A 80 REMARK 465 PRO A 81 REMARK 465 GLN A 82 REMARK 465 ALA A 83 REMARK 465 SER A 84 REMARK 465 SER A 85 REMARK 465 LYS A 86 REMARK 465 LEU A 325 REMARK 465 GLY A 326 REMARK 465 GLU A 327 REMARK 465 ALA A 328 REMARK 465 GLY A 329 REMARK 465 GLU A 330 REMARK 465 ARG A 331 REMARK 465 GLU A 332 REMARK 465 PRO A 333 REMARK 465 SER A 334 REMARK 465 GLU A 335 REMARK 465 LEU A 336 REMARK 465 GLU A 337 REMARK 465 TRP A 338 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 301 FE2 SF4 A 401 1.83 REMARK 500 O HOH A 517 O HOH A 549 2.08 REMARK 500 O HOH A 560 O HOH A 569 2.12 REMARK 500 O HOH A 550 O HOH A 572 2.13 REMARK 500 O ARG A 206 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 94 86.49 -153.06 REMARK 500 LEU A 200 57.91 -106.86 REMARK 500 HIS A 210 46.49 -86.73 REMARK 500 GLU A 260 28.97 48.95 REMARK 500 CYS A 301 57.66 -98.19 REMARK 500 LEU A 307 49.65 -96.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 308 SG REMARK 620 2 SF4 A 401 S1 114.4 REMARK 620 3 SF4 A 401 S2 118.3 99.8 REMARK 620 4 SF4 A 401 S4 114.7 103.0 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 SF4 A 401 S1 93.1 REMARK 620 3 SF4 A 401 S2 109.1 101.7 REMARK 620 4 SF4 A 401 S3 138.0 103.8 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 317 SG REMARK 620 2 SF4 A 401 S2 93.0 REMARK 620 3 SF4 A 401 S3 126.0 102.9 REMARK 620 4 SF4 A 401 S4 122.0 104.0 103.6 REMARK 620 N 1 2 3 DBREF 8A5G A 76 338 UNP Q9RVU4 Q9RVU4_DEIRA 76 338 SEQADV 8A5G THR A 250 UNP Q9RVU4 GLY 250 ENGINEERED MUTATION SEQADV 8A5G HIS A 251 UNP Q9RVU4 ASN 251 ENGINEERED MUTATION SEQRES 1 A 263 VAL PRO SER ARG SER PRO GLN ALA SER SER LYS SER ARG SEQRES 2 A 263 PRO LEU SER GLU GLN ASN PRO PRO PRO VAL TRP PHE GLY SEQRES 3 A 263 GLU TYR LEU SER ARG LEU ARG ASP THR TYR ALA PRO GLU SEQRES 4 A 263 LEU PRO PRO PRO ARG GLN PHE PRO ASP PRO LEU GLY GLY SEQRES 5 A 263 LEU ILE ARG THR ILE LEU SER GLN GLN ASN THR ARG ARG SEQRES 6 A 263 VAL ALA GLN ARG GLN TRP GLU VAL LEU THR ALA THR TYR SEQRES 7 A 263 PRO GLN TRP GLU ALA ALA LEU LEU ASP GLY PRO ASP GLY SEQRES 8 A 263 ILE GLU ALA THR LEU LYS SER ALA GLY GLY GLY LEU SER SEQRES 9 A 263 ARG MET LYS ALA ASP TYR ILE TYR GLY ILE LEU ALA HIS SEQRES 10 A 263 LEU GLN GLU HIS HIS GLY GLY LEU SER LEU ARG PHE LEU SEQRES 11 A 263 ARG GLU PHE PRO HIS THR PRO GLU GLY HIS GLU GLN ALA SEQRES 12 A 263 ARG GLN ALA LEU ALA ALA LEU PRO GLY VAL GLY HIS LYS SEQRES 13 A 263 THR VAL ALA LEU VAL LEU LEU PHE ASP LEU ARG ARG PRO SEQRES 14 A 263 ALA MET PRO VAL ASP THR HIS MET GLU ARG ALA ALA LYS SEQRES 15 A 263 ARG LEU GLU LEU VAL PRO ALA ALA TRP ASN SER HIS LYS SEQRES 16 A 263 VAL GLU ARG TRP TYR ALA GLU VAL MET PRO ALA ASP TRP SEQRES 17 A 263 GLU THR ARG PHE ALA LEU HIS ILE SER GLY VAL ARG HIS SEQRES 18 A 263 GLY ARG ASP THR CYS ARG SER LYS HIS PRO LEU CYS PRO SEQRES 19 A 263 GLN CYS PRO LEU ARG GLU PHE CYS PRO SER ALA SER ILE SEQRES 20 A 263 PHE GLU LEU GLY GLU ALA GLY GLU ARG GLU PRO SER GLU SEQRES 21 A 263 LEU GLU TRP HET SF4 A 401 8 HET CL A 402 1 HET CL A 403 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CL CHLORIDE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *72(H2 O) HELIX 1 AA1 PRO A 89 ASN A 94 1 6 HELIX 2 AA2 TRP A 99 ALA A 112 1 14 HELIX 3 AA3 ASP A 123 GLN A 135 1 13 HELIX 4 AA4 THR A 138 TYR A 153 1 16 HELIX 5 AA5 GLN A 155 ALA A 174 1 20 HELIX 6 AA6 LEU A 178 GLY A 198 1 21 HELIX 7 AA7 LEU A 202 PHE A 208 5 7 HELIX 8 AA8 THR A 211 ALA A 224 1 14 HELIX 9 AA9 GLY A 229 ARG A 242 1 14 HELIX 10 AB1 ASP A 249 LEU A 259 1 11 HELIX 11 AB2 ASN A 267 MET A 279 1 13 HELIX 12 AB3 ASP A 282 THR A 300 1 19 HELIX 13 AB4 LEU A 307 CYS A 311 5 5 HELIX 14 AB5 LEU A 313 PRO A 318 5 6 HELIX 15 AB6 SER A 319 GLU A 324 1 6 LINK SG CYS A 308 FE3 SF4 A 401 1555 1555 2.65 LINK SG CYS A 311 FE4 SF4 A 401 1555 1555 2.15 LINK SG CYS A 317 FE1 SF4 A 401 1555 1555 2.37 CRYST1 90.345 38.827 71.988 90.00 99.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011069 0.000000 0.001893 0.00000 SCALE2 0.000000 0.025755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014093 0.00000